Ss1.1-Ova1-OVRM10001D07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGATGGCGGCAGTGGTGGAGGTGGATGTTGGAGCAGGTGCTGCCGGGGAACGGGAGCT GGACGAGGTTGATATGTCAGACCTCTCTCCAGAAGAACAATGGAGGGTGGAGCATGCGCG CATGCATGCCAAGCACCGTGGCCACGAAGCCATGCACGCTGAAATGGTCCTCATCCTCAT CGCTACGCTGGTGGTGGCCCAGCTGCTCCTGGTTCAGTGGAAGCAGAGGCACCCCCGCTC CTACAACATGGTGACCCTCTTTCAGATGTGGGTTGTTCCCCTCTATTTCACAGTGAAGCT GCACTGGTGGAGGTTTCTAGTGATCTGGGTCTTGTTCTCCGCCGTCACAGCCTTTGTCAC CTTCCGAGCCACTCGAAAGCCACTAGTACAGACAACTCCAAGGTTGGTTTATAAATGGTT CCTGCTGATCTATAAAATCAGCTATGCCACTGGCATCGTTGGCTACATGGCTGTCATGTT TACTCTCTTTGGTCTTAACTTATTATTCAAGATCAAACCGGAAGATGCCATGGACTTTGG CATTTCTCTCCTCTTCTATGGCCTCTACTATGGTGTTCTTGAGCGAGACTTTGCAGAAAT GTGTGCAGACTACATGGCGTCTACCATAGGGTTCTACAGCAAGTCGGGCATGCCCACCAA ACACCTCTCGGACAGCGTGTGCGCCGTGTGTGGGCAGCAGATCTTTGTGGATGTCAGCGA AGAGGGCATCATCGAGAACACGTACAGGCTGTCTTGCAACCACGTGTTCCATGAGTTCTG CATCCGCGGCTGGTGCATCGTGGGAAAGAAGCAGACATGTCCCTACTGCCGGGAGAAGGT CGACCTCAAGAGGATGTTCAGCAACCCCTGGGAGAGGCCGCATGTGATGTACGGCCAGCT GCTGGACTGGCTTCGCTACCTGGTGGCCTGGCAGCCCGTCATCATTGGCCTGGTGCAAGG CATCAACTTCGTCCTGGGCCTGGAATAGTCAGGGAGGAGGGCTTCCGCCCCCGGACCTCG GGGCGCCCCCCGCCGCCGCCGGGAGGACTCACGGGGCAGCTGGGCCGCTCAGGGCCTCCG GCTGTGACGGGCTGGGGAGGGTACGACGGAGCGCCAGCCAGCGGGGCTGTCAGCAGTGGG GGCTTTTTAAAAGAAAACTATTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGATGGCGGCAGTGGTGGAGGTGGATGTTGGAGCAGGTGCTGCCGGGGAACGGGAGCT GGACGAGGTTGATATGTCAGACCTCTCTCCAGAAGAACAATGGAGGGTGGAGCATGCGCG CATGCATGCCAAGCACCGTGGCCACGAAGCCATGCACGCTGAAATGGTCCTCATCCTCAT CGCTACGCTGGTGGTGGCCCAGCTGCTCCTGGTTCAGTGGAAGCAGAGGCACCCCCGCTC CTACAACATGGTGACCCTCTTTCAGATGTGGGTTGTTCCCCTCTATTTCACAGTGAAGCT GCACTGGTGGAGGTTTCTAGTGATCTGGGTCTTGTTCTCCGCCGTCACAGCCTTTGTCAC CTTCCGAGCCACTCGAAAGCCACTAGTACAGACAACTCCAAGGTTGGTTTATAAATGGTT CCTGCTGATCTATAAAATCAGCTATGCCACTGGCATCGTTGGCTACATGGCTGTCATGTT TACTCTCTTTGGTCTTAACTTATTATTCAAGATCAAACCGGAAGATGCCATGGACTTTGG CATTTCTCTCCTCTTCTATGGCCTCTACTATGGTGTTCTTGAGCGAGACTTTGCAGAAAT GTGTGCAGACTACATGGCGTCTACCATAGGGTTCTACAGCAAGTCGGGCATGCCCACCAA ACACCTCTCGGACAGCGTGTGCGCCGTGTGTGGGCAGCAGATCTTTGTGGATGTCAGCGA AGAGGGCATCATCGAGAACACGTACAGGCTGTCTTGCAACCACGTGTTCCATGAGTTCTG CATCCGCGGCTGGTGCATCGTGGGAAAGAAGCAGACATGTCCCTACTGCCGGGAGAAGGT CGACCTCAAGAGGATGTTCAGCAACCCCTGGGAGAGGCCGCATGTGATGTACGGCCAGCT GCTGGACTGGCTTCGCTACCTGGTGGCCTGGCAGCCCGTCATCATTGGCCTGGTGCAAGG CATCAACTTCGTCCTGGGCCTGGAATAGTCAGGGAGGAGGGCTTCCGCCCCCGGACCTCG GGGCGCCCCCCGCCGCCGCCGGGAGGACTCACGGGGCAGCTGGGCCGCTCAGGGCCTCCG GCTGTGACGGGCTGGGGAGGGTACGACGGAGCGCCAGCCAGCGGGGCTGTCAGCAGTGGG GGCTTTTTAAAAGAAAACTATTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 248-366, + strand, RNAz p=0.709413 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 248-366, + strand, RNAz p=0.709413 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK094508, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 248-404, gnl|bosTau2|chr15 (30061740-30061584) | |
