Non-Coding RNA Search

Ss1.1-Ova1-OVRM10002D09.5

Sequence:


               
               CGCGGAGCGGGCGGGCCGGTGCGCCTGAGTCCATGTGGGCGCCGGCGCGGCAGGGAGCAG
CTGGGGTCGCCATGGCGGAGCTGCAGCAGCTCCGGGTGCAGGAGGCAGTGGACTCCATGG
TGAAGAATCTGGAGAGAGAGAACATCCGGAAGATGCAGGGCCTCATGTTCCGGTGCAGTG
CTGGCTGCTGTGAGGACAGCCAGGCATCCATGCAGCAGGTGCATCAGTGCATCGAGCGCT
GCCATGCACCTCTGGCTCAAGCCCAGGCCCTGGTCACCAGTGAGTTGGAGAAGTTCCAGG
ACCGCCTGGCCCGGTGCACTTTGCACTGCAACGACAAAGCCAAAGATTCAATAGACGCAG
GGAGTAAGGAGCTCCAGGTGAAGCGGCAGCTGGAGTGTTGTGTGACCAAGTGTGTGGATG
ACCACATGAACCTCATCCCAACCATGACCAAGAAGATGAAGGAGTCACTCTCGTCCATGG
GGAAATAGAAGTCTGCTGTTGGCCATTGGGGCAGAGGGCAGGAATCTATTTAAAAAGAGG
AATGGGGGTTTTGGGTCTTTTAAGCAAAGTTTATGAATGAAGAAAATTATGGATGGCAGC
AAGTTTAAGGCCTCTGTCACTTGCCTCTGGATACTGGTTCCTTTGTGTTTCAGTCCTAGA
AAGTGAAATGGAAAAAAAACTGGTGCTAAAATTTGGGTCAGGGTTTGCATGAGAGAGTTT
CTGAGCCTCAGTTTCACGTGGCCAGTGCTTATCCTGGCAGTGGGGAGCCTCCCTTGTAGC
AAACCAGAGCCCTCCGAGGTACCAGATTCTCTTAGTACCCAGGTACCAACAGGCTGGCAG
TTTCCTCTAACCTGCCTGTGGTCCAGTGGAGTGTGAGAGGTGTTTCTGTTTATTGCCAGC
CAACCTCCTGTTTACCAGAAGGATCAACACACATTGATCCAACACGCCATTTTCCACAAA
CTACAGTAAAACAAGATTCGCAAGGTCACCAGTTTAGGAGGTGGAAGGGGGCTTCCAGGG
TTTTGTTTTGCTTGGTTTTCTTTTATACACAAGGGCATGAAGTTACCTTAAGACGTGGAG
TTGGGAGCGGTAGTTTGGATAAGAACTTTGAAAGGGTCCTTGTGAGTATTCATTTCTGAC
CATTGAGATGTAGATGTGCCTTATTTAAAATGCTCACACATTTACATCTTTCAGCCTGAA
GACCCTGCAGAAATATGAGAGGTGATGTCACACTGGTATGGGAAGCAAATCTTCCCTTTC
ACAGGTAGCCACGATGGGCCCTAAGGCTGCAGCAGAGGGACAGAACAATCTTACGATGAC
ACTCACCCTTGAAGGGGATCTTGATTGTGCTGTATACTAGGACTTAGGCATGAACAGTGA
AAGAGAAACTTTTATCTTCTTAATTAAGAGAGTTGTGAAGTACTGGATTTGGAAAAATCT
GGTTTTCATAAAACAGATAGAATGAAAGCCTAAACCCAGTATTGCTTACTTTGCCACCTG
AAATAACAAGGCTCTATTGAGACAATCCCTTGGCAACATGAAGGTCAAGGGAGAAAAAGC
AACTCAGGGGCCAGCTGTGACTTCTTGGAAAAGAGGGACAGCCCCTCATTACCAAATACC
AATTTTGTCAGGGCCTTTGGTTCCTGCCCCAGTTCTGGCACCTTATTGTTTTGATAAGGA
CCTTGTTGTCTTTTTACCAACTTAATTACTTGAAATATAATATAGCCTGTCTGTTCGCTG
TTTCAAGACCGTGATATATTTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGGAGCGGGCGGGCCGGTGCGCCTGAGTCCATGTGGGCGCCGGCGCGGCAGGGAGCAG
CTGGGGTCGCCATGGCGGAGCTGCAGCAGCTCCGGGTGCAGGAGGCAGTGGACTCCATGG
TGAAGAATCTGGAGAGAGAGAACATCCGGAAGATGCAGGGCCTCATGTTCCGGTGCAGTG
CTGGCTGCTGTGAGGACAGCCAGGCATCCATGCAGCAGGTGCATCAGTGCATCGAGCGCT
GCCATGCACCTCTGGCTCAAGCCCAGGCCCTGGTCACCAGTGAGTTGGAGAAGTTCCAGG
ACCGCCTGGCCCGGTGCACTTTGCACTGCAACGACAAAGCCAAAGATTCAATAGACGCAG
GGAGTAAGGAGCTCCAGGTGAAGCGGCAGCTGGAGTGTTGTGTGACCAAGTGTGTGGATG
ACCACATGAACCTCATCCCAACCATGACCAAGAAGATGAAGGAGTCACTCTCGTCCATGG
GGAAATAGAAGTCTGCTGTTGGCCATTGGGGCAGAGGGCAGGAATCTATTTAAAAAGAGG
AATGGGGGTTTTGGGTCTTTTAAGCAAAGTTTATGAATGAAGAAAATTATGGATGGCAGC
AAGTTTAAGGCCTCTGTCACTTGCCTCTGGATACTGGTTCCTTTGTGTTTCAGTCCTAGA
AAGTGAAATGGAAAAAAAACTGGTGCTAAAATTTGGGTCAGGGTTTGCATGAGAGAGTTT
CTGAGCCTCAGTTTCACGTGGCCAGTGCTTATCCTGGCAGTGGGGAGCCTCCCTTGTAGC
AAACCAGAGCCCTCCGAGGTACCAGATTCTCTTAGTACCCAGGTACCAACAGGCTGGCAG
TTTCCTCTAACCTGCCTGTGGTCCAGTGGAGTGTGAGAGGTGTTTCTGTTTATTGCCAGC
CAACCTCCTGTTTACCAGAAGGATCAACACACATTGATCCAACACGCCATTTTCCACAAA
CTACAGTAAAACAAGATTCGCAAGGTCACCAGTTTAGGAGGTGGAAGGGGGCTTCCAGGG
TTTTGTTTTGCTTGGTTTTCTTTTATACACAAGGGCATGAAGTTACCTTAAGACGTGGAG
TTGGGAGCGGTAGTTTGGATAAGAACTTTGAAAGGGTCCTTGTGAGTATTCATTTCTGAC
CATTGAGATGTAGATGTGCCTTATTTAAAATGCTCACACATTTACATCTTTCAGCCTGAA
GACCCTGCAGAAATATGAGAGGTGATGTCACACTGGTATGGGAAGCAAATCTTCCCTTTC
ACAGGTAGCCACGATGGGCCCTAAGGCTGCAGCAGAGGGACAGAACAATCTTACGATGAC
ACTCACCCTTGAAGGGGATCTTGATTGTGCTGTATACTAGGACTTAGGCATGAACAGTGA
AAGAGAAACTTTTATCTTCTTAATTAAGAGAGTTGTGAAGTACTGGATTTGGAAAAATCT
GGTTTTCATAAAACAGATAGAATGAAAGCCTAAACCCAGTATTGCTTACTTTGCCACCTG
AAATAACAAGGCTCTATTGAGACAATCCCTTGGCAACATGAAGGTCAAGGGAGAAAAAGC
AACTCAGGGGCCAGCTGTGACTTCTTGGAAAAGAGGGACAGCCCCTCATTACCAAATACC
AATTTTGTCAGGGCCTTTGGTTCCTGCCCCAGTTCTGGCACCTTATTGTTTTGATAAGGA
CCTTGTTGTCTTTTTACCAACTTAATTACTTGAAATATAATATAGCCTGTCTGTTCGCTG
TTTCAAGACCGTGATATATTTTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13385042|ref|NP_079867.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13385042|ref|NP_079867.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               26-1604, - strand, RNAz p=0.990352

