Non-Coding RNA Search

Ss1.1-Ova1-OVRM10005E10.5

Sequence:


               
               ATGGCAGCGGTTGGGTCTGGCGGTTCCCCCGCGGCGGCCGGGCCAGGGGCGGTCTCCGCG
GGGGCGTTGGAGCCTGGGACCGCGAGTGCGGCTCACCGGCGCCTCAAATACATATCCCTA
GCCGTGCTGGTGGTCCAGAATGCCTCCCTCATCCTCAGCATCCGCTACGCCCGCACGCTG
CCTGGGGACCGCTTCTTTGCCACCACTGCTGTGGTCATGGCTGAAGTGCTCAAAGGTCTC
ACCTGCCTGCTGCTGCTCTTTGCACAGAAGAGGGGTAACGTGAAGCACCTGGTTCTTTTC
CTCCACGAGGCCGTCCTGGTGCAGTACGTGGACACACTCAAGCTCGCAGTGCCCTCTCTC
ATCTACACCTTGCAGAATAACCTCCAGTATGTTGCCATCTCCAACCTGCCAGCGGCCACT
TTCCAGGTGACGTACCAGCTGAAGATCCTGACCACGGCACTGTTCTCCGTGCTGATGCTG
AACCGCAGCCTGTCCCGGCTGCAGTGGGCCTCCCTGCTGCTCCTCTTCACCGGCGTCGCC
ATCGTGCAGGCACAGCAAGCCGGCGGTGGGGGCCCTCGGCCGCTGGATCAGAACCCTGGG
GCGGGCCTAGCCGCTGTCGTGGCCTCCTGTCTCTCCTCGGGCTTCGCAGGTGTCTACTTT
GAGAAGATCCTCAAAGGCAGCTCAAGGCTCCGTGTGCTGCGCAACCTGGCAGCTGGGCCT
TTCGGCACGGCGCTGGGCCTGGTGGGGCTCTGGTGGGCCGAGGGCACTGCTGTGGCCCGC
CGTGGCTTCTTTTTCGGGTACACGCCTGCCGTCTGGGGCGTGGTGCTCAACCAGGCCTTC
GGCGGCCTCCTAGTGGCTGTCGTCGTCAAGTACGCCGACAACATCCTCAAGGGCTTTGCC
ACCTCCTTGTCCATTGTGCTGTCCACCGTTGCCTCCATCCGCCTCTTCGGCTTCCACGTG
GACCCGCTGTTTGCCCTTGGCGCTGGGCTGGTCATCGGTGCCGTCTACCTCTACAGCCTT
CCCCGCGGTGCAGCCAAAGCCATAGCTTCCACCTCCGCCTCTGCCTCCGGGCCCTGCACC
CACCAGCAGCCTCCAGGGCAGCCGCCGCCACCGCAGCTGTCTTCCCACCGCGGAGACCTC
AGCACGGAGCCCTTTCTGCCAAAGTTGCTCACCAGGGTGAAGGGTTCCTAGCCGCTGGGA
ATGAAGACGCTGGCCTGGCCTCGATCCCCCTTCTTGCCCTGGCCCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGCAGCGGTTGGGTCTGGCGGTTCCCCCGCGGCGGCCGGGCCAGGGGCGGTCTCCGCG
GGGGCGTTGGAGCCTGGGACCGCGAGTGCGGCTCACCGGCGCCTCAAATACATATCCCTA
GCCGTGCTGGTGGTCCAGAATGCCTCCCTCATCCTCAGCATCCGCTACGCCCGCACGCTG
CCTGGGGACCGCTTCTTTGCCACCACTGCTGTGGTCATGGCTGAAGTGCTCAAAGGTCTC
ACCTGCCTGCTGCTGCTCTTTGCACAGAAGAGGGGTAACGTGAAGCACCTGGTTCTTTTC
CTCCACGAGGCCGTCCTGGTGCAGTACGTGGACACACTCAAGCTCGCAGTGCCCTCTCTC
ATCTACACCTTGCAGAATAACCTCCAGTATGTTGCCATCTCCAACCTGCCAGCGGCCACT
TTCCAGGTGACGTACCAGCTGAAGATCCTGACCACGGCACTGTTCTCCGTGCTGATGCTG
AACCGCAGCCTGTCCCGGCTGCAGTGGGCCTCCCTGCTGCTCCTCTTCACCGGCGTCGCC
ATCGTGCAGGCACAGCAAGCCGGCGGTGGGGGCCCTCGGCCGCTGGATCAGAACCCTGGG
GCGGGCCTAGCCGCTGTCGTGGCCTCCTGTCTCTCCTCGGGCTTCGCAGGTGTCTACTTT
GAGAAGATCCTCAAAGGCAGCTCAAGGCTCCGTGTGCTGCGCAACCTGGCAGCTGGGCCT
TTCGGCACGGCGCTGGGCCTGGTGGGGCTCTGGTGGGCCGAGGGCACTGCTGTGGCCCGC
CGTGGCTTCTTTTTCGGGTACACGCCTGCCGTCTGGGGCGTGGTGCTCAACCAGGCCTTC
GGCGGCCTCCTAGTGGCTGTCGTCGTCAAGTACGCCGACAACATCCTCAAGGGCTTTGCC
ACCTCCTTGTCCATTGTGCTGTCCACCGTTGCCTCCATCCGCCTCTTCGGCTTCCACGTG
GACCCGCTGTTTGCCCTTGGCGCTGGGCTGGTCATCGGTGCCGTCTACCTCTACAGCCTT
CCCCGCGGTGCAGCCAAAGCCATAGCTTCCACCTCCGCCTCTGCCTCCGGGCCCTGCACC
CACCAGCAGCCTCCAGGGCAGCCGCCGCCACCGCAGCTGTCTTCCCACCGCGGAGACCTC
AGCACGGAGCCCTTTCTGCCAAAGTTGCTCACCAGGGTGAAGGGTTCCTAGCCGCTGGGA
ATGAAGACGCTGGCCTGGCCTCGATCCCCCTTCTTGCCCTGGCCCAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               S35A2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               S35A2_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               630-747, + strand, RNAz p=0.773457
               

