Non-Coding RNA Search

Ss1.1-Ova1-OVRM10010H11.5

Sequence:


               
               AGTTGGCAGAGCTCTCGCTGGATGGAATCTCCGGTCGGGGAGTGATGGTGGCGGCAGAGA
AGATGGGCCGGGCAGGGACCATGGCGGTGGCAGCAGAGGTGGCAGGGGCGGGGCAGCTGG
CAGTAGAGGAGGCTGTGGTTTTCAGGGGGCTGTAGGTGGAGGCATGGCTCGTGCCAGCGG
CGGGAACGGAAGCGAGGAGGCCTGGGGGGCACTTCGAGTGCCGCAACAGCAGCTTCGAGA
GCTGTGCCCAGGAGTGAACAACCAGCCCTACCTCTGTGAGAGTGGTCACTGCTGCGGGGA
GACCGGCTGCTGCACCTACTACTATGAGCTCTGGTGGTTCTGGCTCCTCTGGACTGTCCT
CATTCTCTTTAGCTGCTGCTGCGCCTTCCGCCATCGACGGGCTAAACTCCGGCTGCAGCA
ACAGCAGCGGCAGCGTGAGATCAACTTGTTGGCCTACCACGGGGCATGCCATGGGGCTGG
TCCTGCCCCTGCTGGCTCACTGCTTGACCTTCGCCTCCTCAGCGCCTTCAAACCCCCAGC
CTATGAGGATGTGGTTCACCGCCCCGGCACACCACCACCTCCTTACACTGCAGCCTCAGG
CTGCCCCTCGACAGCTTCCAGTGAATGCACTTGCTCCTCCTCTGCTTCTAGCTGCCCTGC
CCACCGCGAGGGAACAAATGTGGAAGGTGTTTCCTCCCACCAGAGTACCCCCCTTCATCA
GGAGGGTGAGCCTGGGGCAGGGGTGAGCCCTGCCCCCACACCCCCCTCCTGCCGCTATCG
CCGCCTCACTGGTGACTCAGGTATTGAGCTCTGCCCTTGTCCTGACTCCAGTGAAGGTGA
GCCAGCCGAGGAGGCTAGGGCTGGTGCCACCCCACCAGACGTGGAGGGACAGTCTCCTTG
TGCACCGCCCCTAAATCCCATCCCCCAGGTCTCTCCCCTGGGGCTGGCTTCCAGTGAGGG
GGACATCCCTTAAGCAGCTCTGGGAGGGTGGGTGGGTTGCTTGCCCACCAGAAATAACCC
TGTTCCCAACGCCCTGAGTTTTCCTCGGCCTCTTTCTGCCCTCCTGGAATCTGAAAGGGC
TGGAGTCCTGAGGGGAGGGGCAGTGTTTGGGGGACTGTGCTAGCTCTACCCCCCCAAGAC
ATACACAGAAGCCTTTGATCTCATTAAAGAGATGTGAACCAGCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTGGCAGAGCTCTCGCTGGATGGAATCTCCGGTCGGGGAGTGATGGTGGCGGCAGAGA
AGATGGGCCGGGCAGGGACCATGGCGGTGGCAGCAGAGGTGGCAGGGGCGGGGCAGCTGG
CAGTAGAGGAGGCTGTGGTTTTCAGGGGGCTGTAGGTGGAGGCATGGCTCGTGCCAGCGG
CGGGAACGGAAGCGAGGAGGCCTGGGGGGCACTTCGAGTGCCGCAACAGCAGCTTCGAGA
GCTGTGCCCAGGAGTGAACAACCAGCCCTACCTCTGTGAGAGTGGTCACTGCTGCGGGGA
GACCGGCTGCTGCACCTACTACTATGAGCTCTGGTGGTTCTGGCTCCTCTGGACTGTCCT
CATTCTCTTTAGCTGCTGCTGCGCCTTCCGCCATCGACGGGCTAAACTCCGGCTGCAGCA
ACAGCAGCGGCAGCGTGAGATCAACTTGTTGGCCTACCACGGGGCATGCCATGGGGCTGG
TCCTGCCCCTGCTGGCTCACTGCTTGACCTTCGCCTCCTCAGCGCCTTCAAACCCCCAGC
CTATGAGGATGTGGTTCACCGCCCCGGCACACCACCACCTCCTTACACTGCAGCCTCAGG
CTGCCCCTCGACAGCTTCCAGTGAATGCACTTGCTCCTCCTCTGCTTCTAGCTGCCCTGC
CCACCGCGAGGGAACAAATGTGGAAGGTGTTTCCTCCCACCAGAGTACCCCCCTTCATCA
GGAGGGTGAGCCTGGGGCAGGGGTGAGCCCTGCCCCCACACCCCCCTCCTGCCGCTATCG
CCGCCTCACTGGTGACTCAGGTATTGAGCTCTGCCCTTGTCCTGACTCCAGTGAAGGTGA
GCCAGCCGAGGAGGCTAGGGCTGGTGCCACCCCACCAGACGTGGAGGGACAGTCTCCTTG
TGCACCGCCCCTAAATCCCATCCCCCAGGTCTCTCCCCTGGGGCTGGCTTCCAGTGAGGG
GGACATCCCTTAAGCAGCTCTGGGAGGGTGGGTGGGTTGCTTGCCCACCAGAAATAACCC
TGTTCCCAACGCCCTGAGTTTTCCTCGGCCTCTTTCTGCCCTCCTGGAATCTGAAAGGGC
TGGAGTCCTGAGGGGAGGGGCAGTGTTTGGGGGACTGTGCTAGCTCTACCCCCCCAAGAC
ATACACAGAAGCCTTTGATCTCATTAAAGAGATGTGAACCAGCAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               WBP1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               WBP1_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               115-232, + strand, RNAz p=0.524944
               

