Ss1.1-Ova1-OVRM10015C03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACACCCACCGGGTCTCGGCTGCTGCCCCGGCCGCGCGCGGAGGCGGGACGCGAGCCATGG AGGAGACGCCGCCCCCGCTGCTGGGCAGCAGCAAGCCGCACCTGGAAAAGTTGACGCTGG GCATCACCCGCATCCTAGAATCATCCCCAGGTGTGACAGAGGTGACCATCGTAGAAAAGG TACCCGCTGAACGTCATATGATTTCTTCATGGGAACAAAAAAATAACTGCCTTCTGCCTG AGGATCTGAAGAACTTTTACCTGATGACAAATGGCTTCCACATGACATGGAGTGTGAAGC TGGATGAGCATACCATTCCACTGGGCAGCATGGCAATTAACAGCATCTCAAAACTGACTC AACTCAACCAGTCTTCCATGTACTCACTTCCTAATGCACCAACTCTGGCAGACCTGGAGG ACGATACACAAGAAGCCGGTGAGAACCAGCCAGAGAAGCCTCACTTTGATTCTCGCAGTG TGATATTTGAACTGGATCCTTGCAATGGGAATGGGAAGGTTTGCCTTGTCTACAAAAGAG GGAAACCAGCATTAGCACAAGACTCTGAGATCTGGTTCCTGGACAGAGCATTATACTGGC ATTTTCTCACAGATACCTTTACTGCCTATTATCGCCTGCTCATCACCCACCTGGGCCTGC CCCAGTGGCAGTATGCCTTCACCAGCTATGGCATTAGCCCCCCAGGCCAAGCATGGTTCA ACATGTATNAACCCATCACCTACAACACAAACCTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACACCCACCGGGTCTCGGCTGCTGCCCCGGCCGCGCGCGGAGGCGGGACGCGAGCCATGG AGGAGACGCCGCCCCCGCTGCTGGGCAGCAGCAAGCCGCACCTGGAAAAGTTGACGCTGG GCATCACCCGCATCCTAGAATCATCCCCAGGTGTGACAGAGGTGACCATCGTAGAAAAGG TACCCGCTGAACGTCATATGATTTCTTCATGGGAACAAAAAAATAACTGCCTTCTGCCTG AGGATCTGAAGAACTTTTACCTGATGACAAATGGCTTCCACATGACATGGAGTGTGAAGC TGGATGAGCATACCATTCCACTGGGCAGCATGGCAATTAACAGCATCTCAAAACTGACTC AACTCAACCAGTCTTCCATGTACTCACTTCCTAATGCACCAACTCTGGCAGACCTGGAGG ACGATACACAAGAAGCCGGTGAGAACCAGCCAGAGAAGCCTCACTTTGATTCTCGCAGTG TGATATTTGAACTGGATCCTTGCAATGGGAATGGGAAGGTTTGCCTTGTCTACAAAAGAG GGAAACCAGCATTAGCACAAGACTCTGAGATCTGGTTCCTGGACAGAGCATTATACTGGC ATTTTCTCACAGATACCTTTACTGCCTATTATCGCCTGCTCATCACCCACCTGGGCCTGC CCCAGTGGCAGTATGCCTTCACCAGCTATGGCATTAGCCCCCCAGGCCAAGCATGGTTCA ACATGTATNAACCCATCACCTACAACACAAACCTAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 594-711, - strand, RNAz p=0.914768 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 594-711, - strand, RNAz p=0.914768 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 8-138, gnl|bosTau2|chr24 (14710955-14710825) | |
| 8-138, gnl|canFam2|chr7 (56379075-56378684) | |
| 8-138, gnl|dasNov1|scaffold_84570 (3691-3297) | |
| 8-138, gnl|echTel1|scaffold_315921 (131815-132181) | |
| 8-138, gnl|hg17|chr18 (32662630-32662996) | |
| 8-138, gnl|Hg17|chr18 (32662755-32662644) | |
| 8-138, gnl|loxAfr1|scaffold_7518 (12254-11860) | |
| 8-138, gnl|mm7|chr18 (25553170-25553585) | |
| 8-138, gnl|Mm7|chr18 (25553322-25553184) | |
| 8-138, gnl|monDom2|scaffold_4 (10196486-10196114) | |
| 8-138, gnl|oryCun1|scaffold_129045 (3981-4381) | |
| 8-138, gnl|panTro1|chr17 (28640318-28640684) | |
| 8-138, gnl|rheMac2|chr18 (29756757-29757123) | |
| 8-138, gnl|rn3|chr18 (17157551-17157145) | |
| 306-435, gnl|bosTau2|chr24 (14890769-14890898) | |
| 306-435, gnl|Hg17|chr18 (32639464-32639335) | |
| 306-435, gnl|Mm7|chr18 (25533900-25533771) | |
| 547-711, gnl|bosTau2|chr24 (14903557-14903720) | |
| 547-711, gnl|canFam2|chr7 (56444328-56444173) | |
