Ss1.1-Ova1-OVRM10011G03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTTTGTACCTTTCTCGCCGCGACTGCGAAGCGGGCCGGGACAGGCCGGGCCAGACTAAA CCAGACCCCGGGGGCGATGCGGCTGCAGCCCCTGCTGCGGACTGTCCTCTGGGCCGCGCT CCTCAGCTCCCCTCTGAGAGGGAGCTCTGGTCTCCGCCACGAGGTCTATTGGAACTCCAG TAACCCCAGGCTGCTTCGAGGAGACGCCGTGGTGGAGCTGGGCCTCAAGGATTACCTAGA CATCTTCTGCCCACACTATGAGAGCCCAGGGCCCCCTGAGGGCCCGGAGACCTTTGCCTT ATACATGGTGGACTGGTCGGGCTATGAGGCCTGCCAGGCGGAGGGGCCAGGTGCCTTCAA GCGCTGGGAGTGCTCCCGCCCCTTTGCTCCCTTTGGCCCTGTGCGATTCTCAGAGAAGAT TCAGCGCTTCACACCCTTCTCCCTGGGCTTCGAGTTCTTGCCTGGAGAGACCTACTACTA CATCTCAGTGCCAACTCCGGAGAGTCCTGGCCAGTGCTTGAGGCTCCAGGTGTCTGTCTG CTGCAAGGAGGACAAGCCTGAGTCGGCCCATCCTGTTGGGAGCCCTGGAGAGAGTGGCAC GTCAGGGTGGCAAGGGGGGGCCACTCCCAGCCCCCTCTGTCTCTTGCTCCTGCTGCTGCT CCCAATTCTGCGTCTCCTAAGAGTTCTCTGAGCCAAGCGGACCCTGCCACCCCCAGGACC CAGAACCCTTCCAAGACTCCCTGGAGGAGAGCCCCTGCCACCTACCTGAGCTGGGAGTGC CAAGCAGGACAGACAAAATGGAAGAGGTCAGAGGGTCTGAGGTGACCTTCTTCCAGGTGT TGGCCTCCTCATCTTAGGCCAAAGAGGAGCTGCAGGGGAGCAGCAGACAGCCCTGGGCAC CCTGGAGCAGAGGCGAGACAAACATAAGGTCTCTGTCAACTGCTTTGATGTTCTCATCCC ATCCCCCCAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTTTGTACCTTTCTCGCCGCGACTGCGAAGCGGGCCGGGACAGGCCGGGCCAGACTAAA CCAGACCCCGGGGGCGATGCGGCTGCAGCCCCTGCTGCGGACTGTCCTCTGGGCCGCGCT CCTCAGCTCCCCTCTGAGAGGGAGCTCTGGTCTCCGCCACGAGGTCTATTGGAACTCCAG TAACCCCAGGCTGCTTCGAGGAGACGCCGTGGTGGAGCTGGGCCTCAAGGATTACCTAGA CATCTTCTGCCCACACTATGAGAGCCCAGGGCCCCCTGAGGGCCCGGAGACCTTTGCCTT ATACATGGTGGACTGGTCGGGCTATGAGGCCTGCCAGGCGGAGGGGCCAGGTGCCTTCAA GCGCTGGGAGTGCTCCCGCCCCTTTGCTCCCTTTGGCCCTGTGCGATTCTCAGAGAAGAT TCAGCGCTTCACACCCTTCTCCCTGGGCTTCGAGTTCTTGCCTGGAGAGACCTACTACTA CATCTCAGTGCCAACTCCGGAGAGTCCTGGCCAGTGCTTGAGGCTCCAGGTGTCTGTCTG CTGCAAGGAGGACAAGCCTGAGTCGGCCCATCCTGTTGGGAGCCCTGGAGAGAGTGGCAC GTCAGGGTGGCAAGGGGGGGCCACTCCCAGCCCCCTCTGTCTCTTGCTCCTGCTGCTGCT CCCAATTCTGCGTCTCCTAAGAGTTCTCTGAGCCAAGCGGACCCTGCCACCCCCAGGACC CAGAACCCTTCCAAGACTCCCTGGAGGAGAGCCCCTGCCACCTACCTGAGCTGGGAGTGC CAAGCAGGACAGACAAAATGGAAGAGGTCAGAGGGTCTGAGGTGACCTTCTTCCAGGTGT TGGCCTCCTCATCTTAGGCCAAAGAGGAGCTGCAGGGGAGCAGCAGACAGCCCTGGGCAC CCTGGAGCAGAGGCGAGACAAACATAAGGTCTCTGTCAACTGCTTTGATGTTCTCATCCC ATCCCCCCAGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 226-345, + strand, RNAz p=0.517711 | |
| 791-898, - strand, RNAz p=0.550158 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 226-345, + strand, RNAz p=0.517711 | |
| 791-898, - strand, RNAz p=0.550158 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 187-485, gnl|bosTau2|chr3 (9155055-9155353) | |
