Non-Coding RNA Search

Ss1.1-Ova1-OVRM10019C05.5

Sequence:


               
               AGACGCGCGGCCGCGCACTCGGCGCCGCGGCGGAGGCTGCTTCTGAGCTGCACTGGCTGG
GCGCGCTGGGAGGCGGCGATCGCAGCTGGGCCGGGACTTCCTTCCTCCACCGCTGGACAA
CAAAACAAGCAGGCAGCAGGCACCAAGCTCTTGGCCGCTGGCTGGGCGGGAGGCGCAGCA
ATGGGGTCGGTGCTGAGCAGCGACAACGGAAAATCCGCGCCCGCCTCGGCCACCCCACGG
GCCCTGGAGCGCAGGGGGGACCCCGCGCTGCCCGTCACGTCCTTCGACTGCTCCGTATGC
CTCGAAGTGTTGCACCATCCCGTCCGGACCCGCTGTGGCCACGTATTCTGCCGTTCCTGC
ATTGCTACCAGTCTAAAGAACAATAAGTGGACCTGTCCTTATTGCCGGGCATATCTTCCT
TCAGAAGGCGTTCCAGCAACTGATGTAGCCAAGAGAACGAAATCCGAGTTCCAGAATTAC
ACCGAGTGTGACACTCTGGTACGTGACCCTGCTTTTGTTCATGTTACTGGCTTAGACCTT
TGAGAAAATGGTGATGGCAGCCACTCCTTTCACCTATGCCTTTGACCTCATGCTACCCTG
ACTTTCCAGAGTTTAATATCTCAGCCTCTTCTCTTCCTTTCTCCCAATTTCATATGTATG
GGCTGCAGGACTACAGTCACATGACACCTGATTTTTCAGACACACACTTTTGCCTACCAC
CTCCATTTCCTCTCTCCCCATTACTCCATGACCCTCTATTACCTGGCCTCCATTCCTGCC
ATGCAATTGCAGCCCACCCAGCGAATAGCTTTATTTGCAAATCCAGTGGCACATTTCCAC
ATATGTCATTCTGGGCTCTGCAGTATTTATCTCTGTTAACCACTTCCTCCTTATTGCAGT
TTTTCTCCCTTGATGCGACACTAGCCTGGTTAGATCATGTGAGCTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACGCGCGGCCGCGCACTCGGCGCCGCGGCGGAGGCTGCTTCTGAGCTGCACTGGCTGG
GCGCGCTGGGAGGCGGCGATCGCAGCTGGGCCGGGACTTCCTTCCTCCACCGCTGGACAA
CAAAACAAGCAGGCAGCAGGCACCAAGCTCTTGGCCGCTGGCTGGGCGGGAGGCGCAGCA
ATGGGGTCGGTGCTGAGCAGCGACAACGGAAAATCCGCGCCCGCCTCGGCCACCCCACGG
GCCCTGGAGCGCAGGGGGGACCCCGCGCTGCCCGTCACGTCCTTCGACTGCTCCGTATGC
CTCGAAGTGTTGCACCATCCCGTCCGGACCCGCTGTGGCCACGTATTCTGCCGTTCCTGC
ATTGCTACCAGTCTAAAGAACAATAAGTGGACCTGTCCTTATTGCCGGGCATATCTTCCT
TCAGAAGGCGTTCCAGCAACTGATGTAGCCAAGAGAACGAAATCCGAGTTCCAGAATTAC
ACCGAGTGTGACACTCTGGTACGTGACCCTGCTTTTGTTCATGTTACTGGCTTAGACCTT
TGAGAAAATGGTGATGGCAGCCACTCCTTTCACCTATGCCTTTGACCTCATGCTACCCTG
ACTTTCCAGAGTTTAATATCTCAGCCTCTTCTCTTCCTTTCTCCCAATTTCATATGTATG
GGCTGCAGGACTACAGTCACATGACACCTGATTTTTCAGACACACACTTTTGCCTACCAC
CTCCATTTCCTCTCTCCCCATTACTCCATGACCCTCTATTACCTGGCCTCCATTCCTGCC
ATGCAATTGCAGCCCACCCAGCGAATAGCTTTATTTGCAAATCCAGTGGCACATTTCCAC
ATATGTCATTCTGGGCTCTGCAGTATTTATCTCTGTTAACCACTTCCTCCTTATTGCAGT
TTTTCTCCCTTGATGCGACACTAGCCTGGTTAGATCATGTGAGCTCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               226-344, - strand, RNAz p=0.545426

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               226-344, - strand, RNAz p=0.545426

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               18-344, gnl|bosTau2|chr24 (19788885-19788558)
               

               
               18-344, gnl|Hg17|chr18 (27852662-27852988)
               

               
               18-344, gnl|Mm7|chr18 (21332218-21332518)
               


               
               345-948, gnl|bosTau2|chr24 (19768716-19768114)
               

               
               345-948, gnl|Hg17|chr18 (27871077-27872630)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-344, gnl|bosTau2|chr24 (19788885-19788558)
               

               
               18-344, gnl|Hg17|chr18 (27852662-27852988)
               

               
               18-344, gnl|Mm7|chr18 (21332218-21332518)
               


               
               345-948, gnl|bosTau2|chr24 (19768716-19768114)
               

               
               345-948, gnl|Hg17|chr18 (27871077-27872630)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fat (0.147427)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)

	18-344, gnl\|bosTau2\|chr24 (19788885-19788558)
	18-344, gnl\|Hg17\|chr18 (27852662-27852988)
	18-344, gnl\|Mm7\|chr18 (21332218-21332518)

	345-948, gnl\|bosTau2\|chr24 (19768716-19768114)
	345-948, gnl\|Hg17\|chr18 (27871077-27872630)