Non-Coding RNA Search

Ss1.1-Ova1-OVR010047G04.5

Sequence:


               
               TTCACTTCCTTGCTGGCTGGAGGCTCACAGCCGCGGCTTCTCCCTCCCGGCAGAGGGGAG
CGTGCCTAGAGCTGCCGAGCCCTCTCCCTCTTAACCCAGCACCTGGAGGGGCTTAGCGGA
CGCGAGGGGTGCGAATGGGCAGGGCCGAATCTCCAGAAGGGGAGATGAGCACCCAGGACC
CTTTGGATCTGTGGAGCAGGTTGGATGGAGAAGCTGAGCCGCTCCAGGACTTGGGGTGGT
ACCACGGCAACCTCACCCGACACGCAGCCGAGGCCCTTCTCCTCTCCAACGGACGTGACG
GGAGCTACCTTCTGCGGGACAGCAATGAAAAGACCGGGCTGTACTCTCTCTCTGTGAGAG
CCAAAGACTCTGTCAAACACTTTCATGTTGAATATACTGGCTATTCACTTAAATTTGGTT
TTAATGAATTCTCATCTGTGAAGGATTTTGTCAAGCATTTTGCAAATCAGCCTCTGATTG
GAAGTGAGACAGGCACTCTCATTGTTCTGAAGCATCCCTACCCAAGAAAAGTGGAAGAAC
CTTCCATTTATGAGTCCGTCCGAGTTCACACAGCAATGCAGACAGGAAGAACAGAGAATG
ACCTGGTGCCCACTGCACCTTCTCTGGGCACCAAGGAAGGTTACCTCACCAAACAGGGGG
GCCTGGTCAAGACCTGGAAAACAAGATGGTTCACTTTGCAGAGGAATGAACTGAAATACT
TCAAAGACCAGATGTCACCAGAACCAATTCGGATCCTAAACTTAACAGAATGTTCAGCTG
TACAATTTGATTATTCACAAGAAAGAGTAAATTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCACTTCCTTGCTGGCTGGAGGCTCACAGCCGCGGCTTCTCCCTCCCGGCAGAGGGGAG
CGTGCCTAGAGCTGCCGAGCCCTCTCCCTCTTAACCCAGCACCTGGAGGGGCTTAGCGGA
CGCGAGGGGTGCGAATGGGCAGGGCCGAATCTCCAGAAGGGGAGATGAGCACCCAGGACC
CTTTGGATCTGTGGAGCAGGTTGGATGGAGAAGCTGAGCCGCTCCAGGACTTGGGGTGGT
ACCACGGCAACCTCACCCGACACGCAGCCGAGGCCCTTCTCCTCTCCAACGGACGTGACG
GGAGCTACCTTCTGCGGGACAGCAATGAAAAGACCGGGCTGTACTCTCTCTCTGTGAGAG
CCAAAGACTCTGTCAAACACTTTCATGTTGAATATACTGGCTATTCACTTAAATTTGGTT
TTAATGAATTCTCATCTGTGAAGGATTTTGTCAAGCATTTTGCAAATCAGCCTCTGATTG
GAAGTGAGACAGGCACTCTCATTGTTCTGAAGCATCCCTACCCAAGAAAAGTGGAAGAAC
CTTCCATTTATGAGTCCGTCCGAGTTCACACAGCAATGCAGACAGGAAGAACAGAGAATG
ACCTGGTGCCCACTGCACCTTCTCTGGGCACCAAGGAAGGTTACCTCACCAAACAGGGGG
GCCTGGTCAAGACCTGGAAAACAAGATGGTTCACTTTGCAGAGGAATGAACTGAAATACT
TCAAAGACCAGATGTCACCAGAACCAATTCGGATCCTAAACTTAACAGAATGTTCAGCTG
TACAATTTGATTATTCACAAGAAAGAGTAAATTGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|15277836|gb|AAH12924.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|15277836|gb|AAH12924.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               119-237, - strand, RNAz p=0.966736
               

               
               123-237, + strand, RNAz p=0.739616

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-237, - strand, RNAz p=0.966736
               

               
               123-237, + strand, RNAz p=0.739616

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of AF161551, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF161551, +

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               1-237, gnl|bosTau2|chr6 (9484592-9484343)
               