| 187-485, gnl|canFam2|chr7 (45402495-45402124) | |
| 187-485, gnl|danRer3|chr19 (3183520-3183834) | |
| 187-485, gnl|dasNov1|scaffold_216383 (3984-3652) | |
| 187-485, gnl|echTel1|scaffold_303127 (2748-3070) | |
| 187-485, gnl|fr1|chrUn (105198379-105198031) | |
| 187-485, gnl|hg17|chr1 (151852239-151852575) | |
| 187-485, gnl|Hg17|chr1 (151852276-151852565) | |
| 187-485, gnl|loxAfr1|scaffold_88266 (3178-2830) | |
| 187-485, gnl|mm7|chr3 (89462168-89461837) | |
| 187-485, gnl|Mm7|chr3 (89462139-89461841) | |
| 187-485, gnl|monDom2|scaffold_59 (2728626-2728273) | |
| 187-485, gnl|oryCun1|scaffold_183156 (2595-2929) | |
| 187-485, gnl|panTro1|chr1 (133841668-133842004) | |
| 187-485, gnl|rheMac2|chr1 (133611739-133612075) | |
| 187-485, gnl|rn3|chr2 (181473121-181472786) | |
| 187-485, gnl|tetNig1|chr10 (10320515-10320858) | |
| 187-485, gnl|xenTro1|scaffold_1017 (309934-309593) | |
| 557-970, gnl|bosTau2|chr3 (9156189-9156597) | |
| 557-970, gnl|Hg17|chr1 (151854404-151854818) | |
| 557-970, gnl|Mm7|chr3 (89461088-89460678) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 187-485, gnl|bosTau2|chr3 (9155055-9155353) | |
| 187-485, gnl|canFam2|chr7 (45402495-45402124) | |
| 187-485, gnl|danRer3|chr19 (3183520-3183834) | |
| 187-485, gnl|dasNov1|scaffold_216383 (3984-3652) | |
| 187-485, gnl|echTel1|scaffold_303127 (2748-3070) | |
| 187-485, gnl|fr1|chrUn (105198379-105198031) | |
| 187-485, gnl|hg17|chr1 (151852239-151852575) | |
| 187-485, gnl|Hg17|chr1 (151852276-151852565) | |
| 187-485, gnl|loxAfr1|scaffold_88266 (3178-2830) | |
| 187-485, gnl|mm7|chr3 (89462168-89461837) | |
| 187-485, gnl|Mm7|chr3 (89462139-89461841) | |
| 187-485, gnl|monDom2|scaffold_59 (2728626-2728273) | |
| 187-485, gnl|oryCun1|scaffold_183156 (2595-2929) | |
| 187-485, gnl|panTro1|chr1 (133841668-133842004) | |
| 187-485, gnl|rheMac2|chr1 (133611739-133612075) | |
| 187-485, gnl|rn3|chr2 (181473121-181472786) | |
| 187-485, gnl|tetNig1|chr10 (10320515-10320858) | |
| 187-485, gnl|xenTro1|scaffold_1017 (309934-309593) | |
| 557-970, gnl|bosTau2|chr3 (9156189-9156597) | |
| 557-970, gnl|Hg17|chr1 (151854404-151854818) | |
| 557-970, gnl|Mm7|chr3 (89461088-89460678) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| jej (0.197844) | |
| eep (0.122564) | |
| eru (0.120048) | |
| eje (0.0988338) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.197844) | |
| eep (0.122564) | |
| eru (0.120048) | |
| eje (0.0988338) |