Ss1.1-Ova1-OVRM10014B08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGTGTTCACCGCTTGGGTTGCCGCCGGCGCCGTCGCCAAGGAAGCCGCTTCAGCCCGG TTGGGAGTGGAGGCGGCGCGGCATGAAGCGGCGCAGGCCCGCTCCGTAGCGCGCGTCGGG ACGGTCCGGGCGGGGCCGGGGGGGAAGGATTGGATGGTGAGAAAAAGAAAGACTCCTCTG AGAAGAGAACAGGATGAGCAGAGGGATCTGTGCTTGAAGTTGAGTCACTTGAGAAAGATC TCTTTGAATGTGGAAGAGATCTGAGCAGATGAAAATACAATCAGGAAAATGCACCATGGC AGCAGCAATGGAAACAGAACAGCTGGGTGTTGAGATCTTTGAAACTGCAGAGTGTGAGGA GAATATTGAATCACAGGATCGGCCTAAATTGGAGCCATTTTATGTTGAGCGATATTCTTG GAGTCAGCTTAAAAAGCTGCTTGCTGATACCAGAAAATATCATGGATACATGATGGCTAA GGCACCACATGATTTTATGTTTGTGAAGAGAAACGATCCAGATGGGCCTCATTCAGACAG GATCTATTACCTTGCTATGTCTGGTGAGAACAGAGAAAATACACTGTTTTATTCTGAAAT TCCCAAAACTGTCAACAGAGCAGCAGTCTTAATGCTCTCTTGGAAGCCTCTTTTGGATCT TTTTCAGAGCTAGCCAGCATGGAAGAGGATCCCAGATCAGCTGGAGTTGCTACCTTTGTT CTTCAAGAAGAATTTGATAGATATTCTGGCTATTGGTGGTGTCCGGAAGCTGAAACAACT CCCAGTGGCAGTAAAATTCTTAGAATTCTGTATGAAGAAAACGATGAATCCGAGGTGGAA ATTATTCATGTTACATCCCCTTTGTTGGAAACAAGGAGGGCAGATTCATTCCGTTATCCT AAAACAGGTACAGCAAATCCAAAAGTCACTTTTAAGATGTCAGAAATACTGATTGATGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGTGTTCACCGCTTGGGTTGCCGCCGGCGCCGTCGCCAAGGAAGCCGCTTCAGCCCGG TTGGGAGTGGAGGCGGCGCGGCATGAAGCGGCGCAGGCCCGCTCCGTAGCGCGCGTCGGG ACGGTCCGGGCGGGGCCGGGGGGGAAGGATTGGATGGTGAGAAAAAGAAAGACTCCTCTG AGAAGAGAACAGGATGAGCAGAGGGATCTGTGCTTGAAGTTGAGTCACTTGAGAAAGATC TCTTTGAATGTGGAAGAGATCTGAGCAGATGAAAATACAATCAGGAAAATGCACCATGGC AGCAGCAATGGAAACAGAACAGCTGGGTGTTGAGATCTTTGAAACTGCAGAGTGTGAGGA GAATATTGAATCACAGGATCGGCCTAAATTGGAGCCATTTTATGTTGAGCGATATTCTTG GAGTCAGCTTAAAAAGCTGCTTGCTGATACCAGAAAATATCATGGATACATGATGGCTAA GGCACCACATGATTTTATGTTTGTGAAGAGAAACGATCCAGATGGGCCTCATTCAGACAG GATCTATTACCTTGCTATGTCTGGTGAGAACAGAGAAAATACACTGTTTTATTCTGAAAT TCCCAAAACTGTCAACAGAGCAGCAGTCTTAATGCTCTCTTGGAAGCCTCTTTTGGATCT TTTTCAGAGCTAGCCAGCATGGAAGAGGATCCCAGATCAGCTGGAGTTGCTACCTTTGTT CTTCAAGAAGAATTTGATAGATATTCTGGCTATTGGTGGTGTCCGGAAGCTGAAACAACT CCCAGTGGCAGTAAAATTCTTAGAATTCTGTATGAAGAAAACGATGAATCCGAGGTGGAA ATTATTCATGTTACATCCCCTTTGTTGGAAACAAGGAGGGCAGATTCATTCCGTTATCCT AAAACAGGTACAGCAAATCCAAAAGTCACTTTTAAGATGTCAGAAATACTGATTGATGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 361-518, + strand, RNAz p=0.892146 | |
| 781-914, + strand, RNAz p=0.95373 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 361-518, + strand, RNAz p=0.892146 | |
| 781-914, + strand, RNAz p=0.95373 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC030688, + |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 1-149, gnl|bosTau2|chr10 (8868678-8868530) | |
| 1-149, gnl|canFam2|chr30 (32863882-32864258) | |
| 1-149, gnl|dasNov1|scaffold_120366 (990-1371) | |
| 1-149, gnl|hg17|chr15 (63596690-63597085) | |
| 1-149, gnl|Hg17|chr15 (63597022-63596879) | |
| 1-149, gnl|loxAfr1|scaffold_30040 (9415-9801) | |