               
               788-907, - strand, RNAz p=0.918577

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               630-747, + strand, RNAz p=0.773457
               

               
               788-907, - strand, RNAz p=0.918577

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               91-277, gnl|bosTau2|chrX (26211148-26211334)
               

               
               91-277, gnl|Hg17|chrX (48523522-48523336)
               

               
               91-277, gnl|Mm7|chrX (6318898-6319084)
               


               
               563-1165, gnl|bosTau2|chrX (26214758-26215360)
               

               
               563-1165, gnl|Hg17|chrX (48518963-48518269)
               

               
               563-1165, gnl|Mm7|chrX (6325334-6326019)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-277, gnl|bosTau2|chrX (26211148-26211334)
               

               
               91-277, gnl|Hg17|chrX (48523522-48523336)
               

               
               91-277, gnl|Mm7|chrX (6318898-6319084)
               


               
               563-1165, gnl|bosTau2|chrX (26214758-26215360)
               

               
               563-1165, gnl|Hg17|chrX (48518963-48518269)
               

               
               563-1165, gnl|Mm7|chrX (6325334-6326019)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	630-747, + strand, RNAz p=0.773457
	788-907, - strand, RNAz p=0.918577

	91-277, gnl\|bosTau2\|chrX (26211148-26211334)
	91-277, gnl\|Hg17\|chrX (48523522-48523336)
	91-277, gnl\|Mm7\|chrX (6318898-6319084)

	563-1165, gnl\|bosTau2\|chrX (26214758-26215360)
	563-1165, gnl\|Hg17\|chrX (48518963-48518269)
	563-1165, gnl\|Mm7\|chrX (6325334-6326019)