Ss1.1-Ova1-OVRM10017C09.5
|
GACTCGCCCCGGAGGTCAGTCGGCAACCTCTGTGCGGGGGGCTGGGAAACCCAGGTGTCC
AGGCAGTGGGCATTGCAAGGAGAATTGTATCTAGGGGTTCACTGTGACCCTTGCCACCTG
CCTCTCCACCCACACCCGAGGTTCTCTCCGTCGAGCCTGGTCCCACCCACGCTGCCTCGG
CGTGGGGCAAGGAGTCTCCTCGGCCGCACCTCCTGACTTCCCGCGGCATCTCACTCAGGC
CTCTGAAGAGCTTAGTTTGCCCCCCTGGAGAGTGGACCGCTGGCTTGGAGGTGTGTGCCC
GGGAGCGGGGGACCCTGGGGGCCTGCTCACAACAGGCTTGTTCTTGCAGAGTCGCTCAAA
AGTAGGGCCCCAGGGCTCGGAGCAGCTGGGTATGGGTACTGAGAGTGAAAGTCCAGAACC
GGACTGCCAGAAACAGTTCCAGGCTGCAGTCAACGTCATTCAGAACCTGCCTAAGAACGG
CTCTTACCGCCCATCCTACGAAGAGATGCTGCGATTCTACAGCTACTACAAGCAGGCTAC
CGTGGGTCCCTGCCTGGTCCCCCGGCCTGGGTTCTGGGACCCTATTGGACGTTATAAATG
GGACGCCTGGAACAGCCTGGGCAAGATGAGCAGGGAGGAGGCCATGTCTGCCTACATCAC
TGAGATGAAGCTGGTGGCACAGAAGGTGATCGACACGGTGCCCCTGGGCGAAGTGGCAGG
GGACATGTTTGGTTACTTCGAGCCCCTGTACCAGGTGATCCCTGACATGCCGAGGCCCCC
AGAGACCTTCCTGAGAAGGATCACAGGTTGGAAAGAGCAGGTACTGAATGGAGATGCTGG
GGCTGCCCCAGAACCTCCCCGCCTCCCCAAGGAACCAGCACCCCCAAGCCCAGAGTCCCA
GCCCCCCAGGGACCAGGACTCTGAGGTTTTTTGTGATTCCCTGGAGCAGCTGGAGCCTGA
GCTGGTTTGGGCAGAGCAGGGGAGTGCCCATGGGGGAGAGCTCGACGCCAGGAACAGCCC
GGAGCCTCCTGCAGGGAAAGGGAAGGTGGAAGGCAGCCCACCGGGGTCCCAGGAATTGGA
CGCATGGCTGGTGGGGACAGTGCGGGCACTGCAGGAGAGCATGCGGGACGTCCAGGGCAG
ACTGCGGAGCCTGGAGGGCATGCCCGGCCCCCCCAAGCAGAAGTCCCCACCCAGTGCCAG
GCCTTGGCCCCTCAGGCTCTCCGGTCCCACTCTGCTCTTCTTCCTCCTGTGGCCCTTCAT
CGTCCAGTGGCTCTTGCGACAGTTTCGGACCCAGAAGAGGTGATTTTCCATGACGGAGGT
CTCTGCAGCCAACCGAGGAGGCTCTGAGCCCTGTCTTGCTGTGCCCTGAGCCTTCCTATG
GGTTTAGGGAGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GACTCGCCCCGGAGGTCAGTCGGCAACCTCTGTGCGGGGGGCTGGGAAACCCAGGTGTCC
AGGCAGTGGGCATTGCAAGGAGAATTGTATCTAGGGGTTCACTGTGACCCTTGCCACCTG
CCTCTCCACCCACACCCGAGGTTCTCTCCGTCGAGCCTGGTCCCACCCACGCTGCCTCGG
CGTGGGGCAAGGAGTCTCCTCGGCCGCACCTCCTGACTTCCCGCGGCATCTCACTCAGGC
CTCTGAAGAGCTTAGTTTGCCCCCCTGGAGAGTGGACCGCTGGCTTGGAGGTGTGTGCCC
GGGAGCGGGGGACCCTGGGGGCCTGCTCACAACAGGCTTGTTCTTGCAGAGTCGCTCAAA
AGTAGGGCCCCAGGGCTCGGAGCAGCTGGGTATGGGTACTGAGAGTGAAAGTCCAGAACC
GGACTGCCAGAAACAGTTCCAGGCTGCAGTCAACGTCATTCAGAACCTGCCTAAGAACGG
CTCTTACCGCCCATCCTACGAAGAGATGCTGCGATTCTACAGCTACTACAAGCAGGCTAC
CGTGGGTCCCTGCCTGGTCCCCCGGCCTGGGTTCTGGGACCCTATTGGACGTTATAAATG
GGACGCCTGGAACAGCCTGGGCAAGATGAGCAGGGAGGAGGCCATGTCTGCCTACATCAC
TGAGATGAAGCTGGTGGCACAGAAGGTGATCGACACGGTGCCCCTGGGCGAAGTGGCAGG
GGACATGTTTGGTTACTTCGAGCCCCTGTACCAGGTGATCCCTGACATGCCGAGGCCCCC
AGAGACCTTCCTGAGAAGGATCACAGGTTGGAAAGAGCAGGTACTGAATGGAGATGCTGG
GGCTGCCCCAGAACCTCCCCGCCTCCCCAAGGAACCAGCACCCCCAAGCCCAGAGTCCCA
GCCCCCCAGGGACCAGGACTCTGAGGTTTTTTGTGATTCCCTGGAGCAGCTGGAGCCTGA
GCTGGTTTGGGCAGAGCAGGGGAGTGCCCATGGGGGAGAGCTCGACGCCAGGAACAGCCC
GGAGCCTCCTGCAGGGAAAGGGAAGGTGGAAGGCAGCCCACCGGGGTCCCAGGAATTGGA
