Ss1.1-Ova1-OVR010048C02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATACTGCAGTGAAAGCCGAGGCAGCGGGCAGGCGAGCAGGGGGCGGGCGGACATCTTGGG ATCCGGAGAGTGGCCGGCCCGGCAGAGCAGGCGGCCTCGGACACCAGGTCTGTTCTCAGA GCGATGGGCTGCCAGGACTGAGCTGCCGCCATGATTGGAGGCTTATTCATCTATAATCAC AAGGGGGAGGTGCTCATCTCCCGGGTCTACCGAGATGACATCGGGAGGAACGCAGTGGAC GCCTTTCGGGTCAATGTTATCCACGCCCGGCAGCAGGTGCGCAGCCCCGTCACCAACATC GCTCGCACCAGTTTCTTCCATGTTAAGCGGTCCAACATCTGGCTGGCAGCTGTCACCAAG CAGAATGTCAATGCTGCCATGGTCTTCGAATTCCTCTATAAGATGTGTGACGTAATGGCT GCCTACTTTGGGAAGATCAGCGAAGAGAACATCAAGAACAATTTTGTGCTCATATATGAG TTGCTTGATGAGATCCTGGACTTTGGCTACCCGCAGAACTCAGAGACGGGCGCGCTAAAA ACCTTCATCACCCAGCAGGGCATCAAAAGCCAGCATCAGACGAAAGAAGAGCAGTCCCAA ATCACCAGCCAGGTGACAGGGCAGATTGGCTGGCGGCGGGAAGGCATCAAGTATCGCCGA AACGAGCTCTTCCTGGATGTGCTGGAGAGTGTGAACCTCCTCATGTCCCCACAGGGGCAG GTGCTGAGCGCCCATGTGTCCGGCCGAGTGGTGATGAAGAGCTACCTGAGTGGCATGCCT GAGTGCAAGTTTGGGATGAATGACAAGATTGTCATTGAGAAGCAGGGCAAAGGCACAGCC GATGAAACAAGCAAGAGCGGGAAGCAATCAATTGCCATTGATGACTGCACCTTCCACCAG TGTGTTCGACTCAGCAAGTTTGACTCTGAACGCAGCATCAGCTTCATCCCACCAGATGGA GAATTTGAGCTCATGAGGTATCGCACCACCAAGGACATCATCCTTCCCTTCCGAGTGATC CCGCTAGTTCGGGAAGTGGGGCGCACCAAGCTGGAGGTCAAGGTGGTCATTAAGTCCAAC TTCAAGCCCTCACTACTGGCTCAGAAGATTGAGGTGAGGATCCCAACCCCACTGAACACC AGCGGGGTGCAGGTGATCTGCATGAAGGGGAAGGCTAAGTACAAGGCCAGCGAGAACGCC ATCGTGTGGAAGATCAAGCGCATGGCAGGCATGAAGGAATCACAGATCAGCGCTGAGATT GAGCTTCTGCCCACCAATGACAAGAAGAAATGGGCTCGACCCCCCATTTCGATGAACTTT GAGGTGCCATTCGCGCCTTCTGGCCTCAAGGTGCGCTACTTGAAGGTGTTTGAACCGAAG CTGAACTACAGCGACCACGATGTCATCAAATGGGTGCGCTACATTGGCCGCAGTGGCATT TATGAGACCCGCTGCTAGCTGCCTAGTGACAGCTAGCCCGTCTCCCCACCCACCCTCTTC CACAGGTCTGGGTGCCCTCGGCCACCACACATCAGTGTCTCCTCCCTCCTGCTTTGCTGC CTTCCCTTTGCACCAGCCCCTGAGTCTAGGTCTGGACCAACCATGTTGCAAGCGGGACTG GTGGAACAGTCCCTGGGCTCCCTGGGCAGGGTGGTTTCTGAGGCTCCTGCTCTTCCATCC ATCTGCCAGCCCTGGCCCAATGCCAGGCTCTGAGTTCTGTGACCAAAGTCAGATGGGCCC CTTCTCCTCCCCTCCCCTATGGCCACATCTCTCTGGAGTGGGAGGGTTGGCTGCCCCTCA CCTCGGAGCTCCCCCAAAGGCCAGTAACGGATCCCCAGCCCTCAATTCCTACTCTGCTTT GGGCTAGTGTGAGCTTCATTTTGTACACTTGTGACTTCGTCCAGTTATAAACCCAATAAA CTCTGTAGAACGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATACTGCAGTGAAAGCCGAGGCAGCGGGCAGGCGAGCAGGGGGCGGGCGGACATCTTGGG ATCCGGAGAGTGGCCGGCCCGGCAGAGCAGGCGGCCTCGGACACCAGGTCTGTTCTCAGA GCGATGGGCTGCCAGGACTGAGCTGCCGCCATGATTGGAGGCTTATTCATCTATAATCAC AAGGGGGAGGTGCTCATCTCCCGGGTCTACCGAGATGACATCGGGAGGAACGCAGTGGAC GCCTTTCGGGTCAATGTTATCCACGCCCGGCAGCAGGTGCGCAGCCCCGTCACCAACATC GCTCGCACCAGTTTCTTCCATGTTAAGCGGTCCAACATCTGGCTGGCAGCTGTCACCAAG CAGAATGTCAATGCTGCCATGGTCTTCGAATTCCTCTATAAGATGTGTGACGTAATGGCT