Non-Coding RNA Search

Ss1.1-Ova1-OVRM10011G11.5

Sequence:


               
               AACTGGGCCGGTAGTGGCGATGTCCGGCCGGTCCAAACGGGAGTCTCGTGGTTCGACCCG
CGGGAAGCGCGAGTCCGAGTCGCGGAGCAGCTCGGCTCGCGTCAAGCGGGAGCGAGATCG
GGAGCGGGAAACCGAGGCGCCGAGCTCCCGGAGCAGCCCGGTGCGCGTGAAGCGGGAGGT
TGAGCCGGCGAGCGCGCGCGAGGCCCCGGCTCCAGTAATCCCAGCCGTGAGAGTGAAGCG
GGAGCGCGATGTCGACGAGGACTCGGAGCCTGAGCGGGAGGTGCGAGCAAAGAATGGCCG
CTTGGATTCTGAGGACCAGAGGAGCCGCCACTGCCCATACCTGGATACCATTAACAGGAG
TGTGCTGGACTTTGACTTTGAAAAACTGTGTTCCATCTCTCTGTCACATATCAATGCCTA
TGCCTGTCTGGTGTGTGGCAAGTACTTTCAAGGTCGGGGTTTGAAGTCTCACGCCTACAT
TCACAGCGTCCAGTTTAGTCACCATGTCTTCCTCAACCTCCACACCCTCAAGTTTTACTG
CCTCCCGGACAACTATGAGATCATTGATTCCTCGCTGGAGGATATCACGTATGTGTTGAA
GCCCACTTTCACAAAGCAGCAAATTGCTAACTTGGAGAAGCAAGTCAAGTTTTCCCGGGC
ATATGATGGCACCACTTACCTGCCAGGTATCGTGGGCCTGAATAACATAAAGGCCAACGA
CTATGCCAACGCTGTCCTTCAGGCTCTGTCTAATGTTCCTCCTCTCCGGAACTACTTCCT
GGAAGAAGACAATTATAAGAACATCAAGCGTCCTCCTGGGGATATCATGTTCTTGTTGGT
CCAGCGTTTGGGAGAGCTGATGAGAAAACTCTGGAACCCTCGAAATTTCAAGGCACATGT
CTCTCCCCATGAGATGCTTCAGGCTGTTGTCCTTTGCAGCAAGAAGACTTTTCAGATCAC
CAAGCAGGGGGATGGAGTTGACTTTCTGTCCTGGTTTTTGAATGCTTTACACTCAGCGCT
GGGGGGCACAAAGAAGAAGAAGAAGACTATAGTGACTGACGTCTTCCAGGGATCCATGAG
GATCTTCACTAAAAAGCTTCCTCATCCCGACTTGCCAGCAGAAGAAAAAGAGCAGCTGCT
TCACAATGATGAGTACCAGGAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTGGGCCGGTAGTGGCGATGTCCGGCCGGTCCAAACGGGAGTCTCGTGGTTCGACCCG
CGGGAAGCGCGAGTCCGAGTCGCGGAGCAGCTCGGCTCGCGTCAAGCGGGAGCGAGATCG
GGAGCGGGAAACCGAGGCGCCGAGCTCCCGGAGCAGCCCGGTGCGCGTGAAGCGGGAGGT
TGAGCCGGCGAGCGCGCGCGAGGCCCCGGCTCCAGTAATCCCAGCCGTGAGAGTGAAGCG
GGAGCGCGATGTCGACGAGGACTCGGAGCCTGAGCGGGAGGTGCGAGCAAAGAATGGCCG
CTTGGATTCTGAGGACCAGAGGAGCCGCCACTGCCCATACCTGGATACCATTAACAGGAG
TGTGCTGGACTTTGACTTTGAAAAACTGTGTTCCATCTCTCTGTCACATATCAATGCCTA
TGCCTGTCTGGTGTGTGGCAAGTACTTTCAAGGTCGGGGTTTGAAGTCTCACGCCTACAT
TCACAGCGTCCAGTTTAGTCACCATGTCTTCCTCAACCTCCACACCCTCAAGTTTTACTG
CCTCCCGGACAACTATGAGATCATTGATTCCTCGCTGGAGGATATCACGTATGTGTTGAA
GCCCACTTTCACAAAGCAGCAAATTGCTAACTTGGAGAAGCAAGTCAAGTTTTCCCGGGC
ATATGATGGCACCACTTACCTGCCAGGTATCGTGGGCCTGAATAACATAAAGGCCAACGA
CTATGCCAACGCTGTCCTTCAGGCTCTGTCTAATGTTCCTCCTCTCCGGAACTACTTCCT
GGAAGAAGACAATTATAAGAACATCAAGCGTCCTCCTGGGGATATCATGTTCTTGTTGGT
CCAGCGTTTGGGAGAGCTGATGAGAAAACTCTGGAACCCTCGAAATTTCAAGGCACATGT
CTCTCCCCATGAGATGCTTCAGGCTGTTGTCCTTTGCAGCAAGAAGACTTTTCAGATCAC
CAAGCAGGGGGATGGAGTTGACTTTCTGTCCTGGTTTTTGAATGCTTTACACTCAGCGCT
GGGGGGCACAAAGAAGAAGAAGAAGACTATAGTGACTGACGTCTTCCAGGGATCCATGAG
GATCTTCACTAAAAAGCTTCCTCATCCCGACTTGCCAGCAGAAGAAAAAGAGCAGCTGCT
TCACAATGATGAGTACCAGGAGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61822205|ref|XP_615767.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61822205|ref|XP_615767.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               740-858, + strand, RNAz p=0.995115

