Non-Coding RNA Search

Ss1.1-Ova1-OVRM10008G04.5

Sequence:


               
               ATTCTATGGGCAAAGAGATGAGGAGAAGGAAGAGTATAACCATTATTACTTTCCCTTAGT
ACTTCTGAACAATTTTTTTTTTTCTTTTTAGGGTTGCACCTGTGGCTTATGGAAGTACCC
------------------------------------------------------------
------------------------------------------------CTCATGGATACT
GCTCGGGTTACCGCTGAGCCAAAATGGGAACTCCCCGAACAATTTTTTAATAATCTAGGT
CCATATTTAAAATTCAGTTTTGTGATTAACCCCTGGCATACTATCAATATAGTTACTCTT
CTATTGAAGTGGTGGTTTTTTTGAAAAGTAGAATTTTTTAGTAATTTTATTTTCTCCTTG
AAACAGAAAAATGAAATAATGTTCTGTTGAGATTCTCTCTAGACCTGTGACTCTTAGTAT
AATAACCCTTTTTGCAGTAATCTATCAAGTATGGTTGATTATTTTAGGACAGTTTAGAGC
TTATCTTATTGGCTGTAGGTTACTCATTTTGCTGCTAAGTATAATTTTTTAGTAGATTTC
AGTATTATAGTGCTGGCCACATGGTTCTATGATTATTTAAAAATCTCATTTTTTCCTTTC
TTTCTGCATGTGAGTATATATGTATACACATGTACATGAATGTGTGTATATATATACATA
TATATGAAACTATGTATATATAGTTTTATGTGATACCACAAAGAAAATTTCATAACCCTT
ATTTCAGATTATAAAAGATTATGGATAAGAACTTGCATTTTGTAAAAGTGGCATTCATCC
ACTTTCAGTTTTTCCTTGTGAATAGAATTAAAGGAAGGATTTCCTCTACTCTCCTCACTT
AACAGTTTTATTTTATATATATAGATAGATAGATACACAAAAAGCAGTGGACTTAAGGCC
TTGATGTTTTTTCTGGCCTTGCATATTCAGGTTTCTAGTCTCTCAGTGCCCTTAATGGAT
GTTATGAATGCATAAATGCATTTTCTTTTAATGAAAAAAGTTAGATTTATAGTGTTATTT
CTTACTTGTATTTCTTTGCACTAAAAAAGCTGTGTGTTTGTTTTATATAACACTTTTGAT
GCCATATTGCCTACAAAGCTGGGTTTACTCCTTAATTTCCAAATTCTAGGAAGTTGATAA
ATAACTTGCATGATCATTTATAAGGGTTAATACACATTTCAAAAAAGAAATCACAAATCT
CTATGACAGTGGGTTTTGTTTTGGGCTTGTTACCTTGCAATATTCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCTATGGGCAAAGAGATGAGGAGAAGGAAGAGTATAACCATTATTACTTTCCCTTAGT
ACTTCTGAACAATTTTTTTTTTTCTTTTTAGGGTTGCACCTGTGGCTTATGGAAGTACCC
------------------------------------------------------------
------------------------------------------------CTCATGGATACT
GCTCGGGTTACCGCTGAGCCAAAATGGGAACTCCCCGAACAATTTTTTAATAATCTAGGT
CCATATTTAAAATTCAGTTTTGTGATTAACCCCTGGCATACTATCAATATAGTTACTCTT
CTATTGAAGTGGTGGTTTTTTTGAAAAGTAGAATTTTTTAGTAATTTTATTTTCTCCTTG
AAACAGAAAAATGAAATAATGTTCTGTTGAGATTCTCTCTAGACCTGTGACTCTTAGTAT
AATAACCCTTTTTGCAGTAATCTATCAAGTATGGTTGATTATTTTAGGACAGTTTAGAGC
TTATCTTATTGGCTGTAGGTTACTCATTTTGCTGCTAAGTATAATTTTTTAGTAGATTTC
AGTATTATAGTGCTGGCCACATGGTTCTATGATTATTTAAAAATCTCATTTTTTCCTTTC
TTTCTGCATGTGAGTATATATGTATACACATGTACATGAATGTGTGTATATATATACATA
TATATGAAACTATGTATATATAGTTTTATGTGATACCACAAAGAAAATTTCATAACCCTT
ATTTCAGATTATAAAAGATTATGGATAAGAACTTGCATTTTGTAAAAGTGGCATTCATCC
ACTTTCAGTTTTTCCTTGTGAATAGAATTAAAGGAAGGATTTCCTCTACTCTCCTCACTT
AACAGTTTTATTTTATATATATAGATAGATAGATACACAAAAAGCAGTGGACTTAAGGCC
TTGATGTTTTTTCTGGCCTTGCATATTCAGGTTTCTAGTCTCTCAGTGCCCTTAATGGAT
GTTATGAATGCATAAATGCATTTTCTTTTAATGAAAAAAGTTAGATTTATAGTGTTATTT
CTTACTTGTATTTCTTTGCACTAAAAAAGCTGTGTGTTTGTTTTATATAACACTTTTGAT
GCCATATTGCCTACAAAGCTGGGTTTACTCCTTAATTTCCAAATTCTAGGAAGTTGATAA
ATAACTTGCATGATCATTTATAAGGGTTAATACACATTTCAAAAAAGAAATCACAAATCT
CTATGACAGTGGGTTTTGTTTTGGGCTTGTTACCTTGCAATATTCTCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               169-1200, gnl|bosTau2|chr1 (57033769-57032721)
               

               
               169-1200, gnl|Hg17|chr3 (180223355-180222357)
               

               
               169-1200, gnl|Mm7|chr3 (32148746-32147835)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               169-1200, gnl|bosTau2|chr1 (57033769-57032721)
               

               
               169-1200, gnl|Hg17|chr3 (180223355-180222357)
               

               
               169-1200, gnl|Mm7|chr3 (32148746-32147835)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               lin (0.291206)
               

               
               liv (0.146284)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               liv (0.146284)

	169-1200, gnl\|bosTau2\|chr1 (57033769-57032721)
	169-1200, gnl\|Hg17\|chr3 (180223355-180222357)
	169-1200, gnl\|Mm7\|chr3 (32148746-32147835)