Non-Coding RNA Search

Ss1.1-Ova1-OVRM10004A11.5

Sequence:


               
               CCTCTCGGTCTGTGGCAGCCGCGTTAACCCGGCTCCGGGAGCTGAGAGCGAGGGGAGGCG
GAGACGGAGGAAGGTCCGAGGAGCAGCTCCGGTCTCCGCCGAGCCGCCACCGCAGGCCGA
GGACGGTCGGACTCCCGCGGCGGGAGGAGCCTGTTCCCCTGAGGATCTCTGAAGTACATA
CACCATACTACGGCTTTAAATATCCTGCGTGGACAATGGCTACCCAAGCTGATTTGATGG
AGCTGGACATGGCTATGGAGCCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGT
CTTACCTGGACTCTGGAATCCATTCTGGTGCCACGACCACAGCTCCTTCTCTAAGTGGTA
AAGGCAATCCTGAAGAAGAGGATGTGGATACCACCCAAGTCCTATATGAGTGGGAGCAGG
GATTTTCTCAGTCCTTCACTCAAGAACAAGTGGCTGATATTGATGGACAGTATGCAATGA
CTCGCGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGA
TCCCATCTACACAGTTTGACGCTGCTCATCCCACTAATGTCCAGCGTCTGGCTGAACCAT
CACAGATGCTGAAACATGCAGTTGTAAATTTGATTAACTATCAAGATGATGCAGAACTTG
CCACACGTGCAATCCCCGAATTGACAAAATTGCTAAATGATGAAGACCAGGTAGTGGTGA
ATAAGGCTGCAGTTATGGTCCATCAGCTTTCCAAAAAGGAAGCTTCCAGACATGCCATCA
TGCGTTCTCCTCAGATGGTGTCTGCAATTGTACGTACCATGCAGAATACAAATGATGTAG
AAACGGCTCGCTGTACTGCTGGGACCTTGCACAATCTTTCCCATCATCGTGAGGGCTTGC
TGGCCATCTTTAAATCTGGGGGCATTCCTGCCCTAGTGAAGATGCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCTCGGTCTGTGGCAGCCGCGTTAACCCGGCTCCGGGAGCTGAGAGCGAGGGGAGGCG
GAGACGGAGGAAGGTCCGAGGAGCAGCTCCGGTCTCCGCCGAGCCGCCACCGCAGGCCGA
GGACGGTCGGACTCCCGCGGCGGGAGGAGCCTGTTCCCCTGAGGATCTCTGAAGTACATA
CACCATACTACGGCTTTAAATATCCTGCGTGGACAATGGCTACCCAAGCTGATTTGATGG
AGCTGGACATGGCTATGGAGCCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGT
CTTACCTGGACTCTGGAATCCATTCTGGTGCCACGACCACAGCTCCTTCTCTAAGTGGTA
AAGGCAATCCTGAAGAAGAGGATGTGGATACCACCCAAGTCCTATATGAGTGGGAGCAGG
GATTTTCTCAGTCCTTCACTCAAGAACAAGTGGCTGATATTGATGGACAGTATGCAATGA
CTCGCGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGA
TCCCATCTACACAGTTTGACGCTGCTCATCCCACTAATGTCCAGCGTCTGGCTGAACCAT
CACAGATGCTGAAACATGCAGTTGTAAATTTGATTAACTATCAAGATGATGCAGAACTTG
CCACACGTGCAATCCCCGAATTGACAAAATTGCTAAATGATGAAGACCAGGTAGTGGTGA
ATAAGGCTGCAGTTATGGTCCATCAGCTTTCCAAAAAGGAAGCTTCCAGACATGCCATCA
TGCGTTCTCCTCAGATGGTGTCTGCAATTGTACGTACCATGCAGAATACAAATGATGTAG
AAACGGCTCGCTGTACTGCTGGGACCTTGCACAATCTTTCCCATCATCGTGAGGGCTTGC
TGGCCATCTTTAAATCTGGGGGCATTCCTGCCCTAGTGAAGATGCTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q58I32_RABIT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q58I32_RABIT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               38-154, + strand, RNAz p=0.552824
               

               
               535-694, - strand, RNAz p=0.713707

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-154, + strand, RNAz p=0.552824
               

               
               535-694, - strand, RNAz p=0.713707

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001904, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001904, +

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-164, gnl|bosTau2|chr22 (13068052-13068215)
               

               
               1-164, gnl|Hg17|chr3 (41216003-41216166)
               

               
               1-164, gnl|Mm7|chr9 (120631825-120631973)
               


               
               25-135, gnl|bosTau2|chr12 (4097564-4097454)
               

               
               25-135, gnl|Hg17|chr3 (41216027-41216137)
               


               
               456-713, gnl|bosTau2|chr20 (14643980-14643723)
               

               
               456-713, gnl|Hg17|chr3 (41241448-41241705)
               

               
               456-713, gnl|Mm7|chr9 (120649227-120649484)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-164, gnl|bosTau2|chr22 (13068052-13068215)
               

               
               1-164, gnl|Hg17|chr3 (41216003-41216166)
               

               
               1-164, gnl|Mm7|chr9 (120631825-120631973)
               


               
               25-135, gnl|bosTau2|chr12 (4097564-4097454)
               

               
               25-135, gnl|Hg17|chr3 (41216027-41216137)
               


               
               456-713, gnl|bosTau2|chr20 (14643980-14643723)
               

               
               456-713, gnl|Hg17|chr3 (41241448-41241705)
               

               
               456-713, gnl|Mm7|chr9 (120649227-120649484)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ill (0.351185)
               

               
               mcp (0.170648)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               mcp (0.170648)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	38-154, + strand, RNAz p=0.552824
	535-694, - strand, RNAz p=0.713707

	1-164, gnl\|bosTau2\|chr22 (13068052-13068215)
	1-164, gnl\|Hg17\|chr3 (41216003-41216166)
	1-164, gnl\|Mm7\|chr9 (120631825-120631973)

	25-135, gnl\|bosTau2\|chr12 (4097564-4097454)
	25-135, gnl\|Hg17\|chr3 (41216027-41216137)

	456-713, gnl\|bosTau2\|chr20 (14643980-14643723)
	456-713, gnl\|Hg17\|chr3 (41241448-41241705)
	456-713, gnl\|Mm7\|chr9 (120649227-120649484)

	ill (0.351185)
	mcp (0.170648)
	nmm (0.132802)
	eep (0.122564)
	eru (0.120048)
	ecc (0.115035)