Ss1.1-Ova1-OVRM10017D03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCTGGGAAGGGGCTGGTGCAGTGGTAGTTGGAGTCTGTTCTCGGGCCTGAGCCTCGAG GCCAGGCTCCTGGGTGTCGTTAATGTTCGGGGCCGCCGGGCGCCAACCGATCGGAGCTCC AGCCGCCGGGAACAGCTGGCATTTCAGTCGAACCATGGAAGAGCTGGTTCATGATCTTGT CTCAGCCTTAGAGGAGAGCTCAGAGCAAGCGCGAGGTGGTTTCGCTGAAACGGGAGATCA TTCTCGAAGCCTGTCCTGCCCTCTGAAACGCCAGGCAAGGAAACGGAGAGGGAGGAAACG GAGGTCCTATAATGCCCATCACCCCTGGGAGACCGGACACTGCTTAAGCGAAGGCTCCGA CTCTAGTTTGGAAGAAGCAAGCAGGGACTATAGAGAGAATCACAGCAATAATAAAAAAGA TCACAGTGACTCTGACGACCAGATGTTGGTGGCAAAGCGCAGGCCATCCTCCAACTTAAA TAATAACGTCCGAGGGAAGAGACCTCTGTGGCACGAGTCCGACTTTGCAGTGGACAGCCT CGGCAACCGGACGCTGCGCCGGCGCAGGAAGGTCAAGCGCATGGCCGTGGACCTCCCGCA GGACAGTGCCAGCAAACGGCCCATGAGCCAGCCCCCCGAAGGCTGCAGGGACCAGGACGT GGACAATGATAACAGAGCGTACCAATATCAAGAGTTCACCAAGAACAAAGTCAAAAAAAG GAGGCTGAAAATAGCTAGGCAAGGACCAAAAACCCAAGACGAAGGAGTAGTTTTAGAAAG CGAGGAAGTAAGCCAGACCAACAAGGACAAAATGGACTACGAAGAGCAGAAAGTCTCAGA TGAACTCATGAGTGAAAGTGATTCCAGTAGTCTCAGCAGCACTGATGCTGGTTTGTTTAC CAATGATGAGGGAAGACAAGGTGATGATGAGCAGAGCGACTGGTTTTACGAAAAGGAGTC GGGTGGAGCATGTGGCATCACTGGAGTCATTCCGTGGTGGGAAAAGGAAGACCCAACCGA GCTAGACAAAAATCTACCCGATCCTGTCTTTGAAAGTATCCTAACTGGTTCTTTCCCACT TATGTCCCATCCGGGAAGAAGAGGTTTCCAAGCTAGACTCAGTCGCCTTCATGGAATGCC TTCCAAGAATATTAAAAAGTCCGGAGGGACCCCAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCTGGGAAGGGGCTGGTGCAGTGGTAGTTGGAGTCTGTTCTCGGGCCTGAGCCTCGAG GCCAGGCTCCTGGGTGTCGTTAATGTTCGGGGCCGCCGGGCGCCAACCGATCGGAGCTCC AGCCGCCGGGAACAGCTGGCATTTCAGTCGAACCATGGAAGAGCTGGTTCATGATCTTGT CTCAGCCTTAGAGGAGAGCTCAGAGCAAGCGCGAGGTGGTTTCGCTGAAACGGGAGATCA TTCTCGAAGCCTGTCCTGCCCTCTGAAACGCCAGGCAAGGAAACGGAGAGGGAGGAAACG GAGGTCCTATAATGCCCATCACCCCTGGGAGACCGGACACTGCTTAAGCGAAGGCTCCGA CTCTAGTTTGGAAGAAGCAAGCAGGGACTATAGAGAGAATCACAGCAATAATAAAAAAGA TCACAGTGACTCTGACGACCAGATGTTGGTGGCAAAGCGCAGGCCATCCTCCAACTTAAA TAATAACGTCCGAGGGAAGAGACCTCTGTGGCACGAGTCCGACTTTGCAGTGGACAGCCT CGGCAACCGGACGCTGCGCCGGCGCAGGAAGGTCAAGCGCATGGCCGTGGACCTCCCGCA GGACAGTGCCAGCAAACGGCCCATGAGCCAGCCCCCCGAAGGCTGCAGGGACCAGGACGT GGACAATGATAACAGAGCGTACCAATATCAAGAGTTCACCAAGAACAAAGTCAAAAAAAG GAGGCTGAAAATAGCTAGGCAAGGACCAAAAACCCAAGACGAAGGAGTAGTTTTAGAAAG CGAGGAAGTAAGCCAGACCAACAAGGACAAAATGGACTACGAAGAGCAGAAAGTCTCAGA TGAACTCATGAGTGAAAGTGATTCCAGTAGTCTCAGCAGCACTGATGCTGGTTTGTTTAC CAATGATGAGGGAAGACAAGGTGATGATGAGCAGAGCGACTGGTTTTACGAAAAGGAGTC GGGTGGAGCATGTGGCATCACTGGAGTCATTCCGTGGTGGGAAAAGGAAGACCCAACCGA GCTAGACAAAAATCTACCCGATCCTGTCTTTGAAAGTATCCTAACTGGTTCTTTCCCACT TATGTCCCATCCGGGAAGAAGAGGTTTCCAAGCTAGACTCAGTCGCCTTCATGGAATGCC TTCCAAGAATATTAAAAAGTCCGGAGGGACCCCAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 177-296, + strand, RNAz p=0.511513 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 177-296, + strand, RNAz p=0.511513 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 138-858, gnl|bosTau2|chr16 (9180327-9179607) | |