| 547-711, gnl|danRer3|chrNA (130292687-130292537) | |
| 547-711, gnl|dasNov1|scaffold_80025 (3767-3922) | |
| 547-711, gnl|echTel1|scaffold_315921 (101646-101801) | |
| 547-711, gnl|fr1|chrUn (114771254-114771400) | |
| 547-711, gnl|galGal2|chrUn (7591507-7591352) | |
| 547-711, gnl|hg17|chr18 (32632406-32632561) | |
| 547-711, gnl|Hg17|chr18 (32632573-32632410) | |
| 547-711, gnl|loxAfr1|scaffold_7518 (48564-48409) | |
| 547-711, gnl|mm7|chr18 (25525099-25525254) | |
| 547-711, gnl|Mm7|chr18 (25525266-25525103) | |
| 547-711, gnl|monDom2|scaffold_4 (10267448-10267293) | |
| 547-711, gnl|oryCun1|scaffold_205918 (4103-3948) | |
| 547-711, gnl|panTro1|chr17 (28610346-28610501) | |
| 547-711, gnl|rheMac2|chr18 (29726111-29726266) | |
| 547-711, gnl|rn3|chr18 (16988800-16988955) | |
| 547-711, gnl|tetNig1|chr11 (764577-764427) | |
| 547-711, gnl|xenTro1|scaffold_617 (93758-93603) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-138, gnl|bosTau2|chr24 (14710955-14710825) | |
| 8-138, gnl|canFam2|chr7 (56379075-56378684) | |
| 8-138, gnl|dasNov1|scaffold_84570 (3691-3297) | |
| 8-138, gnl|echTel1|scaffold_315921 (131815-132181) | |
| 8-138, gnl|hg17|chr18 (32662630-32662996) | |
| 8-138, gnl|Hg17|chr18 (32662755-32662644) | |
| 8-138, gnl|loxAfr1|scaffold_7518 (12254-11860) | |
| 8-138, gnl|mm7|chr18 (25553170-25553585) | |
| 8-138, gnl|Mm7|chr18 (25553322-25553184) | |
| 8-138, gnl|monDom2|scaffold_4 (10196486-10196114) | |
| 8-138, gnl|oryCun1|scaffold_129045 (3981-4381) | |
| 8-138, gnl|panTro1|chr17 (28640318-28640684) | |
| 8-138, gnl|rheMac2|chr18 (29756757-29757123) | |
| 8-138, gnl|rn3|chr18 (17157551-17157145) | |
| 306-435, gnl|bosTau2|chr24 (14890769-14890898) | |
| 306-435, gnl|Hg17|chr18 (32639464-32639335) | |
| 306-435, gnl|Mm7|chr18 (25533900-25533771) | |
| 547-711, gnl|bosTau2|chr24 (14903557-14903720) | |
| 547-711, gnl|canFam2|chr7 (56444328-56444173) | |
| 547-711, gnl|danRer3|chrNA (130292687-130292537) | |
| 547-711, gnl|dasNov1|scaffold_80025 (3767-3922) | |
| 547-711, gnl|echTel1|scaffold_315921 (101646-101801) | |
| 547-711, gnl|fr1|chrUn (114771254-114771400) | |
| 547-711, gnl|galGal2|chrUn (7591507-7591352) | |
| 547-711, gnl|hg17|chr18 (32632406-32632561) | |
| 547-711, gnl|Hg17|chr18 (32632573-32632410) | |
| 547-711, gnl|loxAfr1|scaffold_7518 (48564-48409) | |
| 547-711, gnl|mm7|chr18 (25525099-25525254) | |
| 547-711, gnl|Mm7|chr18 (25525266-25525103) | |
| 547-711, gnl|monDom2|scaffold_4 (10267448-10267293) | |
| 547-711, gnl|oryCun1|scaffold_205918 (4103-3948) | |
| 547-711, gnl|panTro1|chr17 (28610346-28610501) | |
| 547-711, gnl|rheMac2|chr18 (29726111-29726266) | |
| 547-711, gnl|rn3|chr18 (16988800-16988955) | |
| 547-711, gnl|tetNig1|chr11 (764577-764427) | |
| 547-711, gnl|xenTro1|scaffold_617 (93758-93603) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.186393) | |
| nmm (0.132802) | |
| ebs (0.118301) |