GCCTACTTTGGGAAGATCAGCGAAGAGAACATCAAGAACAATTTTGTGCTCATATATGAG TTGCTTGATGAGATCCTGGACTTTGGCTACCCGCAGAACTCAGAGACGGGCGCGCTAAAA ACCTTCATCACCCAGCAGGGCATCAAAAGCCAGCATCAGACGAAAGAAGAGCAGTCCCAA ATCACCAGCCAGGTGACAGGGCAGATTGGCTGGCGGCGGGAAGGCATCAAGTATCGCCGA AACGAGCTCTTCCTGGATGTGCTGGAGAGTGTGAACCTCCTCATGTCCCCACAGGGGCAG GTGCTGAGCGCCCATGTGTCCGGCCGAGTGGTGATGAAGAGCTACCTGAGTGGCATGCCT GAGTGCAAGTTTGGGATGAATGACAAGATTGTCATTGAGAAGCAGGGCAAAGGCACAGCC GATGAAACAAGCAAGAGCGGGAAGCAATCAATTGCCATTGATGACTGCACCTTCCACCAG TGTGTTCGACTCAGCAAGTTTGACTCTGAACGCAGCATCAGCTTCATCCCACCAGATGGA GAATTTGAGCTCATGAGGTATCGCACCACCAAGGACATCATCCTTCCCTTCCGAGTGATC CCGCTAGTTCGGGAAGTGGGGCGCACCAAGCTGGAGGTCAAGGTGGTCATTAAGTCCAAC TTCAAGCCCTCACTACTGGCTCAGAAGATTGAGGTGAGGATCCCAACCCCACTGAACACC AGCGGGGTGCAGGTGATCTGCATGAAGGGGAAGGCTAAGTACAAGGCCAGCGAGAACGCC ATCGTGTGGAAGATCAAGCGCATGGCAGGCATGAAGGAATCACAGATCAGCGCTGAGATT GAGCTTCTGCCCACCAATGACAAGAAGAAATGGGCTCGACCCCCCATTTCGATGAACTTT GAGGTGCCATTCGCGCCTTCTGGCCTCAAGGTGCGCTACTTGAAGGTGTTTGAACCGAAG CTGAACTACAGCGACCACGATGTCATCAAATGGGTGCGCTACATTGGCCGCAGTGGCATT TATGAGACCCGCTGCTAGCTGCCTAGTGACAGCTAGCCCGTCTCCCCACCCACCCTCTTC CACAGGTCTGGGTGCCCTCGGCCACCACACATCAGTGTCTCCTCCCTCCTGCTTTGCTGC CTTCCCTTTGCACCAGCCCCTGAGTCTAGGTCTGGACCAACCATGTTGCAAGCGGGACTG GTGGAACAGTCCCTGGGCTCCCTGGGCAGGGTGGTTTCTGAGGCTCCTGCTCTTCCATCC ATCTGCCAGCCCTGGCCCAATGCCAGGCTCTGAGTTCTGTGACCAAAGTCAGATGGGCCC CTTCTCCTCCCCTCCCCTATGGCCACATCTCTCTGGAGTGGGAGGGTTGGCTGCCCCTCA CCTCGGAGCTCCCCCAAAGGCCAGTAACGGATCCCCAGCCCTCAATTCCTACTCTGCTTT GGGCTAGTGTGAGCTTCATTTTGTACACTTGTGACTTCGTCCAGTTATAAACCCAATAAA CTCTGTAGAACGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 260-1792, - strand, RNAz p=0.99274 | |
| 728-883, - strand, RNAz p=0.889187 | |
| 1112-1212, + strand, RNAz p=0.94854 | |
| 1361-1593, - strand, RNAz p=0.983772 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 260-1792, - strand, RNAz p=0.99274 | |
| 728-883, - strand, RNAz p=0.889187 | |
| 1112-1212, + strand, RNAz p=0.94854 | |
| 1361-1593, - strand, RNAz p=0.983772 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 3-109, gnl|bosTau2|chr1 (51272647-51272541) | |
| 3-109, gnl|canFam2|chr34 (20078763-20078868) | |
| 3-109, gnl|echTel1|scaffold_14025 (1661-1576) | |
| 3-109, gnl|galGal2|chr9 (15167588-15167686) | |
| 3-109, gnl|hg17|chr3 (185375346-185375451) | |
| 3-109, gnl|Hg17|chr3 (185375345-185375451) | |
| 3-109, gnl|mm7|chr16 (20085521-20085624) | |
| 3-109, gnl|Mm7|chr16 (20085520-20085624) | |
| 3-109, gnl|oryCun1|scaffold_174838 (76990-77096) | |
| 3-109, gnl|panTro1|chr2 (189325777-189325882) | |
