Non-Coding RNA Search

Ss1.1-Ova1-OVRM10019B07.5

Sequence:


               
               TTCTGGTATTTAACAGCTGTTAAAATATTTATAGAAAATGAAAGCAAATTGGTATAAATT
TTTAAACAACTATTTTTGTAGAAAAAGATTAGTGACAACGCATAAAGATGTTCTCTGAAC
GTGTCGGCTTCTAGAAAATAAAAATTCTTACAAAATTTTGAACATGAAAATCAACTAAAT
AGCATGCAAGATCATGGACTCTGCCTTAGATATTTTATTTGGGAGAATTCAGAAATTAGG
AGCTTGAGTTTATAGAGCTTGCATTGTGTCTAAAATCTTTTTAATGAATACTATTTGCAT
TTATTGAAAACTCACAATGGAGTTATGTATGAATGCAAAGAAATGAACTCCTTCTTAAAT
TGTGTGATAGGGTAAGTCGAAGTGCAGTGTTTGTTCCACCTGTGCCATGTTGTTATTTCA
TGGACTGGCCCTACGTTAAGAGAAATAACAGTGTCTTCACCATTCCGAAGGGTGACAGAA
TGTGGATGACCCAAGTGCTGTTGGGAAGGTCTAGTTTTAGAAACTGCCTAATTTACGGGG
GTTGGAATCAAACTCTTTTCTAAACATTAATAACCTATCTGATTCAAGTCAAATTTTTGC
TGAAAGTCACAGTTTTAAAATGGGACACTTTCTCTGAGGTGCACTGGGCATTTGGAGAAT
GGTTCTTGCCTTGACTCTTGGTTATGCCATCTGTTATCACGTGTTTAGAAGGATTCTTCT
CACGGAGATGCATGGGGAGAGTGATATGATATTCATGTTTATTCTGCTTCATTTTTAAGG
AAAATAAACATGTTCCAAAAGACACCACTAAAATAAGCGTTTGAACAAATTTCAGTTTCT
AGGTTGTTCTTAATGCCACCTAAGTAAACATATACATTTGAATTGACTTTAAGTGGTTTC
GTCTGTTGGATGAACTTGACACGTCCGTGTCACTGTTGACATCAACCGTTATACTTCACA
GAAGACCATGTATTTGTGTGTTTTGGATTCCTTAAGAAGTAAACTCAAAGAAAAAAGGAA
AAAGCAAATGCATATAATTGTATCAGAAGGTGCACAGTGTGTCTCAACAGGTACCACCAG
GCAGCGAGACCCTCCCGCGCCGAGACCCCGGGGTGCACACACCTGCCCAGCCTTGACCGC
ACCTGGTTGATGACACACGAAAGCTCCCAAAAGTGAATTGTGGCGCAGTGACTCTGATAA
GTGTGAGAACAAGGAAAACTCAGCCGGACCTGGGGTTGGAGCAAATACCACCACGATGCT
CCTGCTTCAATCTGGAAGTTTCCTCTCTCAATCCTTTGAGCCCGTCCATGTCTTCACACC
CTAAAGACTGCATCAGCACTTCCCTCCTTTATGCCAACACCTTTCTGTGTCAACTTTTGA
GGCTCCCCCAACCCATAAGCTTTCTGGTCTATTGGGGCAAATTTAAAAGTTTACAAGTAC
GTTCTTTCATTGAGAAGAAAAGCATCGCAAGACGTTTAAGTAGCGAACAGACAGACCATA
ATTTATTGAGGCTTTAGGAAGCCATTTAGCATGTAGTCATACTTATTTATAACACCAAGC
AAAGCTAATAATGTTATGGTTTTATTGAGAAACAGCTGTGGTCTCTTTTTCTTAAACTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTGGTATTTAACAGCTGTTAAAATATTTATAGAAAATGAAAGCAAATTGGTATAAATT
TTTAAACAACTATTTTTGTAGAAAAAGATTAGTGACAACGCATAAAGATGTTCTCTGAAC
GTGTCGGCTTCTAGAAAATAAAAATTCTTACAAAATTTTGAACATGAAAATCAACTAAAT
AGCATGCAAGATCATGGACTCTGCCTTAGATATTTTATTTGGGAGAATTCAGAAATTAGG
AGCTTGAGTTTATAGAGCTTGCATTGTGTCTAAAATCTTTTTAATGAATACTATTTGCAT
TTATTGAAAACTCACAATGGAGTTATGTATGAATGCAAAGAAATGAACTCCTTCTTAAAT
TGTGTGATAGGGTAAGTCGAAGTGCAGTGTTTGTTCCACCTGTGCCATGTTGTTATTTCA
TGGACTGGCCCTACGTTAAGAGAAATAACAGTGTCTTCACCATTCCGAAGGGTGACAGAA
TGTGGATGACCCAAGTGCTGTTGGGAAGGTCTAGTTTTAGAAACTGCCTAATTTACGGGG
GTTGGAATCAAACTCTTTTCTAAACATTAATAACCTATCTGATTCAAGTCAAATTTTTGC
TGAAAGTCACAGTTTTAAAATGGGACACTTTCTCTGAGGTGCACTGGGCATTTGGAGAAT
GGTTCTTGCCTTGACTCTTGGTTATGCCATCTGTTATCACGTGTTTAGAAGGATTCTTCT
CACGGAGATGCATGGGGAGAGTGATATGATATTCATGTTTATTCTGCTTCATTTTTAAGG
AAAATAAACATGTTCCAAAAGACACCACTAAAATAAGCGTTTGAACAAATTTCAGTTTCT
AGGTTGTTCTTAATGCCACCTAAGTAAACATATACATTTGAATTGACTTTAAGTGGTTTC
GTCTGTTGGATGAACTTGACACGTCCGTGTCACTGTTGACATCAACCGTTATACTTCACA
GAAGACCATGTATTTGTGTGTTTTGGATTCCTTAAGAAGTAAACTCAAAGAAAAAAGGAA
AAAGCAAATGCATATAATTGTATCAGAAGGTGCACAGTGTGTCTCAACAGGTACCACCAG
GCAGCGAGACCCTCCCGCGCCGAGACCCCGGGGTGCACACACCTGCCCAGCCTTGACCGC
ACCTGGTTGATGACACACGAAAGCTCCCAAAAGTGAATTGTGGCGCAGTGACTCTGATAA
GTGTGAGAACAAGGAAAACTCAGCCGGACCTGGGGTTGGAGCAAATACCACCACGATGCT
CCTGCTTCAATCTGGAAGTTTCCTCTCTCAATCCTTTGAGCCCGTCCATGTCTTCACACC
CTAAAGACTGCATCAGCACTTCCCTCCTTTATGCCAACACCTTTCTGTGTCAACTTTTGA
GGCTCCCCCAACCCATAAGCTTTCTGGTCTATTGGGGCAAATTTAAAAGTTTACAAGTAC
GTTCTTTCATTGAGAAGAAAAGCATCGCAAGACGTTTAAGTAGCGAACAGACAGACCATA
ATTTATTGAGGCTTTAGGAAGCCATTTAGCATGTAGTCATACTTATTTATAACACCAAGC
AAAGCTAATAATGTTATGGTTTTATTGAGAAACAGCTGTGGTCTCTTTTTCTTAAACTGG