               
               1-237, gnl|canFam2|chr32 (24689460-24690077)
               

               
               1-237, gnl|dasNov1|scaffold_26776 (818-1443)
               

               
               1-237, gnl|echTel1|scaffold_309746 (42346-43051)
               

               
               1-237, gnl|hg17|chr4 (101094987-101095587)
               

               
               1-237, gnl|Hg17|chr4 (101095135-101095351)
               

               
               1-237, gnl|loxAfr1|scaffold_7463 (13945-14582)
               

               
               1-237, gnl|mm7|chr3 (137789953-137789343)
               

               
               1-237, gnl|Mm7|chr3 (137789801-137789556)
               

               
               1-237, gnl|monDom2|scaffold_37 (12937476-12936858)
               

               
               1-237, gnl|oryCun1|scaffold_206440 (12604-13198)
               

               
               1-237, gnl|panTro1|chr3 (117471592-117472192)
               

               
               1-237, gnl|rheMac2|chr5 (92772197-92772793)
               

               
               1-237, gnl|rn3|chr2 (235460992-235460403)
               


               
               351-493, gnl|bosTau2|chr6 (9460130-9459988)
               

               
               351-493, gnl|Hg17|chr4 (101118616-101118758)
               

               
               351-493, gnl|Mm7|chr3 (137769822-137769680)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-237, gnl|bosTau2|chr6 (9484592-9484343)
               

               
               1-237, gnl|canFam2|chr32 (24689460-24690077)
               

               
               1-237, gnl|dasNov1|scaffold_26776 (818-1443)
               

               
               1-237, gnl|echTel1|scaffold_309746 (42346-43051)
               

               
               1-237, gnl|hg17|chr4 (101094987-101095587)
               

               
               1-237, gnl|Hg17|chr4 (101095135-101095351)
               

               
               1-237, gnl|loxAfr1|scaffold_7463 (13945-14582)
               

               
               1-237, gnl|mm7|chr3 (137789953-137789343)
               

               
               1-237, gnl|Mm7|chr3 (137789801-137789556)
               

               
               1-237, gnl|monDom2|scaffold_37 (12937476-12936858)
               

               
               1-237, gnl|oryCun1|scaffold_206440 (12604-13198)
               

               
               1-237, gnl|panTro1|chr3 (117471592-117472192)
               

               
               1-237, gnl|rheMac2|chr5 (92772197-92772793)
               

               
               1-237, gnl|rn3|chr2 (235460992-235460403)
               


               
               351-493, gnl|bosTau2|chr6 (9460130-9459988)
               

               
               351-493, gnl|Hg17|chr4 (101118616-101118758)
               

               
               351-493, gnl|Mm7|chr3 (137769822-137769680)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               cbl (0.45919)
               

               
               cty (0.20816)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.45919)
               

               
               cty (0.20816)
               

               
               pla (0.133672)

	119-237, - strand, RNAz p=0.966736
	123-237, + strand, RNAz p=0.739616

	1-237, gnl\|bosTau2\|chr6 (9484592-9484343)
	1-237, gnl\|canFam2\|chr32 (24689460-24690077)
	1-237, gnl\|dasNov1\|scaffold_26776 (818-1443)
	1-237, gnl\|echTel1\|scaffold_309746 (42346-43051)
	1-237, gnl\|hg17\|chr4 (101094987-101095587)
	1-237, gnl\|Hg17\|chr4 (101095135-101095351)
	1-237, gnl\|loxAfr1\|scaffold_7463 (13945-14582)
	1-237, gnl\|mm7\|chr3 (137789953-137789343)
	1-237, gnl\|Mm7\|chr3 (137789801-137789556)
	1-237, gnl\|monDom2\|scaffold_37 (12937476-12936858)
	1-237, gnl\|oryCun1\|scaffold_206440 (12604-13198)
	1-237, gnl\|panTro1\|chr3 (117471592-117472192)
	1-237, gnl\|rheMac2\|chr5 (92772197-92772793)
	1-237, gnl\|rn3\|chr2 (235460992-235460403)

	351-493, gnl\|bosTau2\|chr6 (9460130-9459988)
	351-493, gnl\|Hg17\|chr4 (101118616-101118758)
	351-493, gnl\|Mm7\|chr3 (137769822-137769680)