| 1-149, gnl|mm7|chr9 (65062374-65062069) | |
| 1-149, gnl|Mm7|chr9 (65062121-65062262) | |
| 1-149, gnl|monDom2|scaffold_12 (47638440-47638034) | |
| 1-149, gnl|oryCun1|scaffold_128967 (3695-4050) | |
| 1-149, gnl|panTro1|chr16_random (17783199-17783595) | |
| 1-149, gnl|rheMac2|chr7 (44008034-44008421) | |
| 1-149, gnl|rn3|chr8 (69296107-69295803) | |
| 1-149, gnl|xenTro1|scaffold_1807 (6498-6050) | |
| 283-563, gnl|bosTau2|chr10 (8864483-8864203) | |
| 283-563, gnl|Hg17|chr15 (63591957-63591677) | |
| 283-563, gnl|Mm7|chr9 (65066608-65066891) | |
| 660-778, gnl|bosTau2|chr10 (8845738-8845620) | |
| 660-778, gnl|canFam2|chr30 (32829577-32829727) | |
| 660-778, gnl|danRer3|chr14 (44883852-44883989) | |
| 660-778, gnl|dasNov1|scaffold_27509 (43147-43297) | |
| 660-778, gnl|echTel1|scaffold_317736 (30363-30212) | |
| 660-778, gnl|fr1|chrUn (197021407-197021519) | |
| 660-778, gnl|galGal2|chr10 (18722577-18722721) | |
| 660-778, gnl|hg17|chr15 (63569576-63569726) | |
| 660-778, gnl|Hg17|chr15 (63569698-63569580) | |
| 660-778, gnl|loxAfr1|scaffold_33912 (12658-12539) | |
| 660-778, gnl|mm7|chr9 (65081147-65080997) | |
| 660-778, gnl|Mm7|chr9 (65081023-65081141) | |
| 660-778, gnl|monDom2|scaffold_12 (47661861-47661711) | |
| 660-778, gnl|oryCun1|scaffold_177693 (58313-58463) | |
| 660-778, gnl|panTro1|chr16 (64057270-64057423) | |
| 660-778, gnl|rheMac2|chr7 (43980017-43980167) | |
| 660-778, gnl|rn3|chr8 (69315704-69315557) | |
| 660-778, gnl|tetNig1|chr15 (3914411-3914552) | |
| 660-778, gnl|xenTro1|scaffold_208 (165857-165720) | |
| 781-914, gnl|bosTau2|chr10 (8844610-8844477) | |
| 781-914, gnl|canFam2|chr20 (58000659-58000550) | |
| 781-914, gnl|danRer3|chr14 (44883474-44883579) | |
| 781-914, gnl|dasNov1|scaffold_74446 (8880-8983) | |
| 781-914, gnl|echTel1|scaffold_317736 (32347-32244) | |
| 781-914, gnl|fr1|chrUn (197021154-197021263) | |
| 781-914, gnl|galGal2|chr28 (4198003-4197893) | |
| 781-914, gnl|Hg17|chr15 (63567207-63567074) | |
| 781-914, gnl|hg17|chr19 (4653029-4653141) | |
| 781-914, gnl|loxAfr1|scaffold_33912 (17637-17528) | |
| 781-914, gnl|mm7|chr17 (54362411-54362523) | |
| 781-914, gnl|Mm7|chr9 (65082688-65082821) | |
| 781-914, gnl|monDom2|scaffold_85 (1779098-1779204) | |
| 781-914, gnl|oryCun1|scaffold_177693 (56973-57076) | |
| 781-914, gnl|panTro1|chr20 (4932119-4932231) | |
| 781-914, gnl|rheMac2|chr19 (4589266-4589378) | |
| 781-914, gnl|rn3|chrUn (25593831-25593719) | |
| 781-914, gnl|tetNig1|chr15 (3914171-3914280) | |
| 781-914, gnl|xenTro1|scaffold_1169 (72126-72007) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-149, gnl|bosTau2|chr10 (8868678-8868530) | |
| 1-149, gnl|canFam2|chr30 (32863882-32864258) | |
| 1-149, gnl|dasNov1|scaffold_120366 (990-1371) | |