| 138-858, gnl|Hg17|chr1 (214182237-214181520) | |
| 138-858, gnl|Mm7|chr1 (186750908-186751625) | |
| 919-1105, gnl|bosTau2|chr16 (9170867-9170681) | |
| 919-1105, gnl|canFam2|chr38 (15830629-15830843) | |
| 919-1105, gnl|danRer3|chr20 (54228824-54229002) | |
| 919-1105, gnl|dasNov1|scaffold_1291 (56442-56656) | |
| 919-1105, gnl|echTel1|scaffold_85854 (628-841) | |
| 919-1105, gnl|fr1|chrUn (102978784-102978587) | |
| 919-1105, gnl|galGal2|chr3 (16091399-16091181) | |
| 919-1105, gnl|hg17|chr1 (214172617-214172831) | |
| 919-1105, gnl|Hg17|chr1 (214172810-214172624) | |
| 919-1105, gnl|loxAfr1|scaffold_21400 (20383-20597) | |
| 919-1105, gnl|mm7|chr1 (186758730-186758521) | |
| 919-1105, gnl|Mm7|chr1 (186758535-186758721) | |
| 919-1105, gnl|monDom2|scaffold_13 (23025830-23026044) | |
| 919-1105, gnl|oryCun1|scaffold_169714 (2184-2396) | |
| 919-1105, gnl|panTro1|chr1 (197899622-197899836) | |
| 919-1105, gnl|rheMac2|chr1 (152809508-152809294) | |
| 919-1105, gnl|rn3|chr13 (103559923-103559715) | |
| 919-1105, gnl|tetNig1|chr14 (6113845-6113642) | |
| 919-1105, gnl|xenTro1|scaffold_39 (1400800-1401009) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 138-858, gnl|bosTau2|chr16 (9180327-9179607) | |
| 138-858, gnl|Hg17|chr1 (214182237-214181520) | |
| 138-858, gnl|Mm7|chr1 (186750908-186751625) | |
| 919-1105, gnl|bosTau2|chr16 (9170867-9170681) | |
| 919-1105, gnl|canFam2|chr38 (15830629-15830843) | |
| 919-1105, gnl|danRer3|chr20 (54228824-54229002) | |
| 919-1105, gnl|dasNov1|scaffold_1291 (56442-56656) | |
| 919-1105, gnl|echTel1|scaffold_85854 (628-841) | |
| 919-1105, gnl|fr1|chrUn (102978784-102978587) | |
| 919-1105, gnl|galGal2|chr3 (16091399-16091181) | |
| 919-1105, gnl|hg17|chr1 (214172617-214172831) | |
| 919-1105, gnl|Hg17|chr1 (214172810-214172624) | |
| 919-1105, gnl|loxAfr1|scaffold_21400 (20383-20597) | |
| 919-1105, gnl|mm7|chr1 (186758730-186758521) | |
| 919-1105, gnl|Mm7|chr1 (186758535-186758721) | |
| 919-1105, gnl|monDom2|scaffold_13 (23025830-23026044) | |
| 919-1105, gnl|oryCun1|scaffold_169714 (2184-2396) | |
| 919-1105, gnl|panTro1|chr1 (197899622-197899836) | |
| 919-1105, gnl|rheMac2|chr1 (152809508-152809294) | |
| 919-1105, gnl|rn3|chr13 (103559923-103559715) | |
| 919-1105, gnl|tetNig1|chr14 (6113845-6113642) | |
| 919-1105, gnl|xenTro1|scaffold_39 (1400800-1401009) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.127291) |