| 3-109, gnl|rheMac2|chr2 (102495459-102495354) | |
| 3-109, gnl|rn3|chr11 (82651778-82651675) | |
| 221-488, gnl|bosTau2|chr1 (51268718-51268451) | |
| 221-488, gnl|Hg17|chr3 (185379343-185379610) | |
| 221-488, gnl|Mm7|chr16 (20089325-20089592) | |
| 500-1044, gnl|bosTau2|chr1 (56176690-56177233) | |
| 500-1044, gnl|Hg17|chr3 (185380668-185382468) | |
| 500-1044, gnl|Mm7|chr2 (49315815-49316359) | |
| 1112-1212, gnl|bosTau2|chr1 (51265705-51265605) | |
| 1112-1212, gnl|canFam2|chr34 (20085939-20086066) | |
| 1112-1212, gnl|danRer3|chr18 (34974116-34974236) | |
| 1112-1212, gnl|dasNov1|scaffold_6962 (56098-55973) | |
| 1112-1212, gnl|echTel1|scaffold_318235 (49195-49066) | |
| 1112-1212, gnl|fr1|chrUn (74760243-74760110) | |
| 1112-1212, gnl|galGal2|chr9 (15188489-15188626) | |
| 1112-1212, gnl|hg17|chr3 (185382627-185382756) | |
| 1112-1212, gnl|Hg17|chr3 (185382639-185382739) | |
| 1112-1212, gnl|loxAfr1|scaffold_6504 (46658-46782) | |
| 1112-1212, gnl|mm7|chr16 (20092204-20092328) | |
| 1112-1212, gnl|Mm7|chr16 (20092216-20092316) | |
| 1112-1212, gnl|monDom2|scaffold_167 (1473274-1473392) | |
| 1112-1212, gnl|oryCun1|scaffold_174838 (83813-83937) | |
| 1112-1212, gnl|panTro1|chr2 (189333064-189333193) | |
| 1112-1212, gnl|rheMac2|chr2 (102488141-102488012) | |
| 1112-1212, gnl|rn3|chr11 (82644719-82644595) | |
| 1112-1212, gnl|tetNig1|chr15 (4208829-4208946) | |
| 1112-1212, gnl|xenTro1|scaffold_244 (69722-69874) | |
| 1322-1934, gnl|bosTau2|chr1 (51264322-51263711) | |
| 1322-1934, gnl|Hg17|chr3 (185383970-185384581) | |
| 1322-1934, gnl|Mm7|chr16 (20093330-20093928) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-109, gnl|bosTau2|chr1 (51272647-51272541) | |
| 3-109, gnl|canFam2|chr34 (20078763-20078868) | |
| 3-109, gnl|echTel1|scaffold_14025 (1661-1576) | |
| 3-109, gnl|galGal2|chr9 (15167588-15167686) | |
| 3-109, gnl|hg17|chr3 (185375346-185375451) | |
| 3-109, gnl|Hg17|chr3 (185375345-185375451) | |
| 3-109, gnl|mm7|chr16 (20085521-20085624) | |
| 3-109, gnl|Mm7|chr16 (20085520-20085624) | |
| 3-109, gnl|oryCun1|scaffold_174838 (76990-77096) | |
| 3-109, gnl|panTro1|chr2 (189325777-189325882) | |
| 3-109, gnl|rheMac2|chr2 (102495459-102495354) | |
| 3-109, gnl|rn3|chr11 (82651778-82651675) | |
| 221-488, gnl|bosTau2|chr1 (51268718-51268451) | |
| 221-488, gnl|Hg17|chr3 (185379343-185379610) | |
| 221-488, gnl|Mm7|chr16 (20089325-20089592) | |
| 500-1044, gnl|bosTau2|chr1 (56176690-56177233) | |
| 500-1044, gnl|Hg17|chr3 (185380668-185382468) | |
| 500-1044, gnl|Mm7|chr2 (49315815-49316359) | |
