Ss1.1-Ova1-OVR010048B03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTGGCGGGGCAAGATGGCGGCGCTCAGAGCACTGTGCAGCCTCCGGGGCGTCGCGGCC CAGGTGCTGCGGCCCGGGGCTGGGGCCCGACTACCGATTCAGCCTAGCAGAGGGGCTCGG CAATGGCAGCCAGATGTGGAATGGGCAGAGCAGTTTGGGGGAGCTGTCATGTACCCCACT AAGGAAACAGCCCACTGGAAACCTCCACCTTGGAATGATGTGGACCCTCCAAAGGACACA TTGGTGTCGAACCTAACCCTGAACTTTGGGCCCCAGCACCCAGCAGCCCATGGAGTCCTG CGGCTAGTGATGGAACTGAGTGGGGAGATGGTGCGGAAGTGCGATCCTCACATTGGGCTG CTGCACCGAGGCACTGAGAAGCTCATTGAATACAAGACCTATCTGCAGGCCCTTCCATAC TTTGACCGGCTAGACTATGTGTCCATGATGTGTAACGAACAGGCCTATTCACTGGCGGTG GAGAAGTTGCTCAACATCCAGCCTCCTCCTCGGGCACAGTGGATCCGAGTGCTCTTTGGA GAAATCACACGACTTTTGAACCACATCATGGCTGTGACCACACATGCCCTGGATATCGGG GCCATGACACCTTTCTTCTGGATGTTTGAAGAAAGGGAGAAGATGTTCGAGTTCTATGAG CGAGTGTCCGGAGCTCGCATGCATGCTGCTTACATCCGGCCAGGAGGCGTGCACCAGGAC CTACCCCTTGGGCTTCTGGATGACATTTATGAGTTTTCTAAGAACTTCTCTTTTCGGATT GATGAGTTGGAGGAGATGCTGACCAACAATAGGATCTGGCGAAATCGGACAGTCGACATT GGGGTTGTCACAGCGGAAGACGCACTTAACTATGGTTTTAGTGGGGTGATGCTCCGGGGT TCAGGCATCCAGTGGGACCTGCGGAAGACCCAGCCCTATGACGTTTATGACCAGGTGGAG TTTGATGTTCCTATTGGCTCTCGAGGTGACTGCTATGATAGGTACCTATGTCGGGTGGAG GAAATGCGCCAGTCCCTTCGAATCATCTCACAGTGTCTGAACAAAATGCCTCCCGGGGAG ATCAAGGTTGATGATGCCAAAGTGTCTCCACCTAAACGCGCAGAGATGAAGACTTCTATG GAGTCACTGATTCATCACTTTAAGTTGTATACTGAGGGCTACCAAGTACCTCCAGGGGCC ACATACACTGCCATTGAGGCTCCTAAGGGAGAGTTTGGGGTGTACCTGGTGTCTGATGGC AGCAGCCGCCCTTATCGATGCAAGATCAAAGCTCCTGGTTTTGCTCACTTGGCTGGTTTG GACAAGATGTCTAAGGGACACATGTTGGCGGACGTCGTTGCCATCATAGGTACCCAAGAT ATTGTGTTTGGAGAAGTAGATCGGTGAGCAGGGGAGCAGCATTGACTCTCCCCACCTACA CACTCCATCTGCGGAGCTTGTCTGTCGTTGGAAGTGGATGGGACTGTGTATGTATGTGTG TATCCATGTACATAAATGCTTAGCTGTTAGGCTTTCTGTGCATGTACTGGAAAAGGAGAA ATTATAATAAATTAGCCATCTTCTGGCCCCATGCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTGGCGGGGCAAGATGGCGGCGCTCAGAGCACTGTGCAGCCTCCGGGGCGTCGCGGCC CAGGTGCTGCGGCCCGGGGCTGGGGCCCGACTACCGATTCAGCCTAGCAGAGGGGCTCGG CAATGGCAGCCAGATGTGGAATGGGCAGAGCAGTTTGGGGGAGCTGTCATGTACCCCACT AAGGAAACAGCCCACTGGAAACCTCCACCTTGGAATGATGTGGACCCTCCAAAGGACACA TTGGTGTCGAACCTAACCCTGAACTTTGGGCCCCAGCACCCAGCAGCCCATGGAGTCCTG CGGCTAGTGATGGAACTGAGTGGGGAGATGGTGCGGAAGTGCGATCCTCACATTGGGCTG CTGCACCGAGGCACTGAGAAGCTCATTGAATACAAGACCTATCTGCAGGCCCTTCCATAC TTTGACCGGCTAGACTATGTGTCCATGATGTGTAACGAACAGGCCTATTCACTGGCGGTG GAGAAGTTGCTCAACATCCAGCCTCCTCCTCGGGCACAGTGGATCCGAGTGCTCTTTGGA GAAATCACACGACTTTTGAACCACATCATGGCTGTGACCACACATGCCCTGGATATCGGG GCCATGACACCTTTCTTCTGGATGTTTGAAGAAAGGGAGAAGATGTTCGAGTTCTATGAG CGAGTGTCCGGAGCTCGCATGCATGCTGCTTACATCCGGCCAGGAGGCGTGCACCAGGAC CTACCCCTTGGGCTTCTGGATGACATTTATGAGTTTTCTAAGAACTTCTCTTTTCGGATT GATGAGTTGGAGGAGATGCTGACCAACAATAGGATCTGGCGAAATCGGACAGTCGACATT