Non-Coding RNA Search

Ss1.1-Ova1-OVRM10019H06.5

Sequence:


               
               GGCAGGAGCCGGTGCTTGAGCACGAGCGACGGTGCTGGCGGAGACGCCGGCTGCTCCTCC
CCTCCCCGCCGCTTTTCCTAAAAGGATTCCAATGCACCTTAGAAGTGCTTGAGGAAGAAT
GATAAAGATAGGCATGAAGCCTCCGTCTCAGAGCTGCATGTGTAGTTACTGTTGAAGCAA
TGCCTACCTAATTTGACAGTCTTGGTGTGTTTAAATTTTTTTGAGTTTGCAAATAATCAT
ATTAAATCTACTGATGGAGCCTTCGGGCAGTGAACAGTTATTTGAGGACCCTGATCCTGG
AGGCAAATCCCAAGATGCAGAGGCCAGAAAGCAGACAGAATCAGAACAAAAGTTGTCTAA
AATGACCCACAATGCTTTGGAGAACATTAATGTGATTGGCCAAGGCTTGAAGCATCTCTT
CCAGCACCAGCGCAGGAGGTCATCAGTGTCTCCACACGATGTACAGCAAATTCAGGCAGA
TCCAGAACCTGAAATAGATCTGGAAGGCCAGAACGCGTGTGCTGAGATTGATGGTGTCCC
CACCCACCCCACAGCTTTGAATCGTGTCCTGCAGCAGATCCGAGTGCCACCCAAGATGAA
GAGAGGGACAAGCTTGCATAGTAGGCGGGGCAAGCCAGAGGCCCCAAAGGGAAGTCCCCA
AATCAACAGGAAATCTGGTCAGGAGATGGCAACTGTTATGCAGTCCGGCCGACCCAGGTC
TTCATCCACTACTGATGCTCCTACCAGCTCCACTGTGATGGAGATAGCTTGTGCTGCTGC
TGCTGCTGCGTGTCTGCCAGGAGATGAGGCACCTGCAGAGCGGATCGAGCGGTTGGAGGT
AAGCAGCCTCGCCCAGACTTCCAGTGCAGTGGCCTCCAGCACTGATGGCAGCCTCCACAC
AGACTCTGTGGATGGAACACCAGACCCTCAGCGCACAAAGGCTGCTATTGCTCACTTGCA
GCAGAAGATCCTGAAGCTAACAGAACAAATCAAGATTGCACAGACAGCCCGGGACGACAA
CGTTGCTGAGTATCTGAAGCTTGCCAACAGTGCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGGAGCCGGTGCTTGAGCACGAGCGACGGTGCTGGCGGAGACGCCGGCTGCTCCTCC
CCTCCCCGCCGCTTTTCCTAAAAGGATTCCAATGCACCTTAGAAGTGCTTGAGGAAGAAT
GATAAAGATAGGCATGAAGCCTCCGTCTCAGAGCTGCATGTGTAGTTACTGTTGAAGCAA
TGCCTACCTAATTTGACAGTCTTGGTGTGTTTAAATTTTTTTGAGTTTGCAAATAATCAT
ATTAAATCTACTGATGGAGCCTTCGGGCAGTGAACAGTTATTTGAGGACCCTGATCCTGG
AGGCAAATCCCAAGATGCAGAGGCCAGAAAGCAGACAGAATCAGAACAAAAGTTGTCTAA
AATGACCCACAATGCTTTGGAGAACATTAATGTGATTGGCCAAGGCTTGAAGCATCTCTT
CCAGCACCAGCGCAGGAGGTCATCAGTGTCTCCACACGATGTACAGCAAATTCAGGCAGA
TCCAGAACCTGAAATAGATCTGGAAGGCCAGAACGCGTGTGCTGAGATTGATGGTGTCCC
CACCCACCCCACAGCTTTGAATCGTGTCCTGCAGCAGATCCGAGTGCCACCCAAGATGAA
GAGAGGGACAAGCTTGCATAGTAGGCGGGGCAAGCCAGAGGCCCCAAAGGGAAGTCCCCA
AATCAACAGGAAATCTGGTCAGGAGATGGCAACTGTTATGCAGTCCGGCCGACCCAGGTC
TTCATCCACTACTGATGCTCCTACCAGCTCCACTGTGATGGAGATAGCTTGTGCTGCTGC
TGCTGCTGCGTGTCTGCCAGGAGATGAGGCACCTGCAGAGCGGATCGAGCGGTTGGAGGT
AAGCAGCCTCGCCCAGACTTCCAGTGCAGTGGCCTCCAGCACTGATGGCAGCCTCCACAC
AGACTCTGTGGATGGAACACCAGACCCTCAGCGCACAAAGGCTGCTATTGCTCACTTGCA
GCAGAAGATCCTGAAGCTAACAGAACAAATCAAGATTGCACAGACAGCCCGGGACGACAA
CGTTGCTGAGTATCTGAAGCTTGCCAACAGTGCAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50754644|ref|XP_414457.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50754644|ref|XP_414457.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               241-360, - strand, RNAz p=0.613975
               

               
               396-720, - strand, RNAz p=0.997959
               

               
               441-560, - strand, RNAz p=0.985245

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               241-360, - strand, RNAz p=0.613975
               

               
               396-720, - strand, RNAz p=0.997959
               

               
               441-560, - strand, RNAz p=0.985245

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               126-823, gnl|bosTau2|chr22 (45523578-45524280)
               

               
               126-823, gnl|Hg17|chr3 (131030051-131029344)
               

               
               126-823, gnl|Mm7|chr6 (116160132-116159440)
               


               
               319-782, gnl|bosTau2|chr14 (43278269-43278723)
               

               
               319-782, gnl|Hg17|chr2 (68765850-68766318)
               

               
               319-782, gnl|Mm7|chr6 (116159894-116159475)
               


               
               827-1056, gnl|bosTau2|chr14 (43278736-43278951)
               

               
               827-1056, gnl|Hg17|chr2 (68766357-68766585)
               

               
               827-1056, gnl|Mm7|chr6 (116069472-116069246)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               126-823, gnl|bosTau2|chr22 (45523578-45524280)
               

               
               126-823, gnl|Hg17|chr3 (131030051-131029344)
               

               
               126-823, gnl|Mm7|chr6 (116160132-116159440)
               


               
               319-782, gnl|bosTau2|chr14 (43278269-43278723)
               

               
               319-782, gnl|Hg17|chr2 (68765850-68766318)
               

               
               319-782, gnl|Mm7|chr6 (116159894-116159475)
               


               
               827-1056, gnl|bosTau2|chr14 (43278736-43278951)
               

               
               827-1056, gnl|Hg17|chr2 (68766357-68766585)
               

               
               827-1056, gnl|Mm7|chr6 (116069472-116069246)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	241-360, - strand, RNAz p=0.613975
	396-720, - strand, RNAz p=0.997959
	441-560, - strand, RNAz p=0.985245

	126-823, gnl\|bosTau2\|chr22 (45523578-45524280)
	126-823, gnl\|Hg17\|chr3 (131030051-131029344)
	126-823, gnl\|Mm7\|chr6 (116160132-116159440)

	319-782, gnl\|bosTau2\|chr14 (43278269-43278723)
	319-782, gnl\|Hg17\|chr2 (68765850-68766318)
	319-782, gnl\|Mm7\|chr6 (116159894-116159475)

	827-1056, gnl\|bosTau2\|chr14 (43278736-43278951)
	827-1056, gnl\|Hg17\|chr2 (68766357-68766585)
	827-1056, gnl\|Mm7\|chr6 (116069472-116069246)