Ss1.1-Ova1-OVRM10002B02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCTGTTGGCCTACTGGAATGTCTTTACAAAGGCTCCTGCAGCAGAGTAGCAATGGCAA TTTTGTGGAGTACTGTGCTGGGCAAGCCTGTAGCTCTTACTCCACACTCACAGGCAGCTT TCCCATGGATGATAATAGAAGGCTTCAAATGCTGGCAGACACTGTGGCTACTTTACCTCG AGGAAGAAAGCAGCTTGCTCTGACGAGATCAAGTTCTTTGGGTGACTTTTCCTGGTCTCA AAGGAAGCTTGTTACTGTGGAAAAGCAAGATAATGGAACATTTGGATTTGAAATTCAGAC TTACAGGCTCCAGAACCAGAACACTTGCTCCTCAGAGATGTGCACTCTGATCTGCAAAAT CCAGGAGGATAGCCCAGCTCAGTGTGCTGGCCTGCAAGCTGGTGATGTCCTTGCAAATAT CAATGGTGTAAGCACGGAAGGCTTTACCCACAAACAAGTTGTTGACCTGATCAGATCGTC AGGAAACCTGCTAACGATAGAGACTCTTAATGGAACAATGATTCTCAAAAGAACAGAGCT TGAGGCAAAACTGCAAGTTTTAAAGCAAACCTTGAAGAAAAAATGGGTGGAGTTCAGATC TCTACAGTTACAGGAACAGCGCCTGCTTCATGGTGATGCGGCTAACTGCCCAAGTTTGGA AAACATGGACATAGACGAATCAACTTTGTTTGGAACCCTGCCTGGTCCAGCCCTCATGGA CCGGAATCGATTATCCAGTGAAAGCAGCTGTAAGAGCTGGCTGAGCTCCATGACCATAGA CAGTGAGGATGGCTACCAGACATGTGTGTCTGAGGACTCAAGCAAGGAAGCCTTCAGCCG GCAAACAAGCACAGATGATGAGTGCTTTATCCCCAAGGACGGGGAGGATTTTCTGAAGAG GTCTTCTTCAAGGAGGAACCGGAGTATTAGCTCTGCCAGCAGTGGGTCCATGTCTCCCTT GTGGGAAGGCAACTTCTCAAGCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCTGTTGGCCTACTGGAATGTCTTTACAAAGGCTCCTGCAGCAGAGTAGCAATGGCAA TTTTGTGGAGTACTGTGCTGGGCAAGCCTGTAGCTCTTACTCCACACTCACAGGCAGCTT TCCCATGGATGATAATAGAAGGCTTCAAATGCTGGCAGACACTGTGGCTACTTTACCTCG AGGAAGAAAGCAGCTTGCTCTGACGAGATCAAGTTCTTTGGGTGACTTTTCCTGGTCTCA AAGGAAGCTTGTTACTGTGGAAAAGCAAGATAATGGAACATTTGGATTTGAAATTCAGAC TTACAGGCTCCAGAACCAGAACACTTGCTCCTCAGAGATGTGCACTCTGATCTGCAAAAT CCAGGAGGATAGCCCAGCTCAGTGTGCTGGCCTGCAAGCTGGTGATGTCCTTGCAAATAT CAATGGTGTAAGCACGGAAGGCTTTACCCACAAACAAGTTGTTGACCTGATCAGATCGTC AGGAAACCTGCTAACGATAGAGACTCTTAATGGAACAATGATTCTCAAAAGAACAGAGCT TGAGGCAAAACTGCAAGTTTTAAAGCAAACCTTGAAGAAAAAATGGGTGGAGTTCAGATC TCTACAGTTACAGGAACAGCGCCTGCTTCATGGTGATGCGGCTAACTGCCCAAGTTTGGA AAACATGGACATAGACGAATCAACTTTGTTTGGAACCCTGCCTGGTCCAGCCCTCATGGA CCGGAATCGATTATCCAGTGAAAGCAGCTGTAAGAGCTGGCTGAGCTCCATGACCATAGA CAGTGAGGATGGCTACCAGACATGTGTGTCTGAGGACTCAAGCAAGGAAGCCTTCAGCCG GCAAACAAGCACAGATGATGAGTGCTTTATCCCCAAGGACGGGGAGGATTTTCTGAAGAG GTCTTCTTCAAGGAGGAACCGGAGTATTAGCTCTGCCAGCAGTGGGTCCATGTCTCCCTT GTGGGAAGGCAACTTCTCAAGCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 296-403, - strand, RNAz p=0.969342 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 296-403, - strand, RNAz p=0.969342 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 19-193, gnl|bosTau2|chr2 (26476373-26476550) | |
| 19-193, gnl|canFam2|chr36 (6463394-6463642) | |
| 19-193, gnl|dasNov1|scaffold_278 (177963-178185) | |
| 19-193, gnl|echTel1|scaffold_290701 (3325-3081) | |
| 19-193, gnl|hg17|chr2 (158125824-158126070) | |
| 19-193, gnl|Hg17|chr2 (158126041-158125867) | |
| 19-193, gnl|loxAfr1|scaffold_3481 (39386-39142) | |
| 19-193, gnl|mm7|chr2 (58160532-58160773) | |
| 19-193, gnl|Mm7|chr2 (58160744-58160570) | |
| 19-193, gnl|monDom2|scaffold_2 (50821071-50821307) | |
| 19-193, gnl|oryCun1|scaffold_200309 (193835-194080) | |
| 19-193, gnl|panTro1|chr13 (47322330-47322576) | |