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               1-1005, gnl|bosTau2|chr3 (37352289-37353317)
               

               
               1-1005, gnl|Hg17|chr1 (95372115-95373152)
               

               
               1-1005, gnl|Mm7|chr3 (120976480-120975476)
               


               
               1019-1294, gnl|bosTau2|chr3 (37353306-37353594)
               

               
               1019-1294, gnl|Hg17|chr1 (95373140-95373414)
               

               
               1019-1294, gnl|Mm7|chr3 (120975486-120975211)
               


               
               1396-1620, gnl|bosTau2|chr3 (37353899-37354130)
               

               
               1396-1620, gnl|Hg17|chr1 (95373538-95373764)
               

               
               1396-1620, gnl|Mm7|chr3 (120975088-120974872)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1005, gnl|bosTau2|chr3 (37352289-37353317)
               

               
               1-1005, gnl|Hg17|chr1 (95372115-95373152)
               

               
               1-1005, gnl|Mm7|chr3 (120976480-120975476)
               


               
               1019-1294, gnl|bosTau2|chr3 (37353306-37353594)
               

               
               1019-1294, gnl|Hg17|chr1 (95373140-95373414)
               

               
               1019-1294, gnl|Mm7|chr3 (120975486-120975211)
               


               
               1396-1620, gnl|bosTau2|chr3 (37353899-37354130)
               

               
               1396-1620, gnl|Hg17|chr1 (95373538-95373764)
               

               
               1396-1620, gnl|Mm7|chr3 (120975088-120974872)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               isp (0.150376)
               

               
               ute (0.132784)
               

               
               ova (0.129132)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)
               

               
               ute (0.132784)
               

               
               ova (0.129132)

	1-1005, gnl\|bosTau2\|chr3 (37352289-37353317)
	1-1005, gnl\|Hg17\|chr1 (95372115-95373152)
	1-1005, gnl\|Mm7\|chr3 (120976480-120975476)

	1019-1294, gnl\|bosTau2\|chr3 (37353306-37353594)
	1019-1294, gnl\|Hg17\|chr1 (95373140-95373414)
	1019-1294, gnl\|Mm7\|chr3 (120975486-120975211)

	1396-1620, gnl\|bosTau2\|chr3 (37353899-37354130)
	1396-1620, gnl\|Hg17\|chr1 (95373538-95373764)
	1396-1620, gnl\|Mm7\|chr3 (120975088-120974872)