Non-Coding RNA Search

Ss1.1-Ova1-OVRM10012B12.5

Sequence:


               
               CCAAAAAAGATCGGCAGCGGGTGGACACGGCGTGCAGGGTAAAGAGAGGCGTGGGGTCCG
CGGGCGGAGCAGACAAAAATAACTTTGTAGAAGAGGACATGTGACTGCATGCTGTCTAAT
TGTTGAAGCATTGGGATCGCCAGTCTCTAAAGTTTCAGGAAAATCAATCAGCAATTTATA
CTTTGTCAAGGTGAACCACTCAGTTCTTCATTATGTCTGATGGAGACTATGATTACCTCA
TCAAGTTTTTAGCTTTGGGAGACTCTGGAGTAGGGAAGACCAGTGTACTTTACCAGTACA
CAGATGGTAAATTTAACTCCAAATTTATCACGACAGTTGGCATTGATTTCAGGGAAAAGA
GAGTGGTGTACAGAGCCAACGGGCCAGATGGGGCCATTGGCAGAGGCCAGAGAATCCACC
TGCAGTTATGGGACACAGCAGGTCAGGAGAGGTTTCGCAGCTTGACAACCGCATTCTTCA
GAGATGCTATGGGGTTTCTTCTGCTTTTTGATCTGACCAATGAGCAAAGCTTCCTCAATG
TCAGAAACTGGATAAGCCAGCTACAAATGCATGCATATTGTGAAAACCCAGACATAGTGT
TATGTGGAAATAAGAGTGATCTGGAAGACCAGAGAGTAGTAAAAGAGGAAGAAGCCAGAG
GACTTGCAGAGAAATATGGGTGAGTATTTTGGTGGAGGAGTCTACAGAACATGTTTCCAG
TATAATCATTGGCACAGGAGTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAAAAAGATCGGCAGCGGGTGGACACGGCGTGCAGGGTAAAGAGAGGCGTGGGGTCCG
CGGGCGGAGCAGACAAAAATAACTTTGTAGAAGAGGACATGTGACTGCATGCTGTCTAAT
TGTTGAAGCATTGGGATCGCCAGTCTCTAAAGTTTCAGGAAAATCAATCAGCAATTTATA
CTTTGTCAAGGTGAACCACTCAGTTCTTCATTATGTCTGATGGAGACTATGATTACCTCA
TCAAGTTTTTAGCTTTGGGAGACTCTGGAGTAGGGAAGACCAGTGTACTTTACCAGTACA
CAGATGGTAAATTTAACTCCAAATTTATCACGACAGTTGGCATTGATTTCAGGGAAAAGA
GAGTGGTGTACAGAGCCAACGGGCCAGATGGGGCCATTGGCAGAGGCCAGAGAATCCACC
TGCAGTTATGGGACACAGCAGGTCAGGAGAGGTTTCGCAGCTTGACAACCGCATTCTTCA
GAGATGCTATGGGGTTTCTTCTGCTTTTTGATCTGACCAATGAGCAAAGCTTCCTCAATG
TCAGAAACTGGATAAGCCAGCTACAAATGCATGCATATTGTGAAAACCCAGACATAGTGT
TATGTGGAAATAAGAGTGATCTGGAAGACCAGAGAGTAGTAAAAGAGGAAGAAGCCAGAG
GACTTGCAGAGAAATATGGGTGAGTATTTTGGTGGAGGAGTCTACAGAACATGTTTCCAG
TATAATCATTGGCACAGGAGTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61883313|ref|XP_612775.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61883313|ref|XP_612775.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               189-307, + strand, RNAz p=0.968587

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               189-307, + strand, RNAz p=0.968587

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               189-679, gnl|bosTau2|chr18 (28548707-28548217)
               

               
               189-679, gnl|Hg17|chr15 (53314448-53303382)
               

               
               189-679, gnl|Mm7|chr9 (73107890-73127756)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               189-679, gnl|bosTau2|chr18 (28548707-28548217)
               

               
               189-679, gnl|Hg17|chr15 (53314448-53303382)
               

               
               189-679, gnl|Mm7|chr9 (73107890-73127756)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               duo (0.172801)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               clu (0.119646)

	189-679, gnl\|bosTau2\|chr18 (28548707-28548217)
	189-679, gnl\|Hg17\|chr15 (53314448-53303382)
	189-679, gnl\|Mm7\|chr9 (73107890-73127756)