| 19-193, gnl|rheMac2|chr12 (21041335-21041581) | |
| 19-193, gnl|rn3|chr3 (39817228-39817469) | |
| 296-403, gnl|bosTau2|chr2 (26489770-26489877) | |
| 296-403, gnl|canFam2|chr36 (6452986-6453129) | |
| 296-403, gnl|dasNov1|scaffold_278 (167593-167736) | |
| 296-403, gnl|echTel1|scaffold_325182 (49743-49887) | |
| 296-403, gnl|fr1|chrUn (25768025-25767907) | |
| 296-403, gnl|galGal2|chr7 (36848524-36848671) | |
| 296-403, gnl|hg17|chr2 (158112871-158113014) | |
| 296-403, gnl|Hg17|chr2 (158112985-158112878) | |
| 296-403, gnl|loxAfr1|scaffold_3481 (55564-55421) | |
| 296-403, gnl|mm7|chr2 (58148846-58148988) | |
| 296-403, gnl|Mm7|chr2 (58148959-58148852) | |
| 296-403, gnl|monDom2|scaffold_2 (50803347-50803492) | |
| 296-403, gnl|oryCun1|scaffold_200309 (180220-180364) | |
| 296-403, gnl|panTro1|chr13 (47309197-47309340) | |
| 296-403, gnl|rheMac2|chr12 (21027866-21028009) | |
| 296-403, gnl|rn3|chr3 (39806106-39806248) | |
| 632-984, gnl|bosTau2|chr2 (26504437-26504789) | |
| 632-984, gnl|Hg17|chr2 (158098164-158097806) | |
| 632-984, gnl|Mm7|chr2 (58134882-58134524) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 19-193, gnl|bosTau2|chr2 (26476373-26476550) | |
| 19-193, gnl|canFam2|chr36 (6463394-6463642) | |
| 19-193, gnl|dasNov1|scaffold_278 (177963-178185) | |
| 19-193, gnl|echTel1|scaffold_290701 (3325-3081) | |
| 19-193, gnl|hg17|chr2 (158125824-158126070) | |
| 19-193, gnl|Hg17|chr2 (158126041-158125867) | |
| 19-193, gnl|loxAfr1|scaffold_3481 (39386-39142) | |
| 19-193, gnl|mm7|chr2 (58160532-58160773) | |
| 19-193, gnl|Mm7|chr2 (58160744-58160570) | |
| 19-193, gnl|monDom2|scaffold_2 (50821071-50821307) | |
| 19-193, gnl|oryCun1|scaffold_200309 (193835-194080) | |
| 19-193, gnl|panTro1|chr13 (47322330-47322576) | |
| 19-193, gnl|rheMac2|chr12 (21041335-21041581) | |
| 19-193, gnl|rn3|chr3 (39817228-39817469) | |
| 296-403, gnl|bosTau2|chr2 (26489770-26489877) | |
| 296-403, gnl|canFam2|chr36 (6452986-6453129) | |
| 296-403, gnl|dasNov1|scaffold_278 (167593-167736) | |
| 296-403, gnl|echTel1|scaffold_325182 (49743-49887) | |
| 296-403, gnl|fr1|chrUn (25768025-25767907) | |
| 296-403, gnl|galGal2|chr7 (36848524-36848671) | |
| 296-403, gnl|hg17|chr2 (158112871-158113014) | |
| 296-403, gnl|Hg17|chr2 (158112985-158112878) | |
| 296-403, gnl|loxAfr1|scaffold_3481 (55564-55421) | |
| 296-403, gnl|mm7|chr2 (58148846-58148988) | |
| 296-403, gnl|Mm7|chr2 (58148959-58148852) | |
| 296-403, gnl|monDom2|scaffold_2 (50803347-50803492) | |
| 296-403, gnl|oryCun1|scaffold_200309 (180220-180364) | |
| 296-403, gnl|panTro1|chr13 (47309197-47309340) | |
| 296-403, gnl|rheMac2|chr12 (21027866-21028009) | |
| 296-403, gnl|rn3|chr3 (39806106-39806248) | |
| 632-984, gnl|bosTau2|chr2 (26504437-26504789) | |
| 632-984, gnl|Hg17|chr2 (158098164-158097806) | |
| 632-984, gnl|Mm7|chr2 (58134882-58134524) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) | |
| cbl (0.114797) | |
| cty (0.10408) |