GGGGTTGTCACAGCGGAAGACGCACTTAACTATGGTTTTAGTGGGGTGATGCTCCGGGGT TCAGGCATCCAGTGGGACCTGCGGAAGACCCAGCCCTATGACGTTTATGACCAGGTGGAG TTTGATGTTCCTATTGGCTCTCGAGGTGACTGCTATGATAGGTACCTATGTCGGGTGGAG GAAATGCGCCAGTCCCTTCGAATCATCTCACAGTGTCTGAACAAAATGCCTCCCGGGGAG ATCAAGGTTGATGATGCCAAAGTGTCTCCACCTAAACGCGCAGAGATGAAGACTTCTATG GAGTCACTGATTCATCACTTTAAGTTGTATACTGAGGGCTACCAAGTACCTCCAGGGGCC ACATACACTGCCATTGAGGCTCCTAAGGGAGAGTTTGGGGTGTACCTGGTGTCTGATGGC AGCAGCCGCCCTTATCGATGCAAGATCAAAGCTCCTGGTTTTGCTCACTTGGCTGGTTTG GACAAGATGTCTAAGGGACACATGTTGGCGGACGTCGTTGCCATCATAGGTACCCAAGAT ATTGTGTTTGGAGAAGTAGATCGGTGAGCAGGGGAGCAGCATTGACTCTCCCCACCTACA CACTCCATCTGCGGAGCTTGTCTGTCGTTGGAAGTGGATGGGACTGTGTATGTATGTGTG TATCCATGTACATAAATGCTTAGCTGTTAGGCTTTCTGTGCATGTACTGGAAAAGGAGAA ATTATAATAAATTAGCCATCTTCTGGCCCCATGCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 528-642, + strand, RNAz p=0.774883 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 528-642, + strand, RNAz p=0.774883 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 9-110, gnl|bosTau2|chr3 (7596288-7596187) | |
| 9-110, gnl|Hg17|chr1 (157985242-157985343) | |
| 9-110, gnl|Mm7|chr1 (171217188-171217087) | |
| 217-409, gnl|bosTau2|chr3 (7592323-7592131) | |
| 217-409, gnl|Hg17|chr1 (157989269-157989461) | |
| 217-409, gnl|Mm7|chr1 (171211231-171211039) | |
| 528-642, gnl|bosTau2|chr3 (7590447-7590333) | |
| 528-642, gnl|canFam2|chr38 (24274786-24274645) | |
| 528-642, gnl|danRer3|chr7 (9046224-9046117) | |
| 528-642, gnl|dasNov1|scaffold_14023 (3117-2880) | |
| 528-642, gnl|echTel1|scaffold_311345 (59821-59695) | |
| 528-642, gnl|fr1|chrUn (261773234-261773362) | |
| 528-642, gnl|hg17|chr1 (157992333-157992464) | |
| 528-642, gnl|Hg17|chr1 (157992344-157992458) | |
| 528-642, gnl|loxAfr1|scaffold_33740 (9034-8911) | |
| 528-642, gnl|mm7|chr1 (171209012-171208879) | |
| 528-642, gnl|Mm7|chr1 (171208992-171208878) | |
| 528-642, gnl|monDom2|scaffold_0 (28595962-28595831) | |
| 528-642, gnl|oryCun1|scaffold_179946 (35227-35366) | |
| 528-642, gnl|panTro1|chr1_random (27659041-27659172) | |
| 528-642, gnl|rheMac2|chr1 (139820202-139820333) | |
| 528-642, gnl|rn3|chr5 (124552227-124552124) | |
| 528-642, gnl|tetNig1|chrUn_random (23413571-23413702) | |
| 528-642, gnl|xenTro1|scaffold_1214 (192313-192444) | |
| 1000-1131, gnl|bosTau2|chr3 (7588359-7588228) | |
| 1000-1131, gnl|canFam2|chr38 (24272543-24272389) | |
| 1000-1131, gnl|danRer3|chr7 (9041062-9040913) | |
| 1000-1131, gnl|echTel1|scaffold_311345 (57770-57608) | |
| 1000-1131, gnl|fr1|chrUn (261774636-261774788) | |
| 1000-1131, gnl|hg17|chr1 (157995197-157995351) | |