| 1-149, gnl|hg17|chr15 (63596690-63597085) | |
| 1-149, gnl|Hg17|chr15 (63597022-63596879) | |
| 1-149, gnl|loxAfr1|scaffold_30040 (9415-9801) | |
| 1-149, gnl|mm7|chr9 (65062374-65062069) | |
| 1-149, gnl|Mm7|chr9 (65062121-65062262) | |
| 1-149, gnl|monDom2|scaffold_12 (47638440-47638034) | |
| 1-149, gnl|oryCun1|scaffold_128967 (3695-4050) | |
| 1-149, gnl|panTro1|chr16_random (17783199-17783595) | |
| 1-149, gnl|rheMac2|chr7 (44008034-44008421) | |
| 1-149, gnl|rn3|chr8 (69296107-69295803) | |
| 1-149, gnl|xenTro1|scaffold_1807 (6498-6050) | |
| 283-563, gnl|bosTau2|chr10 (8864483-8864203) | |
| 283-563, gnl|Hg17|chr15 (63591957-63591677) | |
| 283-563, gnl|Mm7|chr9 (65066608-65066891) | |
| 660-778, gnl|bosTau2|chr10 (8845738-8845620) | |
| 660-778, gnl|canFam2|chr30 (32829577-32829727) | |
| 660-778, gnl|danRer3|chr14 (44883852-44883989) | |
| 660-778, gnl|dasNov1|scaffold_27509 (43147-43297) | |
| 660-778, gnl|echTel1|scaffold_317736 (30363-30212) | |
| 660-778, gnl|fr1|chrUn (197021407-197021519) | |
| 660-778, gnl|galGal2|chr10 (18722577-18722721) | |
| 660-778, gnl|hg17|chr15 (63569576-63569726) | |
| 660-778, gnl|Hg17|chr15 (63569698-63569580) | |
| 660-778, gnl|loxAfr1|scaffold_33912 (12658-12539) | |
| 660-778, gnl|mm7|chr9 (65081147-65080997) | |
| 660-778, gnl|Mm7|chr9 (65081023-65081141) | |
| 660-778, gnl|monDom2|scaffold_12 (47661861-47661711) | |
| 660-778, gnl|oryCun1|scaffold_177693 (58313-58463) | |
| 660-778, gnl|panTro1|chr16 (64057270-64057423) | |
| 660-778, gnl|rheMac2|chr7 (43980017-43980167) | |
| 660-778, gnl|rn3|chr8 (69315704-69315557) | |
| 660-778, gnl|tetNig1|chr15 (3914411-3914552) | |
| 660-778, gnl|xenTro1|scaffold_208 (165857-165720) | |
| 781-914, gnl|bosTau2|chr10 (8844610-8844477) | |
| 781-914, gnl|canFam2|chr20 (58000659-58000550) | |
| 781-914, gnl|danRer3|chr14 (44883474-44883579) | |
| 781-914, gnl|dasNov1|scaffold_74446 (8880-8983) | |
| 781-914, gnl|echTel1|scaffold_317736 (32347-32244) | |
| 781-914, gnl|fr1|chrUn (197021154-197021263) | |
| 781-914, gnl|galGal2|chr28 (4198003-4197893) | |
| 781-914, gnl|Hg17|chr15 (63567207-63567074) | |
| 781-914, gnl|hg17|chr19 (4653029-4653141) | |
| 781-914, gnl|loxAfr1|scaffold_33912 (17637-17528) | |
| 781-914, gnl|mm7|chr17 (54362411-54362523) | |
| 781-914, gnl|Mm7|chr9 (65082688-65082821) | |
| 781-914, gnl|monDom2|scaffold_85 (1779098-1779204) | |
| 781-914, gnl|oryCun1|scaffold_177693 (56973-57076) | |
| 781-914, gnl|panTro1|chr20 (4932119-4932231) | |
| 781-914, gnl|rheMac2|chr19 (4589266-4589378) | |
| 781-914, gnl|rn3|chrUn (25593831-25593719) | |
| 781-914, gnl|tetNig1|chr15 (3914171-3914280) | |
| 781-914, gnl|xenTro1|scaffold_1169 (72126-72007) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (0.179824) |