Non-Coding RNA Search

Ss1.1-Ova1-OVRM10007E05.5

Sequence:


               
               GCCACCCCCCCACGCTCCCAGCCCCGCCGGCGGCTCCCTGCCTGCAGAGTCCTGGGCGCA
CCGCCGACCCTCCTCTGCTTCTCTGACTTCTGCCTGGAGACTTGGGCACAAGGGCTTTCT
CGTGTATGACCGACCTTTCCACCTGGCACCCCACCACGCCGACTCAGTGTCTCTACAGAG
GAGCAGCGCCCCCCAGCCCAGCTCTGGAGGGAAGGGGACCTCACTGCTTTGGAGCTGGCT
GGCCCGCGGGGCTGGAAGATGCCGTGGCTGGAAGATGCTGTGGCTCGAAGATGCTGATGC
TGAAAGATGCCGGGGCTGGAAGATGCCAGGGCTGAGGGTTGACCCATCTGTAGCACTTAC
CTGTAGAGACCGACAGGCCTGGGGGCATTTCCCGCTGAGTGGCGGGGAGAGGTCAGAATT
CCCTCTGTTTTCTGGGAAGGTCTCATTTAGATGTCAACTTGTTTTTGCACATGTTTCCTG
TAGTTTCTTTGTTCGTAGCCCAGTAGATTTGTTACTTCCGAGGTAAGTTAAGTAAGTTGA
TTTGGTTATGCCCATCTCGCTTCCCTAATCTACGGCCAGGAGACAGCATCAGGGTTAAGA
AGACTTTTTGTTTTCATTTTTTTGTTGTTGTGTTTTTTTTTTGTTGGTTTTTTTTTGGGT
TTTTTTTTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACCCCCCCACGCTCCCAGCCCCGCCGGCGGCTCCCTGCCTGCAGAGTCCTGGGCGCA
CCGCCGACCCTCCTCTGCTTCTCTGACTTCTGCCTGGAGACTTGGGCACAAGGGCTTTCT
CGTGTATGACCGACCTTTCCACCTGGCACCCCACCACGCCGACTCAGTGTCTCTACAGAG
GAGCAGCGCCCCCCAGCCCAGCTCTGGAGGGAAGGGGACCTCACTGCTTTGGAGCTGGCT
GGCCCGCGGGGCTGGAAGATGCCGTGGCTGGAAGATGCTGTGGCTCGAAGATGCTGATGC
TGAAAGATGCCGGGGCTGGAAGATGCCAGGGCTGAGGGTTGACCCATCTGTAGCACTTAC
CTGTAGAGACCGACAGGCCTGGGGGCATTTCCCGCTGAGTGGCGGGGAGAGGTCAGAATT
CCCTCTGTTTTCTGGGAAGGTCTCATTTAGATGTCAACTTGTTTTTGCACATGTTTCCTG
TAGTTTCTTTGTTCGTAGCCCAGTAGATTTGTTACTTCCGAGGTAAGTTAAGTAAGTTGA
TTTGGTTATGCCCATCTCGCTTCCCTAATCTACGGCCAGGAGACAGCATCAGGGTTAAGA
AGACTTTTTGTTTTCATTTTTTTGTTGTTGTGTTTTTTTTTTGTTGGTTTTTTTTTGGGT
TTTTTTTTTTTG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-233, gnl|bosTau2|chr11 (61255846-61255598)
               

               
               1-233, gnl|Hg17|chr2 (20324058-20323814)
               

               
               1-233, gnl|Mm7|chr12 (8818142-8818371)
               


               
               319-624, gnl|bosTau2|chr11 (61255596-61255270)
               

               
               319-624, gnl|Hg17|chr2 (20323791-20323485)
               

               
               319-624, gnl|Mm7|chr12 (8818373-8818716)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-233, gnl|bosTau2|chr11 (61255846-61255598)
               

               
               1-233, gnl|Hg17|chr2 (20324058-20323814)
               

               
               1-233, gnl|Mm7|chr12 (8818142-8818371)
               


               
               319-624, gnl|bosTau2|chr11 (61255596-61255270)
               

               
               319-624, gnl|Hg17|chr2 (20323791-20323485)
               

               
               319-624, gnl|Mm7|chr12 (8818373-8818716)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               col (0.195008)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)

	1-233, gnl\|bosTau2\|chr11 (61255846-61255598)
	1-233, gnl\|Hg17\|chr2 (20324058-20323814)
	1-233, gnl\|Mm7\|chr12 (8818142-8818371)

	319-624, gnl\|bosTau2\|chr11 (61255596-61255270)
	319-624, gnl\|Hg17\|chr2 (20323791-20323485)
	319-624, gnl\|Mm7\|chr12 (8818373-8818716)