Non-Coding RNA Search

Ss1.1-Ova1-OVRM10014F05.5

Sequence:


               
               TGTTGGCCTCTGGAAAGCTCTGCGCGGCGTCGGTGGCGGCTCTTCCGCCTGGCCGGCCTC
GGCCCTGGGCGAGCGGTCGCACGATGTGGCTGGGCCCGGAGGAGGTGCTGGTGGCCAACG
CGCTGTGGGTGACGGAGCGGGCCAACCCCTTCTTTGTGCTGCAGCGGCGCCGGGGCCACG
GCAAGGGCGGCGGGCTCACGGGTCTTCTCGTGGGCACCTTGGACGTGGTGCTGGACTCTA
GCGCCCGGGTGGCCCCTTACCGTATCCTGCACCAGACCCAGGACTCTCAGGTCTACTGGA
CAGTGGCATGCGGTTCTTCCCGCAAAGAAATCACAAAACACTGGGAATGGCTGGAAAACA
ACTTACTTCAGACTCTGTCCATCTTTGACAATGAGGAGGATATTACCACGTTCGTCAAGG
GCAAGATACATGGCATCATCGCAGAAGAGAACAAGAACCTGCAGCCCCAGGGAGACGAGG
ACCCTGGGAAGTTCAAGGAGGCCGAGCTGAAGATGCGGAAGCAGTTTGGGATGCCCGAGG
GGGAGAAGCTGGTCAACTACTACTCCTGCAGCTACTGGAAGGGCCATGTGCCCCGGCAGG
GCTGGCTCTACCTGACTGTCAACCACCTGTGTTTCTACTCCTTCCTGCTGGGCAAGGAGG
TGAGCCTGGTGGTGCGGTGGGTGGACGTCACACGGCTGGAGAAGAACGCCACACTGCTGT
TCCCTGAGAGCATCCGGGTGGACACCCGGGACCAGGAGCTCTTCTTCTCCATGTTCCTCA
ACATCACTGAGACCTACAAGCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTGGCCTCTGGAAAGCTCTGCGCGGCGTCGGTGGCGGCTCTTCCGCCTGGCCGGCCTC
GGCCCTGGGCGAGCGGTCGCACGATGTGGCTGGGCCCGGAGGAGGTGCTGGTGGCCAACG
CGCTGTGGGTGACGGAGCGGGCCAACCCCTTCTTTGTGCTGCAGCGGCGCCGGGGCCACG
GCAAGGGCGGCGGGCTCACGGGTCTTCTCGTGGGCACCTTGGACGTGGTGCTGGACTCTA
GCGCCCGGGTGGCCCCTTACCGTATCCTGCACCAGACCCAGGACTCTCAGGTCTACTGGA
CAGTGGCATGCGGTTCTTCCCGCAAAGAAATCACAAAACACTGGGAATGGCTGGAAAACA
ACTTACTTCAGACTCTGTCCATCTTTGACAATGAGGAGGATATTACCACGTTCGTCAAGG
GCAAGATACATGGCATCATCGCAGAAGAGAACAAGAACCTGCAGCCCCAGGGAGACGAGG
ACCCTGGGAAGTTCAAGGAGGCCGAGCTGAAGATGCGGAAGCAGTTTGGGATGCCCGAGG
GGGAGAAGCTGGTCAACTACTACTCCTGCAGCTACTGGAAGGGCCATGTGCCCCGGCAGG
GCTGGCTCTACCTGACTGTCAACCACCTGTGTTTCTACTCCTTCCTGCTGGGCAAGGAGG
TGAGCCTGGTGGTGCGGTGGGTGGACGTCACACGGCTGGAGAAGAACGCCACACTGCTGT
TCCCTGAGAGCATCCGGGTGGACACCCGGGACCAGGAGCTCTTCTTCTCCATGTTCCTCA
ACATCACTGAGACCTACAAGCTCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               429-547, + strand, RNAz p=0.681555

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               429-547, + strand, RNAz p=0.681555

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of AB014576, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB014576, +

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               17-203, gnl|bosTau2|chr7 (647272-647086)
               

               
               17-203, gnl|Hg17|chr5 (179267496-179267308)
               

               
               17-203, gnl|Mm7|chr11 (50088112-50088315)
               


               
               429-664, gnl|bosTau2|chr7 (633429-633193)
               

               
               429-664, gnl|Hg17|chr5 (179254223-179253987)
               

               
               429-664, gnl|Mm7|chr11 (50101781-50102017)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-203, gnl|bosTau2|chr7 (647272-647086)
               

               
               17-203, gnl|Hg17|chr5 (179267496-179267308)
               

               
               17-203, gnl|Mm7|chr11 (50088112-50088315)
               


               
               429-664, gnl|bosTau2|chr7 (633429-633193)
               

               
               429-664, gnl|Hg17|chr5 (179254223-179253987)
               

               
               429-664, gnl|Mm7|chr11 (50101781-50102017)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nco (0.161734)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	17-203, gnl\|bosTau2\|chr7 (647272-647086)
	17-203, gnl\|Hg17\|chr5 (179267496-179267308)
	17-203, gnl\|Mm7\|chr11 (50088112-50088315)

	429-664, gnl\|bosTau2\|chr7 (633429-633193)
	429-664, gnl\|Hg17\|chr5 (179254223-179253987)
	429-664, gnl\|Mm7\|chr11 (50101781-50102017)