| 1000-1131, gnl|Hg17|chr1 (157995212-157995343) | |
| 1000-1131, gnl|loxAfr1|scaffold_33740 (7148-7036) | |
| 1000-1131, gnl|mm7|chr1 (171207380-171207227) | |
| 1000-1131, gnl|Mm7|chr1 (171207364-171207233) | |
| 1000-1131, gnl|monDom2|scaffold_0 (28592627-28592476) | |
| 1000-1131, gnl|oryCun1|scaffold_179946 (37153-37306) | |
| 1000-1131, gnl|panTro1|chr1_random (27661931-27662085) | |
| 1000-1131, gnl|rheMac2|chr1 (139823092-139823246) | |
| 1000-1131, gnl|rn3|chr13 (87315971-87315822) | |
| 1000-1131, gnl|tetNig1|chrUn_random (23414878-23415016) | |
| 1000-1131, gnl|xenTro1|scaffold_1214 (196904-197049) | |
| 1359-1596, gnl|bosTau2|chr3 (7587118-7586892) | |
| 1359-1596, gnl|Hg17|chr1 (157997008-157997255) | |
| 1359-1596, gnl|Mm7|chr1 (171205191-171204948) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-110, gnl|bosTau2|chr3 (7596288-7596187) | |
| 9-110, gnl|Hg17|chr1 (157985242-157985343) | |
| 9-110, gnl|Mm7|chr1 (171217188-171217087) | |
| 217-409, gnl|bosTau2|chr3 (7592323-7592131) | |
| 217-409, gnl|Hg17|chr1 (157989269-157989461) | |
| 217-409, gnl|Mm7|chr1 (171211231-171211039) | |
| 528-642, gnl|bosTau2|chr3 (7590447-7590333) | |
| 528-642, gnl|canFam2|chr38 (24274786-24274645) | |
| 528-642, gnl|danRer3|chr7 (9046224-9046117) | |
| 528-642, gnl|dasNov1|scaffold_14023 (3117-2880) | |
| 528-642, gnl|echTel1|scaffold_311345 (59821-59695) | |
| 528-642, gnl|fr1|chrUn (261773234-261773362) | |
| 528-642, gnl|hg17|chr1 (157992333-157992464) | |
| 528-642, gnl|Hg17|chr1 (157992344-157992458) | |
| 528-642, gnl|loxAfr1|scaffold_33740 (9034-8911) | |
| 528-642, gnl|mm7|chr1 (171209012-171208879) | |
| 528-642, gnl|Mm7|chr1 (171208992-171208878) | |
| 528-642, gnl|monDom2|scaffold_0 (28595962-28595831) | |
| 528-642, gnl|oryCun1|scaffold_179946 (35227-35366) | |
| 528-642, gnl|panTro1|chr1_random (27659041-27659172) | |
| 528-642, gnl|rheMac2|chr1 (139820202-139820333) | |
| 528-642, gnl|rn3|chr5 (124552227-124552124) | |
| 528-642, gnl|tetNig1|chrUn_random (23413571-23413702) | |
| 528-642, gnl|xenTro1|scaffold_1214 (192313-192444) | |
| 1000-1131, gnl|bosTau2|chr3 (7588359-7588228) | |
| 1000-1131, gnl|canFam2|chr38 (24272543-24272389) | |
| 1000-1131, gnl|danRer3|chr7 (9041062-9040913) | |
| 1000-1131, gnl|echTel1|scaffold_311345 (57770-57608) | |
| 1000-1131, gnl|fr1|chrUn (261774636-261774788) | |
| 1000-1131, gnl|hg17|chr1 (157995197-157995351) | |
| 1000-1131, gnl|Hg17|chr1 (157995212-157995343) | |
| 1000-1131, gnl|loxAfr1|scaffold_33740 (7148-7036) | |
| 1000-1131, gnl|mm7|chr1 (171207380-171207227) | |