| 248-404, gnl|canFam2|chr21 (29106078-29105930) | |
| 248-404, gnl|danRer3|chr21 (40136723-40136871) | |
| 248-404, gnl|dasNov1|scaffold_47089 (6673-6525) | |
| 248-404, gnl|echTel1|scaffold_280449 (36236-36384) | |
| 248-404, gnl|fr1|chrUn (49675234-49675086) | |
| 248-404, gnl|galGal2|chr1_random (1041934-1042079) | |
| 248-404, gnl|hg17|chr11 (71371439-71371587) | |
| 248-404, gnl|Hg17|chr11 (71371455-71371611) | |
| 248-404, gnl|loxAfr1|scaffold_59103 (6079-6217) | |
| 248-404, gnl|mm7|chr7 (98081578-98081430) | |
| 248-404, gnl|Mm7|chr7 (98081560-98081404) | |
| 248-404, gnl|monDom2|scaffold_74 (6635743-6635596) | |
| 248-404, gnl|oryCun1|scaffold_88334 (4702-4554) | |
| 248-404, gnl|panTro1|chr9 (72639878-72640026) | |
| 248-404, gnl|rheMac2|chr14 (70019670-70019818) | |
| 248-404, gnl|rn3|chr1 (159580815-159580667) | |
| 248-404, gnl|tetNig1|chr7 (5175659-5175516) | |
| 248-404, gnl|xenTro1|scaffold_1044 (296575-296426) | |
| 631-792, gnl|bosTau2|chr15 (30040805-30040645) | |
| 631-792, gnl|Hg17|chr11 (71383412-71383572) | |
| 631-792, gnl|Mm7|chr7 (98070246-98070094) | |
| 868-1164, gnl|bosTau2|chr15 (30038547-30038226) | |
| 868-1164, gnl|Hg17|chr11 (71384889-71385224) | |
| 868-1164, gnl|Mm7|chr7 (98066591-98066264) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 248-404, gnl|bosTau2|chr15 (30061740-30061584) | |
| 248-404, gnl|canFam2|chr21 (29106078-29105930) | |
| 248-404, gnl|danRer3|chr21 (40136723-40136871) | |
| 248-404, gnl|dasNov1|scaffold_47089 (6673-6525) | |
| 248-404, gnl|echTel1|scaffold_280449 (36236-36384) | |
| 248-404, gnl|fr1|chrUn (49675234-49675086) | |
| 248-404, gnl|galGal2|chr1_random (1041934-1042079) | |
| 248-404, gnl|hg17|chr11 (71371439-71371587) | |
| 248-404, gnl|Hg17|chr11 (71371455-71371611) | |
| 248-404, gnl|loxAfr1|scaffold_59103 (6079-6217) | |
| 248-404, gnl|mm7|chr7 (98081578-98081430) | |
| 248-404, gnl|Mm7|chr7 (98081560-98081404) | |
| 248-404, gnl|monDom2|scaffold_74 (6635743-6635596) | |
| 248-404, gnl|oryCun1|scaffold_88334 (4702-4554) | |
| 248-404, gnl|panTro1|chr9 (72639878-72640026) | |
| 248-404, gnl|rheMac2|chr14 (70019670-70019818) | |
| 248-404, gnl|rn3|chr1 (159580815-159580667) | |
| 248-404, gnl|tetNig1|chr7 (5175659-5175516) | |
| 248-404, gnl|xenTro1|scaffold_1044 (296575-296426) | |
| 631-792, gnl|bosTau2|chr15 (30040805-30040645) | |
| 631-792, gnl|Hg17|chr11 (71383412-71383572) | |
| 631-792, gnl|Mm7|chr7 (98070246-98070094) | |
| 868-1164, gnl|bosTau2|chr15 (30038547-30038226) | |
| 868-1164, gnl|Hg17|chr11 (71384889-71385224) | |
| 868-1164, gnl|Mm7|chr7 (98066591-98066264) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cag (0.151194) | |
| pla (0.133672) | |
| eep (0.122564) | |
| jca (0.11396) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) | |
| pla (0.133672) | |
| eep (0.122564) | |
| jca (0.11396) |