| 1112-1212, gnl|bosTau2|chr1 (51265705-51265605) | |
| 1112-1212, gnl|canFam2|chr34 (20085939-20086066) | |
| 1112-1212, gnl|danRer3|chr18 (34974116-34974236) | |
| 1112-1212, gnl|dasNov1|scaffold_6962 (56098-55973) | |
| 1112-1212, gnl|echTel1|scaffold_318235 (49195-49066) | |
| 1112-1212, gnl|fr1|chrUn (74760243-74760110) | |
| 1112-1212, gnl|galGal2|chr9 (15188489-15188626) | |
| 1112-1212, gnl|hg17|chr3 (185382627-185382756) | |
| 1112-1212, gnl|Hg17|chr3 (185382639-185382739) | |
| 1112-1212, gnl|loxAfr1|scaffold_6504 (46658-46782) | |
| 1112-1212, gnl|mm7|chr16 (20092204-20092328) | |
| 1112-1212, gnl|Mm7|chr16 (20092216-20092316) | |
| 1112-1212, gnl|monDom2|scaffold_167 (1473274-1473392) | |
| 1112-1212, gnl|oryCun1|scaffold_174838 (83813-83937) | |
| 1112-1212, gnl|panTro1|chr2 (189333064-189333193) | |
| 1112-1212, gnl|rheMac2|chr2 (102488141-102488012) | |
| 1112-1212, gnl|rn3|chr11 (82644719-82644595) | |
| 1112-1212, gnl|tetNig1|chr15 (4208829-4208946) | |
| 1112-1212, gnl|xenTro1|scaffold_244 (69722-69874) | |
| 1322-1934, gnl|bosTau2|chr1 (51264322-51263711) | |
| 1322-1934, gnl|Hg17|chr3 (185383970-185384581) | |
| 1322-1934, gnl|Mm7|chr16 (20093330-20093928) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| hyp (1.14269) | |
| ebs (1.06471) | |
| cty (0.832639) | |
| fcc (0.791139) | |
| eru (0.720288) | |
| ece (0.687916) | |
| eep (0.61282) | |
| clu (0.598229) | |
| nep (0.551775) | |
| cov (0.528611) | |
| amn (0.417711) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| jca (0.34188) | |
| mcp (0.341297) | |
| cag (0.302389) | |
| hlv (0.278513) | |
| cly (0.241284) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| col (0.195008) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ute (0.132784) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| med (0.116252) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (1.14269) | |
| ebs (1.06471) | |
| cty (0.832639) | |
| fcc (0.791139) | |
| eru (0.720288) | |
| ece (0.687916) | |
| eep (0.61282) | |
| clu (0.598229) | |
| nep (0.551775) | |
| cov (0.528611) | |
| amn (0.417711) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| jca (0.34188) | |
| mcp (0.341297) | |
| cag (0.302389) | |
| hlv (0.278513) | |
| cly (0.241284) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| col (0.195008) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ute (0.132784) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| med (0.116252) | |
| jej (0.0989218) | |
| eje (0.0988338) |