Non-Coding RNA Search

Ss1.1-Ova1-OVRM10005D05.5

Sequence:


               
               TGGATAAAGTCTCTCCTTCCCCTGCAGGGGCGGCGGCGAGTCCCCGCGGGAGCCCAGGGT
GTCAGAAGCAGGGGCAGAAGCAACAAAGTTCCCGGGTTGTGTCCGAGGCCGCGGTCTGGG
TTGCTCGTTCGGCCTCCCCTTCCTCACCAAGGCAATGGCTTCCAAACTCCTGCGCGCGGT
CATCCTTGGGCCGCCCGGCTCGGGCAAGGGCACCGTGTGCCAGAGGATCGCCCAGAACTT
TGGCCTCCAGCATCTCTCCAGCGGCCACTTCCTGCGGGAGAACATCAAGGCCAACACGGA
AGTTGGTGATATGGCAAAGCAGTACATAGAGAAAGGTCTCTTGGTCCCAGACCACTTGAT
CACACGCCTCATGCTGTCGGAGCTGGAGAATAGGCGTGGCCAGCACTGGCTACTGGATGG
TTTTCCTAGAACATTAGTTCAGGCTGAAGCCTTGGACAAAATATGTGACCTGGATCTAGT
GATCACTTTGAACATTCCATTTGAAACGCTCAAAGATCGTCTCAGCCGGCGCTGGATTCA
CCCTTCTAGTGGAAGGGTGTATAACCTGGACTTCAACCCACCTCATGTACATGGGATTGA
TGATATTACTGGTGAGCCATTGATCCAGCAGGAAGACGACAAACCTGAAGCAGTTGCTGC
CAGACTAAGACAGTACAAGGATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGATAAAGTCTCTCCTTCCCCTGCAGGGGCGGCGGCGAGTCCCCGCGGGAGCCCAGGGT
GTCAGAAGCAGGGGCAGAAGCAACAAAGTTCCCGGGTTGTGTCCGAGGCCGCGGTCTGGG
TTGCTCGTTCGGCCTCCCCTTCCTCACCAAGGCAATGGCTTCCAAACTCCTGCGCGCGGT
CATCCTTGGGCCGCCCGGCTCGGGCAAGGGCACCGTGTGCCAGAGGATCGCCCAGAACTT
TGGCCTCCAGCATCTCTCCAGCGGCCACTTCCTGCGGGAGAACATCAAGGCCAACACGGA
AGTTGGTGATATGGCAAAGCAGTACATAGAGAAAGGTCTCTTGGTCCCAGACCACTTGAT
CACACGCCTCATGCTGTCGGAGCTGGAGAATAGGCGTGGCCAGCACTGGCTACTGGATGG
TTTTCCTAGAACATTAGTTCAGGCTGAAGCCTTGGACAAAATATGTGACCTGGATCTAGT
GATCACTTTGAACATTCCATTTGAAACGCTCAAAGATCGTCTCAGCCGGCGCTGGATTCA
CCCTTCTAGTGGAAGGGTGTATAACCTGGACTTCAACCCACCTCATGTACATGGGATTGA
TGATATTACTGGTGAGCCATTGATCCAGCAGGAAGACGACAAACCTGAAGCAGTTGCTGC
CAGACTAAGACAGTACAAGGATGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55733637|emb|CAH93495.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55733637|emb|CAH93495.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               415-654, - strand, RNAz p=0.799669

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               415-654, - strand, RNAz p=0.799669

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               19-683, gnl|bosTau2|chr19 (5990149-5989485)
               

               
               19-683, gnl|Hg17|chr17 (26696524-26697191)
               

               
               19-683, gnl|Mm7|chr2 (72477562-72478174)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-683, gnl|bosTau2|chr19 (5990149-5989485)
               

               
               19-683, gnl|Hg17|chr17 (26696524-26697191)
               

               
               19-683, gnl|Mm7|chr2 (72477562-72478174)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eli (0.151814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)

	19-683, gnl\|bosTau2\|chr19 (5990149-5989485)
	19-683, gnl\|Hg17\|chr17 (26696524-26697191)
	19-683, gnl\|Mm7\|chr2 (72477562-72478174)