Non-Coding RNA Search

Ss1.1-Ova1-OVR010048G11.5.5

Sequence:


               
               TTGCGTGTTTATTGGTTAAACGCAGGGGTCGCAAACTCAAATGCCCACAGCGGCCAGGTA
GGTAGGTTAGGTCAGTGGCTGAAGCGATCTGGGGGGAGGCAAAAAAGGAACGGCGGGGAG
GATGGGACCGAGGAATGTGGGCCCCCTGTTATGGGGGCAGCTGCTACTCAGCGCCAGCTG
CTCATCGCCACGGGGGGAAGCGGGACCAGAGACGCCGGCTCTTCGGCTTTTTCAAGAGGA
CGCATAACTCCGGGTTGTTATTTGAACTGTCCTGACTTTGGTAAGACTCTGTGACAGTGA
CGGTGAAAGAGGCCGACTCATCATCGATTTCACACAAGTACTCGCCGGAGTCCTCCAGCT
GGACGGCGGGCAGCACCAGGCGGCGGACGGTGTCCTCCTTCTGTAGGAGCAGCGCCGGAC
TCTCCACCACCTCTTCACCATCCTTGGTCCAGCGCACCTCAGCCCAGGGCCGGCACAGCT
CGCAGGTCAGCACCACGCGCTCCAGGCGCACGGCTGCCACGTACACCTTGCCGCTGGGGT
ACACGATCCACGAGGAGACGTCTGTGATGGTGACAGTGAAGTAGGCGCGTTCGTCCCCAG
CAACGCACTGGAACTCGCCCCCGTCCGGAGGCTGGGCAGCAGGCAGCACGAGGCGGTGAT
GGGCCCCCTCGTTCTCCAGCACCACGAAGTCACTCTCCTCCACTTCCTGCCCGTCCTTGT
ACCAGTGGACCGGGGCGCCCTCCCGGTCCACCTCACAGGTCAGCATGACGCACTCCGATG
TTATGGCATGCACAAACACGTGCTCCCGGGGGTCCAGGATGTGCACTGGGGGGTCTCGGA
CCGTGACGCTGAAGAAAGCTGAGACCCCTTCCGTTCTGCACTCAAACTCGCCGCTGTCCT
GGATTTGGGCCTCGGGCAGAATCAGGCGGTGTTTGCGTCCATCCAGCTTCACCACCAGCG
ACTCACTCTCCTCCACCCGCTGCCCGTCCTTGTACCAGCTCGCTGGGAAGTCCACCCGGG
AGAGCTCACAGGTCAGCACCACCCTCTCCGAGGTCGTGAAGGTCAACGACACCTTGTCCT
GGGGGCTCAGGATGTGCACCGGGCTCTCTTGGATGGTGAGGGCGGCTGAGTCCTGCACGC
CTGGGCAGCTGAAGCCGACCAGGGCCCCGCTGTCCTGGTGCTTGACAGCTTGCAGGATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCGTGTTTATTGGTTAAACGCAGGGGTCGCAAACTCAAATGCCCACAGCGGCCAGGTA
GGTAGGTTAGGTCAGTGGCTGAAGCGATCTGGGGGGAGGCAAAAAAGGAACGGCGGGGAG
GATGGGACCGAGGAATGTGGGCCCCCTGTTATGGGGGCAGCTGCTACTCAGCGCCAGCTG
CTCATCGCCACGGGGGGAAGCGGGACCAGAGACGCCGGCTCTTCGGCTTTTTCAAGAGGA
CGCATAACTCCGGGTTGTTATTTGAACTGTCCTGACTTTGGTAAGACTCTGTGACAGTGA
CGGTGAAAGAGGCCGACTCATCATCGATTTCACACAAGTACTCGCCGGAGTCCTCCAGCT
GGACGGCGGGCAGCACCAGGCGGCGGACGGTGTCCTCCTTCTGTAGGAGCAGCGCCGGAC
TCTCCACCACCTCTTCACCATCCTTGGTCCAGCGCACCTCAGCCCAGGGCCGGCACAGCT
CGCAGGTCAGCACCACGCGCTCCAGGCGCACGGCTGCCACGTACACCTTGCCGCTGGGGT
ACACGATCCACGAGGAGACGTCTGTGATGGTGACAGTGAAGTAGGCGCGTTCGTCCCCAG
CAACGCACTGGAACTCGCCCCCGTCCGGAGGCTGGGCAGCAGGCAGCACGAGGCGGTGAT
GGGCCCCCTCGTTCTCCAGCACCACGAAGTCACTCTCCTCCACTTCCTGCCCGTCCTTGT
ACCAGTGGACCGGGGCGCCCTCCCGGTCCACCTCACAGGTCAGCATGACGCACTCCGATG
TTATGGCATGCACAAACACGTGCTCCCGGGGGTCCAGGATGTGCACTGGGGGGTCTCGGA
CCGTGACGCTGAAGAAAGCTGAGACCCCTTCCGTTCTGCACTCAAACTCGCCGCTGTCCT
GGATTTGGGCCTCGGGCAGAATCAGGCGGTGTTTGCGTCCATCCAGCTTCACCACCAGCG
ACTCACTCTCCTCCACCCGCTGCCCGTCCTTGTACCAGCTCGCTGGGAAGTCCACCCGGG
AGAGCTCACAGGTCAGCACCACCCTCTCCGAGGTCGTGAAGGTCAACGACACCTTGTCCT
GGGGGCTCAGGATGTGCACCGGGCTCTCTTGGATGGTGAGGGCGGCTGAGTCCTGCACGC
CTGGGCAGCTGAAGCCGACCAGGGCCCCGCTGTCCTGGTGCTTGACAGCTTGCAGGATGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q80WA6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q80WA6_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-159, + strand, RNAz p=0.999039
               

               
               718-836, + strand, RNAz p=0.730444

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, + strand, RNAz p=0.999039
               

               
               718-836, + strand, RNAz p=0.730444

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-291, gnl|bosTau2|chr2 (64337769-64337488)
               

               
               1-291, gnl|Hg17|chr2 (220251958-220252238)
               


               
               562-836, gnl|bosTau2|chr2 (64336560-64336286)
               

               
               562-836, gnl|Hg17|chr2 (220253582-220253856)
               

               
               562-836, gnl|Mm7|chr1 (75724269-75724543)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-291, gnl|bosTau2|chr2 (64337769-64337488)
               

               
               1-291, gnl|Hg17|chr2 (220251958-220252238)
               


               
               562-836, gnl|bosTau2|chr2 (64336560-64336286)
               

               
               562-836, gnl|Hg17|chr2 (220253582-220253856)
               

               
               562-836, gnl|Mm7|chr1 (75724269-75724543)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cov (0.264306)
               

               
               nca (0.136874)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.264306)
               

               
               nca (0.136874)
               

               
               eru (0.120048)

	40-159, + strand, RNAz p=0.999039
	718-836, + strand, RNAz p=0.730444

	1-291, gnl\|bosTau2\|chr2 (64337769-64337488)
	1-291, gnl\|Hg17\|chr2 (220251958-220252238)

	562-836, gnl\|bosTau2\|chr2 (64336560-64336286)
	562-836, gnl\|Hg17\|chr2 (220253582-220253856)
	562-836, gnl\|Mm7\|chr1 (75724269-75724543)