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               740-858, + strand, RNAz p=0.995115

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC067273, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC067273, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               740-1030, gnl|bosTau2|chr11 (34464657-34464367)
               

               
               740-1030, gnl|canFam2|chr17 (42520648-42520401)
               

               
               740-1030, gnl|danRer3|chr15 (19012673-19012919)
               

               
               740-1030, gnl|echTel1|scaffold_175640 (12916-13162)
               

               
               740-1030, gnl|fr1|chrUn (72602260-72602504)
               

               
               740-1030, gnl|hg17|chr2 (85769495-85769741)
               

               
               740-1030, gnl|Hg17|chr2 (85769499-85769780)
               

               
               740-1030, gnl|loxAfr1|scaffold_40596 (6534-6783)
               

               
               740-1030, gnl|mm7|chr6 (72354425-72354178)
               

               
               740-1030, gnl|Mm7|chr6 (72354419-72354130)
               

               
               740-1030, gnl|monDom2|scaffold_68 (9547312-9547550)
               

               
               740-1030, gnl|oryCun1|scaffold_200195 (50846-50601)
               

               
               740-1030, gnl|panTro1|chr12 (88644491-88644737)
               

               
               740-1030, gnl|rheMac2|chr13 (86203292-86203538)
               

               
               740-1030, gnl|rn3|chr4 (105885628-105885381)
               

               
               740-1030, gnl|tetNig1|chr12 (6862731-6862495)
               

               
               740-1030, gnl|xenTro1|scaffold_217 (664754-664991)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               740-1030, gnl|bosTau2|chr11 (34464657-34464367)
               

               
               740-1030, gnl|canFam2|chr17 (42520648-42520401)
               

               
               740-1030, gnl|danRer3|chr15 (19012673-19012919)
               

               
               740-1030, gnl|echTel1|scaffold_175640 (12916-13162)
               

               
               740-1030, gnl|fr1|chrUn (72602260-72602504)
               

               
               740-1030, gnl|hg17|chr2 (85769495-85769741)
               

               
               740-1030, gnl|Hg17|chr2 (85769499-85769780)
               

               
               740-1030, gnl|loxAfr1|scaffold_40596 (6534-6783)
               

               
               740-1030, gnl|mm7|chr6 (72354425-72354178)
               

               
               740-1030, gnl|Mm7|chr6 (72354419-72354130)
               

               
               740-1030, gnl|monDom2|scaffold_68 (9547312-9547550)
               

               
               740-1030, gnl|oryCun1|scaffold_200195 (50846-50601)
               

               
               740-1030, gnl|panTro1|chr12 (88644491-88644737)
               

               
               740-1030, gnl|rheMac2|chr13 (86203292-86203538)
               

               
               740-1030, gnl|rn3|chr4 (105885628-105885381)
               

               
               740-1030, gnl|tetNig1|chr12 (6862731-6862495)
               

               
               740-1030, gnl|xenTro1|scaffold_217 (664754-664991)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cga (0.279096)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	740-1030, gnl\|bosTau2\|chr11 (34464657-34464367)
	740-1030, gnl\|canFam2\|chr17 (42520648-42520401)
	740-1030, gnl\|danRer3\|chr15 (19012673-19012919)
	740-1030, gnl\|echTel1\|scaffold_175640 (12916-13162)
	740-1030, gnl\|fr1\|chrUn (72602260-72602504)
	740-1030, gnl\|hg17\|chr2 (85769495-85769741)
	740-1030, gnl\|Hg17\|chr2 (85769499-85769780)
	740-1030, gnl\|loxAfr1\|scaffold_40596 (6534-6783)
	740-1030, gnl\|mm7\|chr6 (72354425-72354178)
	740-1030, gnl\|Mm7\|chr6 (72354419-72354130)
	740-1030, gnl\|monDom2\|scaffold_68 (9547312-9547550)
	740-1030, gnl\|oryCun1\|scaffold_200195 (50846-50601)
	740-1030, gnl\|panTro1\|chr12 (88644491-88644737)
	740-1030, gnl\|rheMac2\|chr13 (86203292-86203538)
	740-1030, gnl\|rn3\|chr4 (105885628-105885381)
	740-1030, gnl\|tetNig1\|chr12 (6862731-6862495)
	740-1030, gnl\|xenTro1\|scaffold_217 (664754-664991)

	cga (0.279096)
	nco (0.161734)
	eli (0.151814)
	med (0.116252)
	cty (0.10408)
	jej (0.0989218)