CGCATGGCTGGTGGGGACAGTGCGGGCACTGCAGGAGAGCATGCGGGACGTCCAGGGCAG
ACTGCGGAGCCTGGAGGGCATGCCCGGCCCCCCCAAGCAGAAGTCCCCACCCAGTGCCAG
GCCTTGGCCCCTCAGGCTCTCCGGTCCCACTCTGCTCTTCTTCCTCCTGTGGCCCTTCAT
CGTCCAGTGGCTCTTGCGACAGTTTCGGACCCAGAAGAGGTGATTTTCCATGACGGAGGT
CTCTGCAGCCAACCGAGGAGGCTCTGAGCCCTGTCTTGCTGTGCCCTGAGCCTTCCTATG
GGTTTAGGGAGA
|
|
gi|57091413|ref|XP_548051.1| |
Protein identifier
|
gi|57091413|ref|XP_548051.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
81-480, gnl|bosTau2|chr19 (37211091-37210697) |
|
81-480, gnl|Hg17|chr17 (40568739-40569126) |
|
81-480, gnl|Mm7|chr11 (103212283-103212686) |
| |
|
684-808, gnl|bosTau2|chr19 (37209855-37209731) |
|
684-808, gnl|canFam2|chr9 (21712972-21712859) |
|
684-808, gnl|danRer3|chr7 (12187007-12187120) |
|
684-808, gnl|dasNov1|scaffold_69796 (8850-8737) |
|
684-808, gnl|echTel1|scaffold_319213 (51940-52053) |
|
684-808, gnl|hg17|chr17 (40569906-40570019) |
|
684-808, gnl|Hg17|chr17 (40569910-40570034) |
|
684-808, gnl|loxAfr1|scaffold_14460 (11217-11104) |
|
684-808, gnl|mm7|chr11 (103213468-103213581) |
|
684-808, gnl|Mm7|chr11 (103213472-103213596) |
|
684-808, gnl|monDom2|scaffold_18 (41315043-41314930) |
|
684-808, gnl|panTro1|chr19 (43849580-43849693) |
|
684-808, gnl|rheMac2|chr16 (55233597-55233710) |
|
684-808, gnl|rn3|chr10 (92292669-92292782) |
| |
|
1176-1389, gnl|bosTau2|chr19 (37205419-37205210) |
|
1176-1389, gnl|Hg17|chr17 (40576588-40576793) |
|
1176-1389, gnl|Mm7|chr11 (103220578-103220791) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
81-480, gnl|bosTau2|chr19 (37211091-37210697) |
|
81-480, gnl|Hg17|chr17 (40568739-40569126) |
|
81-480, gnl|Mm7|chr11 (103212283-103212686) |
| |
|
684-808, gnl|bosTau2|chr19 (37209855-37209731) |
|
684-808, gnl|canFam2|chr9 (21712972-21712859) |
|
684-808, gnl|danRer3|chr7 (12187007-12187120) |
|
684-808, gnl|dasNov1|scaffold_69796 (8850-8737) |
|
684-808, gnl|echTel1|scaffold_319213 (51940-52053) |
|
684-808, gnl|hg17|chr17 (40569906-40570019) |
|
684-808, gnl|Hg17|chr17 (40569910-40570034) |
|
684-808, gnl|loxAfr1|scaffold_14460 (11217-11104) |
|
684-808, gnl|mm7|chr11 (103213468-103213581) |
|
684-808, gnl|Mm7|chr11 (103213472-103213596) |
|
684-808, gnl|monDom2|scaffold_18 (41315043-41314930) |
|
684-808, gnl|panTro1|chr19 (43849580-43849693) |
|
684-808, gnl|rheMac2|chr16 (55233597-55233710) |
|
684-808, gnl|rn3|chr10 (92292669-92292782) |
| |
|
1176-1389, gnl|bosTau2|chr19 (37205419-37205210) |
|
1176-1389, gnl|Hg17|chr17 (40576588-40576793) |
|
1176-1389, gnl|Mm7|chr11 (103220578-103220791) |
|
pla (0.133672) |
|
cty (0.10408) |
|
pla (0.133672) |
|
cty (0.10408) |
