Ss1.1-Ova1-OVRM10001E04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAAGTTTAGGAGGACCGCTGGATGCCCTGTTCCAGACAAAAGGAACAAGTACCAAGGCA GCAGGTCTTTTCGCTTCTCTGATTCAGGGACGTGCTGGACAAAAACCATGGAATTCATTT CCCCAGCAGTGATTATAATACTAGGTTGTGTTACTCTTTTGCTATTCCTTCAGTGGAAGA ACTTGCGTGGACCCCCGTGCATAGGGGGCTGGATTCCTTGGATTGGAGCTGGATTTGAAT TTGGAAAAGCCCCTCTAGAATTTATAGAGAAAGCAAGAATCAAGTATGGACCAATATTTA CAGTCTTGGCTATGGGTACCCGGATGACTTTTGTTACCGAAGAAGAGGGAATGAATGTGT TTCTAAAATCCAAAGAAGTAAATTTCGAACTAGCCGTGCAAAATCCCGTCTATCGTACAG CATCAATTCCAAAGAACATCTTTTTAAAACTGCATGAGAAACTTTATGTCATGATGAAAG GGAAAATGGGGACTTTCAACCTGTATCAATTCACTGGACAATTGACTGAAGAACTGCACA AACAGCTGGAGAATTTAGGCACTCATGGAACCATGGACCTGAATAACCTAGTAAGGCATC TCCTTTACCCGGTCACAGTGAACGTGCTCTTTAAAAAAGGTTTGTTTCCCACAAACGAGA GGAAAATCCGGGAGTTCCATCAGCACTTTCAAGCTTATGATGAAGGTTTTGAGTATGGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAAGTTTAGGAGGACCGCTGGATGCCCTGTTCCAGACAAAAGGAACAAGTACCAAGGCA GCAGGTCTTTTCGCTTCTCTGATTCAGGGACGTGCTGGACAAAAACCATGGAATTCATTT CCCCAGCAGTGATTATAATACTAGGTTGTGTTACTCTTTTGCTATTCCTTCAGTGGAAGA ACTTGCGTGGACCCCCGTGCATAGGGGGCTGGATTCCTTGGATTGGAGCTGGATTTGAAT TTGGAAAAGCCCCTCTAGAATTTATAGAGAAAGCAAGAATCAAGTATGGACCAATATTTA CAGTCTTGGCTATGGGTACCCGGATGACTTTTGTTACCGAAGAAGAGGGAATGAATGTGT TTCTAAAATCCAAAGAAGTAAATTTCGAACTAGCCGTGCAAAATCCCGTCTATCGTACAG CATCAATTCCAAAGAACATCTTTTTAAAACTGCATGAGAAACTTTATGTCATGATGAAAG GGAAAATGGGGACTTTCAACCTGTATCAATTCACTGGACAATTGACTGAAGAACTGCACA AACAGCTGGAGAATTTAGGCACTCATGGAACCATGGACCTGAATAACCTAGTAAGGCATC TCCTTTACCCGGTCACAGTGAACGTGCTCTTTAAAAAAGGTTTGTTTCCCACAAACGAGA GGAAAATCCGGGAGTTCCATCAGCACTTTCAAGCTTATGATGAAGGTTTTGAGTATGGGT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 178-288, + strand, RNAz p=0.93139 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 178-288, + strand, RNAz p=0.93139 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 60-288, gnl|bosTau2|chr23 (18973126-18973354) | |
| 60-288, gnl|canFam2|chr12 (17820719-17820859) | |
| 60-288, gnl|danRer3|chr20 (46187013-46187155) | |
| 60-288, gnl|dasNov1|scaffold_23116 (799-1027) | |
| 60-288, gnl|hg17|chr6 (46728097-46728237) | |
| 60-288, gnl|Hg17|chr6 (46728338-46728097) | |
| 60-288, gnl|mm7|chr17 (41788458-41788318) | |
| 60-288, gnl|Mm7|chr17 (41788212-41788456) | |
| 60-288, gnl|monDom2|scaffold_0 (193207654-193207514) | |
| 60-288, gnl|oryCun1|scaffold_200807 (29269-29409) | |
| 60-288, gnl|panTro1|chr5 (47477922-47478062) | |
| 60-288, gnl|rheMac2|chr4 (46479155-46479295) | |
| 60-288, gnl|rn3|chr9 (12999391-12999536) | |
| 60-288, gnl|xenTro1|scaffold_428 (185503-185363) | |
| 416-586, gnl|bosTau2|chr23 (18985373-18985543) | |
| 416-586, gnl|canFam2|chr12 (17804817-17805187) | |
| 416-586, gnl|echTel1|scaffold_319837 (185044-184732) | |
| 416-586, gnl|hg17|chr6 (46715042-46715391) | |
| 416-586, gnl|Hg17|chr6 (46715369-46715199) | |
| 416-586, gnl|loxAfr1|scaffold_10470 (10699-10358) | |
| 416-586, gnl|mm7|chr17 (41801122-41800809) | |
| 416-586, gnl|Mm7|chr17 (41800829-41800999) | |
| 416-586, gnl|monDom2|scaffold_0 (193220265-193219915) | |
| 416-586, gnl|oryCun1|scaffold_162646 (11263-10913) | |
| 416-586, gnl|panTro1|chr5 (47464867-47465216) | |
| 416-586, gnl|rheMac2|chr4 (46467308-46467656) | |
| 416-586, gnl|rn3|chr9 (12988852-12989179) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 60-288, gnl|bosTau2|chr23 (18973126-18973354) | |
| 60-288, gnl|canFam2|chr12 (17820719-17820859) | |
| 60-288, gnl|danRer3|chr20 (46187013-46187155) | |
| 60-288, gnl|dasNov1|scaffold_23116 (799-1027) | |
| 60-288, gnl|hg17|chr6 (46728097-46728237) | |
| 60-288, gnl|Hg17|chr6 (46728338-46728097) | |
| 60-288, gnl|mm7|chr17 (41788458-41788318) | |
| 60-288, gnl|Mm7|chr17 (41788212-41788456) | |
| 60-288, gnl|monDom2|scaffold_0 (193207654-193207514) | |
| 60-288, gnl|oryCun1|scaffold_200807 (29269-29409) | |
| 60-288, gnl|panTro1|chr5 (47477922-47478062) | |
| 60-288, gnl|rheMac2|chr4 (46479155-46479295) | |
| 60-288, gnl|rn3|chr9 (12999391-12999536) | |
| 60-288, gnl|xenTro1|scaffold_428 (185503-185363) | |
| 416-586, gnl|bosTau2|chr23 (18985373-18985543) | |
| 416-586, gnl|canFam2|chr12 (17804817-17805187) | |
| 416-586, gnl|echTel1|scaffold_319837 (185044-184732) | |
| 416-586, gnl|hg17|chr6 (46715042-46715391) | |
| 416-586, gnl|Hg17|chr6 (46715369-46715199) | |
| 416-586, gnl|loxAfr1|scaffold_10470 (10699-10358) | |
| 416-586, gnl|mm7|chr17 (41801122-41800809) | |
| 416-586, gnl|Mm7|chr17 (41800829-41800999) | |
| 416-586, gnl|monDom2|scaffold_0 (193220265-193219915) | |
| 416-586, gnl|oryCun1|scaffold_162646 (11263-10913) | |
| 416-586, gnl|panTro1|chr5 (47464867-47465216) | |
| 416-586, gnl|rheMac2|chr4 (46467308-46467656) | |
| 416-586, gnl|rn3|chr9 (12988852-12989179) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| ute (0.132784) | |
| pgl (0.118483) |