Non-Coding RNA Search

Ss1.1-Ova1-OVRM10018F06.5

Sequence:


               
               TTCCTCATTGGGCGGAAGGTTCGGTGGCAGTCGTCGGTCTTCCAGCTGGTGGGAGTTGGC
GTCGCGGTGCTGGGCGCTGGGACCCTAGTTTATATAGTTTTGGAAGTCGGGCTGTGGGGT
CGCCCCTGTCTTTCTGATCCTCGCTTTCCCGGGTTTACTCCCCCAGCGTGGGGCTTCGCG
AAGGATTTCCCGGCCCCTTTGGGCCACGGCGGTGGCGGTGCCTTTTGCGATTTTCTTGTA
ATCACATCTCAAAGCCTTCAAGATGGTACTAGCAGACCTTGGAAGAAAAATAACATCAGC
ATTACGCTCCTTGAGCAATGCCACCATTATCAATGAAGAGGTATTAAATGCTATGCTAAA
AGAAGTATGTACAGCATTATTGGAAGCAGACGTTAATATTAAACTAGTGAAACAACTAAG
AGAAAATGTAAAGTCTGCTATTGATCTTGAAGAAATGGCGTCTGGTCTTAACAAAAGGAA
AATGATTCAGCATGCTGTTTTTAAAGAACTTGTGAAGCTTGTAGACCCTGGAGTTAAAGC
ATGGACACCCACTAAAGGTAAACAGAACGTGATCATGTTTGTTGGATTGCAAGGCAGTGG
TAAAACAACAACATGTTCAAAGTTAGCATATTATTACCAGAGGAAAGGTTGGAAGACCTG
TTTGATATGTGCAGACACATTCAGAGCAGGAGCTTTTGACCAGCTAAAACAGAATGCAAC
CAAAGCAAGAATTCCATTTTATGGAAGCTATACAGAAATGGATCCTGTTATCATTGCCTC
GGAAGGAGTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTCATTGGGCGGAAGGTTCGGTGGCAGTCGTCGGTCTTCCAGCTGGTGGGAGTTGGC
GTCGCGGTGCTGGGCGCTGGGACCCTAGTTTATATAGTTTTGGAAGTCGGGCTGTGGGGT
CGCCCCTGTCTTTCTGATCCTCGCTTTCCCGGGTTTACTCCCCCAGCGTGGGGCTTCGCG
AAGGATTTCCCGGCCCCTTTGGGCCACGGCGGTGGCGGTGCCTTTTGCGATTTTCTTGTA
ATCACATCTCAAAGCCTTCAAGATGGTACTAGCAGACCTTGGAAGAAAAATAACATCAGC
ATTACGCTCCTTGAGCAATGCCACCATTATCAATGAAGAGGTATTAAATGCTATGCTAAA
AGAAGTATGTACAGCATTATTGGAAGCAGACGTTAATATTAAACTAGTGAAACAACTAAG
AGAAAATGTAAAGTCTGCTATTGATCTTGAAGAAATGGCGTCTGGTCTTAACAAAAGGAA
AATGATTCAGCATGCTGTTTTTAAAGAACTTGTGAAGCTTGTAGACCCTGGAGTTAAAGC
ATGGACACCCACTAAAGGTAAACAGAACGTGATCATGTTTGTTGGATTGCAAGGCAGTGG
TAAAACAACAACATGTTCAAAGTTAGCATATTATTACCAGAGGAAAGGTTGGAAGACCTG
TTTGATATGTGCAGACACATTCAGAGCAGGAGCTTTTGACCAGCTAAAACAGAATGCAAC
CAAAGCAAGAATTCCATTTTATGGAAGCTATACAGAAATGGATCCTGTTATCATTGCCTC
GGAAGGAGTGGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|48106051|ref|XP_393047.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|48106051|ref|XP_393047.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-229, gnl|bosTau2|chr21 (29765768-29765996)
               

               
               1-229, gnl|Hg17|chr14 (34521943-34522172)
               

               
               1-229, gnl|Mm7|chr12 (53048860-53049088)
               


               
               513-636, gnl|bosTau2|chr21 (29781840-29781963)
               

               
               513-636, gnl|Hg17|chr14 (34546235-34546358)
               

               
               513-636, gnl|Mm7|chr12 (53064162-53064284)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-229, gnl|bosTau2|chr21 (29765768-29765996)
               

               
               1-229, gnl|Hg17|chr14 (34521943-34522172)
               

               
               1-229, gnl|Mm7|chr12 (53048860-53049088)
               


               
               513-636, gnl|bosTau2|chr21 (29781840-29781963)
               

               
               513-636, gnl|Hg17|chr14 (34546235-34546358)
               

               
               513-636, gnl|Mm7|chr12 (53064162-53064284)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cbl (0.229595)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               spl (0.143184)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               spl (0.143184)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	1-229, gnl\|bosTau2\|chr21 (29765768-29765996)
	1-229, gnl\|Hg17\|chr14 (34521943-34522172)
	1-229, gnl\|Mm7\|chr12 (53048860-53049088)

	513-636, gnl\|bosTau2\|chr21 (29781840-29781963)
	513-636, gnl\|Hg17\|chr14 (34546235-34546358)
	513-636, gnl\|Mm7\|chr12 (53064162-53064284)

	cbl (0.229595)
	nlu (0.191681)
	ill (0.175593)
	spl (0.143184)
	med (0.116252)
	jej (0.0989218)