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               26-1604, - strand, RNAz p=0.990352

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               26-1195, gnl|bosTau2|chr22 (12553045-12554172)
               

               
               26-1195, gnl|Hg17|chr6 (2990591-2991706)
               

               
               26-1195, gnl|Mm7|chr8 (4619205-4620283)
               


               
               1228-1604, gnl|bosTau2|chr22 (30141255-30140862)
               

               
               1228-1604, gnl|Hg17|chr6 (75049830-75050214)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-1195, gnl|bosTau2|chr22 (12553045-12554172)
               

               
               26-1195, gnl|Hg17|chr6 (2990591-2991706)
               

               
               26-1195, gnl|Mm7|chr8 (4619205-4620283)
               


               
               1228-1604, gnl|bosTau2|chr22 (30141255-30140862)
               

               
               1228-1604, gnl|Hg17|chr6 (75049830-75050214)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cbl (0.344392)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               nep (0.183925)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               nep (0.183925)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	26-1195, gnl\|bosTau2\|chr22 (12553045-12554172)
	26-1195, gnl\|Hg17\|chr6 (2990591-2991706)
	26-1195, gnl\|Mm7\|chr8 (4619205-4620283)

	1228-1604, gnl\|bosTau2\|chr22 (30141255-30140862)
	1228-1604, gnl\|Hg17\|chr6 (75049830-75050214)

	cbl (0.344392)
	cst (0.280073)
	fce (0.271592)
	ova (0.258264)
	nep (0.183925)
	spl (0.143184)
	pty (0.142714)
	hlv (0.139256)
	che (0.136314)
	pla (0.133672)
	ute (0.132784)
	ebs (0.118301)
	med (0.116252)
	ldo (0.0970026)