               
               513-1028, - strand, RNAz p=0.993091

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-232, + strand, RNAz p=0.524944
               

               
               513-1028, - strand, RNAz p=0.993091

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_012477, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_012477, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-232, gnl|bosTau2|chr11 (7820644-7820413)
               

               
               1-232, gnl|canFam2|chr17 (51742674-51742439)
               

               
               1-232, gnl|echTel1|scaffold_310074 (651-885)
               

               
               1-232, gnl|hg17|chr2 (74597215-74597450)
               

               
               1-232, gnl|Hg17|chr2 (74597222-74597453)
               

               
               1-232, gnl|loxAfr1|scaffold_143383 (5202-4966)
               

               
               1-232, gnl|mm7|chr6 (83146875-83146642)
               

               
               1-232, gnl|Mm7|chr6 (83146868-83146637)
               

               
               1-232, gnl|monDom2|scaffold_10 (48205812-48205575)
               

               
               1-232, gnl|oryCun1|scaffold_175613 (57075-57295)
               

               
               1-232, gnl|panTro1|chr12 (77000234-77000469)
               

               
               1-232, gnl|rheMac2|chr13 (74688717-74688952)
               

               
               1-232, gnl|rn3|chr4 (117578052-117577819)
               


               
               513-1183, gnl|bosTau2|chr11 (7818890-7818225)
               

               
               513-1183, gnl|Hg17|chr2 (74599003-74599665)
               

               
               513-1183, gnl|Mm7|chr6 (83145154-83144479)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-232, gnl|bosTau2|chr11 (7820644-7820413)
               

               
               1-232, gnl|canFam2|chr17 (51742674-51742439)
               

               
               1-232, gnl|echTel1|scaffold_310074 (651-885)
               

               
               1-232, gnl|hg17|chr2 (74597215-74597450)
               

               
               1-232, gnl|Hg17|chr2 (74597222-74597453)
               

               
               1-232, gnl|loxAfr1|scaffold_143383 (5202-4966)
               

               
               1-232, gnl|mm7|chr6 (83146875-83146642)
               

               
               1-232, gnl|Mm7|chr6 (83146868-83146637)
               

               
               1-232, gnl|monDom2|scaffold_10 (48205812-48205575)
               

               
               1-232, gnl|oryCun1|scaffold_175613 (57075-57295)
               

               
               1-232, gnl|panTro1|chr12 (77000234-77000469)
               

               
               1-232, gnl|rheMac2|chr13 (74688717-74688952)
               

               
               1-232, gnl|rn3|chr4 (117578052-117577819)
               


               
               513-1183, gnl|bosTau2|chr11 (7818890-7818225)
               

               
               513-1183, gnl|Hg17|chr2 (74599003-74599665)
               

               
               513-1183, gnl|Mm7|chr6 (83145154-83144479)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               elu (0.385356)
               

               
               nco (0.323468)
               

               
               fcc (0.197785)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               nco (0.323468)
               

               
               fcc (0.197785)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	115-232, + strand, RNAz p=0.524944
	513-1028, - strand, RNAz p=0.993091

	1-232, gnl\|bosTau2\|chr11 (7820644-7820413)
	1-232, gnl\|canFam2\|chr17 (51742674-51742439)
	1-232, gnl\|echTel1\|scaffold_310074 (651-885)
	1-232, gnl\|hg17\|chr2 (74597215-74597450)
	1-232, gnl\|Hg17\|chr2 (74597222-74597453)
	1-232, gnl\|loxAfr1\|scaffold_143383 (5202-4966)
	1-232, gnl\|mm7\|chr6 (83146875-83146642)
	1-232, gnl\|Mm7\|chr6 (83146868-83146637)
	1-232, gnl\|monDom2\|scaffold_10 (48205812-48205575)
	1-232, gnl\|oryCun1\|scaffold_175613 (57075-57295)
	1-232, gnl\|panTro1\|chr12 (77000234-77000469)
	1-232, gnl\|rheMac2\|chr13 (74688717-74688952)
	1-232, gnl\|rn3\|chr4 (117578052-117577819)

	513-1183, gnl\|bosTau2\|chr11 (7818890-7818225)
	513-1183, gnl\|Hg17\|chr2 (74599003-74599665)
	513-1183, gnl\|Mm7\|chr6 (83145154-83144479)

	elu (0.385356)
	nco (0.323468)
	fcc (0.197785)
	csp (0.161186)
	pty (0.142714)
	nca (0.136874)
	eep (0.122564)
	cly (0.120642)
	ebs (0.118301)
	med (0.116252)