| 1000-1131, gnl|Mm7|chr1 (171207364-171207233) | |
| 1000-1131, gnl|monDom2|scaffold_0 (28592627-28592476) | |
| 1000-1131, gnl|oryCun1|scaffold_179946 (37153-37306) | |
| 1000-1131, gnl|panTro1|chr1_random (27661931-27662085) | |
| 1000-1131, gnl|rheMac2|chr1 (139823092-139823246) | |
| 1000-1131, gnl|rn3|chr13 (87315971-87315822) | |
| 1000-1131, gnl|tetNig1|chrUn_random (23414878-23415016) | |
| 1000-1131, gnl|xenTro1|scaffold_1214 (196904-197049) | |
| 1359-1596, gnl|bosTau2|chr3 (7587118-7586892) | |
| 1359-1596, gnl|Hg17|chr1 (157997008-157997255) | |
| 1359-1596, gnl|Mm7|chr1 (171205191-171204948) |
| Expressed library(ies): 54 entry(ies) | More info |
| Expressed library(ies): 54 entry(ies) | Help | Less info |
| ssp (1.08416) | |
| sme (0.91631) | |
| cst (0.840218) | |
| cki (0.826173) | |
| che (0.817884) | |
| fce (0.814775) | |
| tbr (0.770891) | |
| fhi (0.678311) | |
| cmu (0.55918) | |
| hlv (0.557025) | |
| sin (0.524843) | |
| clu (0.478583) | |
| hyp (0.42851) | |
| nms (0.427716) | |
| hea (0.408998) | |
| ste (0.405625) | |
| cov (0.396458) | |
| elu (0.385356) | |
| nep (0.36785) | |
| sag (0.36543) | |
| ecc (0.345105) | |
| cje (0.330469) | |
| nco (0.323468) | |
| cli (0.305623) | |
| cag (0.302389) | |
| cbl (0.229595) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| col (0.195008) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| ill (0.175593) | |
| ton (0.1755) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| isp (0.150376) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| pty (0.142714) | |
| csk (0.140746) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 54 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (1.08416) | |
| sme (0.91631) | |
| cst (0.840218) | |
| cki (0.826173) | |
| che (0.817884) | |
| fce (0.814775) | |
| tbr (0.770891) | |
| fhi (0.678311) | |
| cmu (0.55918) | |
| hlv (0.557025) | |
| sin (0.524843) | |
| clu (0.478583) | |
| hyp (0.42851) | |
| nms (0.427716) | |
| hea (0.408998) | |
| ste (0.405625) | |
| cov (0.396458) | |
| elu (0.385356) | |
| nep (0.36785) | |
| sag (0.36543) | |
| ecc (0.345105) | |
| cje (0.330469) | |
| nco (0.323468) | |
| cli (0.305623) | |
| cag (0.302389) | |
| cbl (0.229595) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| col (0.195008) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| ill (0.175593) | |
| ton (0.1755) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| isp (0.150376) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| pty (0.142714) | |
| csk (0.140746) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |