Ss1.1-Ova1-OVRM10015H12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCGGCGGGTTCCCGGGTGTGTGTGTCTGAGTCTGTGTCTGAGTCTGTGTCTGGAAGCGG CGCGCGGCCCGGGACAAGCTCCGGGGCTTCCCATCTGAGGCGTCACCACTGTCACTACCA TCACCCACGGAGCCGCTACTAGTGGGGTGTAGACCCGGCCCTTCGCCGGGCAGAGAAGAT GTTGCCCCTGTCCATCAAGGACGATGAATACAAACCACCCAAGTTCAATCTGTTCGGCAA GATCTCGGGCTGGTTTAGGTCCATCCTGTCGGACAAGACGTCTCGGAACCTGTTTTTCTT CCTGTGCCTGAACCTCTCTTTCGCTTTTGTCGAACTACTCTACGGCATCTGGAGCAACTG CTTAGGCTTGATTTCCGACTCTTTTCACATGTTTTTCGATAGCACTGCCATTTTGGCTGG ATTGGCAGCATCTGTTATTTCAAAATGGAGAGATAATGATGCTTTCTCTTATGGGTATGT TAGAGCGGAAGTTCTGGCTGGCTTTGTCAATGGCCTGTTTTTGATCTTCACTGCTTTTTT TATTTTCTCAGAAGGAGTCGAGAGAGCCTTAGCCCCTCCAGATGTGCATCATGAGAGACT GCTTCTTGTTTCAATTCTTGGGTTTGTGGTAAACCTAGTAGGAATATTTGTTTTCAAGCA TGGAGGTCATGGACATTCTCATGGCTCTGGCCATGGACATAGTCATTCCCTCTTTAACGG TGCTCTCGAGCAGGCGCATGGCCACGGAGATCATTGCCACGGTCATGAACTGAAACATGG TGCTGGACATGGCCATGACCACACTCATGGACACGGACACTTTCATGCTCATGATGGCCC TTCCTTAAAAGAAACAACAGGACCCAGTAGACAGATTTTACAAGGTGTATTTTTACACAT TCTAGCAGATACACTTGGGAGTATTGGTGTAATTGCCTCTGCCATCATGATGCAAAATTT TGGTCTGATGATAGCGGATCCTATTTGTTCAATTCTGATAGCCATCCTCATAGTTGTAAG TGTTATTCCTCTTTTAAGAGAGTCTGTTGGAATATTAATGCAGAGAACTCCTCCCCTTTT GGAAAATATTCTGCCTCAGTGCTATCAGAGGGTGCAGCAGTTGCAAGGAGTGTACAGTTT ACAAGAACAGCACTTCTGGACCTTATGTTCTGATGTTTATGTTGGGACCTTGAAATTAGT AGTAGCACCTGATGCTGATGCCAGGTGGATTTTAAGCCAAACACATAATATTTTTACTCA GGCCGGAGTGAGACAACTTTATGTACAGATTGACTTTGCAGCCCTGTAACAAATGAAAAG AAATGATGCTTTTTTGGGGGGAAACCTAATTTTTCTGGTACTGTACAATCCAAAACATTG TACCTAGATTTTTAAAATAAAGAAATCATCACTACAACGCCCCAGCACCCAGCAGACCAG GTAGAGTCGGCCATTTGTGCTCTGCCAGGAGTTTACAGCTAAGGGATCAGAATTAAGAGG ACCTCTCCTAGACTTTTGGTCTTGTCTTTTGCGTGCTTCCCTCCAAACCATTTTGATTTC TGAGGTTTCTAGTTTGTTCCAGGGCCTCATTTTCTGTTTGCTTGTTTGTTTTTTGTTTGT TTTCATTTCAAATGCCCTCACTCCCAGCCCTCATCCTAGCCAGTAGGAAATTCAGTCTGT GGGCCTCTAATCACCTGGAATGTCTTCGCTGAAGCTGCTGGAAACCACTGCTTTCATTCC CACAAAACCAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCGGCGGGTTCCCGGGTGTGTGTGTCTGAGTCTGTGTCTGAGTCTGTGTCTGGAAGCGG CGCGCGGCCCGGGACAAGCTCCGGGGCTTCCCATCTGAGGCGTCACCACTGTCACTACCA TCACCCACGGAGCCGCTACTAGTGGGGTGTAGACCCGGCCCTTCGCCGGGCAGAGAAGAT GTTGCCCCTGTCCATCAAGGACGATGAATACAAACCACCCAAGTTCAATCTGTTCGGCAA GATCTCGGGCTGGTTTAGGTCCATCCTGTCGGACAAGACGTCTCGGAACCTGTTTTTCTT CCTGTGCCTGAACCTCTCTTTCGCTTTTGTCGAACTACTCTACGGCATCTGGAGCAACTG CTTAGGCTTGATTTCCGACTCTTTTCACATGTTTTTCGATAGCACTGCCATTTTGGCTGG ATTGGCAGCATCTGTTATTTCAAAATGGAGAGATAATGATGCTTTCTCTTATGGGTATGT TAGAGCGGAAGTTCTGGCTGGCTTTGTCAATGGCCTGTTTTTGATCTTCACTGCTTTTTT TATTTTCTCAGAAGGAGTCGAGAGAGCCTTAGCCCCTCCAGATGTGCATCATGAGAGACT GCTTCTTGTTTCAATTCTTGGGTTTGTGGTAAACCTAGTAGGAATATTTGTTTTCAAGCA TGGAGGTCATGGACATTCTCATGGCTCTGGCCATGGACATAGTCATTCCCTCTTTAACGG TGCTCTCGAGCAGGCGCATGGCCACGGAGATCATTGCCACGGTCATGAACTGAAACATGG TGCTGGACATGGCCATGACCACACTCATGGACACGGACACTTTCATGCTCATGATGGCCC TTCCTTAAAAGAAACAACAGGACCCAGTAGACAGATTTTACAAGGTGTATTTTTACACAT TCTAGCAGATACACTTGGGAGTATTGGTGTAATTGCCTCTGCCATCATGATGCAAAATTT TGGTCTGATGATAGCGGATCCTATTTGTTCAATTCTGATAGCCATCCTCATAGTTGTAAG TGTTATTCCTCTTTTAAGAGAGTCTGTTGGAATATTAATGCAGAGAACTCCTCCCCTTTT GGAAAATATTCTGCCTCAGTGCTATCAGAGGGTGCAGCAGTTGCAAGGAGTGTACAGTTT ACAAGAACAGCACTTCTGGACCTTATGTTCTGATGTTTATGTTGGGACCTTGAAATTAGT AGTAGCACCTGATGCTGATGCCAGGTGGATTTTAAGCCAAACACATAATATTTTTACTCA GGCCGGAGTGAGACAACTTTATGTACAGATTGACTTTGCAGCCCTGTAACAAATGAAAAG AAATGATGCTTTTTTGGGGGGAAACCTAATTTTTCTGGTACTGTACAATCCAAAACATTG TACCTAGATTTTTAAAATAAAGAAATCATCACTACAACGCCCCAGCACCCAGCAGACCAG GTAGAGTCGGCCATTTGTGCTCTGCCAGGAGTTTACAGCTAAGGGATCAGAATTAAGAGG ACCTCTCCTAGACTTTTGGTCTTGTCTTTTGCGTGCTTCCCTCCAAACCATTTTGATTTC TGAGGTTTCTAGTTTGTTCCAGGGCCTCATTTTCTGTTTGCTTGTTTGTTTTTTGTTTGT TTTCATTTCAAATGCCCTCACTCCCAGCCCTCATCCTAGCCAGTAGGAAATTCAGTCTGT GGGCCTCTAATCACCTGGAATGTCTTCGCTGAAGCTGCTGGAAACCACTGCTTTCATTCC CACAAAACCAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 143-260, - strand, RNAz p=0.605422 | |
| 878-1020, + strand, RNAz p=0.989574 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 143-260, - strand, RNAz p=0.605422 | |
| 878-1020, + strand, RNAz p=0.989574 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 31-260, gnl|bosTau2|chr3 (38013996-38013768) | |
| 31-260, gnl|Hg17|chr1 (101073687-101073921) | |
| 31-260, gnl|Mm7|chr3 (115782275-115782046) | |
| 360-477, gnl|bosTau2|chr3 (37999468-37999351) | |
| 360-477, gnl|canFam2|chr6 (52265780-52265652) | |
| 360-477, gnl|danRer3|chr22 (14483388-14483509) | |
| 360-477, gnl|dasNov1|scaffold_69506 (3574-3702) | |
| 360-477, gnl|echTel1|scaffold_276300 (15977-16105) | |
| 360-477, gnl|galGal2|chr8 (12111593-12111465) | |
| 360-477, gnl|hg17|chr1 (101084424-101084552) | |
| 360-477, gnl|Hg17|chr1 (101084428-101084545) | |
| 360-477, gnl|loxAfr1|scaffold_179062 (263-391) | |
| 360-477, gnl|mm7|chr3 (115767959-115767831) | |
| 360-477, gnl|Mm7|chr3 (115767953-115767836) | |
| 360-477, gnl|monDom2|scaffold_0 (18023312-18023177) | |
| 360-477, gnl|panTro1|chr1 (100131230-100131358) | |
| 360-477, gnl|rheMac2|chr1 (103967272-103967400) | |
| 360-477, gnl|rn3|chr2 (212112429-212112301) | |
| 360-477, gnl|tetNig1|chrUn_random (5988432-5988552) | |
| 360-477, gnl|xenTro1|scaffold_74 (2301874-2302002) | |
| 558-690, gnl|bosTau2|chr3 (37994556-37994424) | |
| 558-690, gnl|canFam2|chr6 (52260748-52260524) | |
| 558-690, gnl|danRer3|chr22 (14484242-14484424) | |
| 558-690, gnl|dasNov1|scaffold_69506 (8699-8921) | |
| 558-690, gnl|echTel1|scaffold_276300 (22403-22630) | |
| 558-690, gnl|galGal2|chr8 (12109461-12109240) | |
| 558-690, gnl|hg17|chr1 (101089627-101089853) | |
| 558-690, gnl|Hg17|chr1 (101089684-101089816) | |
| 558-690, gnl|loxAfr1|scaffold_258 (60088-60314) | |
| 558-690, gnl|mm7|chr3 (115765114-115764889) | |
| 558-690, gnl|Mm7|chr3 (115765056-115764924) | |
| 558-690, gnl|monDom2|scaffold_0 (18017242-18017013) | |
| 558-690, gnl|panTro1|chr1 (100136417-100136643) | |
| 558-690, gnl|rheMac2|chr1 (103972497-103972714) | |
| 558-690, gnl|rn3|chr2 (212108937-212108711) | |
| 558-690, gnl|tetNig1|chrUn_random (5988843-5988978) | |
| 558-690, gnl|xenTro1|scaffold_74 (2307710-2307908) | |
| 878-1020, gnl|bosTau2|chr3 (37977438-37977296) | |
| 878-1020, gnl|Hg17|chr1 (101099276-101099418) | |
| 878-1020, gnl|Mm7|chr3 (115753699-115753557) | |
| 1258-1752, gnl|bosTau2|chr3 (37921289-37920796) | |
| 1258-1752, gnl|Hg17|chr1 (101152383-101152887) | |
| 1258-1752, gnl|Mm7|chr3 (115721628-115721177) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 31-260, gnl|bosTau2|chr3 (38013996-38013768) | |
| 31-260, gnl|Hg17|chr1 (101073687-101073921) | |
| 31-260, gnl|Mm7|chr3 (115782275-115782046) | |
| 360-477, gnl|bosTau2|chr3 (37999468-37999351) | |
| 360-477, gnl|canFam2|chr6 (52265780-52265652) | |
| 360-477, gnl|danRer3|chr22 (14483388-14483509) | |
| 360-477, gnl|dasNov1|scaffold_69506 (3574-3702) | |
| 360-477, gnl|echTel1|scaffold_276300 (15977-16105) | |
| 360-477, gnl|galGal2|chr8 (12111593-12111465) | |
| 360-477, gnl|hg17|chr1 (101084424-101084552) | |
| 360-477, gnl|Hg17|chr1 (101084428-101084545) | |
| 360-477, gnl|loxAfr1|scaffold_179062 (263-391) | |
| 360-477, gnl|mm7|chr3 (115767959-115767831) | |
| 360-477, gnl|Mm7|chr3 (115767953-115767836) | |
| 360-477, gnl|monDom2|scaffold_0 (18023312-18023177) | |
| 360-477, gnl|panTro1|chr1 (100131230-100131358) | |
| 360-477, gnl|rheMac2|chr1 (103967272-103967400) | |
| 360-477, gnl|rn3|chr2 (212112429-212112301) | |
| 360-477, gnl|tetNig1|chrUn_random (5988432-5988552) | |
| 360-477, gnl|xenTro1|scaffold_74 (2301874-2302002) | |
| 558-690, gnl|bosTau2|chr3 (37994556-37994424) | |
| 558-690, gnl|canFam2|chr6 (52260748-52260524) | |
| 558-690, gnl|danRer3|chr22 (14484242-14484424) | |
| 558-690, gnl|dasNov1|scaffold_69506 (8699-8921) | |
| 558-690, gnl|echTel1|scaffold_276300 (22403-22630) | |
| 558-690, gnl|galGal2|chr8 (12109461-12109240) | |
| 558-690, gnl|hg17|chr1 (101089627-101089853) | |
| 558-690, gnl|Hg17|chr1 (101089684-101089816) | |
| 558-690, gnl|loxAfr1|scaffold_258 (60088-60314) | |
| 558-690, gnl|mm7|chr3 (115765114-115764889) | |
| 558-690, gnl|Mm7|chr3 (115765056-115764924) | |
| 558-690, gnl|monDom2|scaffold_0 (18017242-18017013) | |
| 558-690, gnl|panTro1|chr1 (100136417-100136643) | |
| 558-690, gnl|rheMac2|chr1 (103972497-103972714) | |
| 558-690, gnl|rn3|chr2 (212108937-212108711) | |
| 558-690, gnl|tetNig1|chrUn_random (5988843-5988978) | |
| 558-690, gnl|xenTro1|scaffold_74 (2307710-2307908) | |
| 878-1020, gnl|bosTau2|chr3 (37977438-37977296) | |
| 878-1020, gnl|Hg17|chr1 (101099276-101099418) | |
| 878-1020, gnl|Mm7|chr3 (115753699-115753557) | |
| 1258-1752, gnl|bosTau2|chr3 (37921289-37920796) | |
| 1258-1752, gnl|Hg17|chr1 (101152383-101152887) | |
| 1258-1752, gnl|Mm7|chr3 (115721628-115721177) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| eep (0.245128) | |
| ski (0.146735) | |
| nmm (0.132802) | |
| jca (0.11396) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.245128) | |
| ski (0.146735) | |
| nmm (0.132802) | |
| jca (0.11396) |