Ss1.1-Ova1-OVRM10020C03.5
|
AGCCAGAGGCCGCCGTCGCCAACCGAGTGTTCTGGTTCCACAGCCAGAGGAGGCGTCTCC
GGAGCTCGCAGTTGACCCAGGCTGTGCCAGCCGCTCAGGCCGCCTCAGCCCTCCTCGGTG
CTGCCCGGTCTTTTCGCCCGGCCCCGGCGTCGGCCCCCGACCCGGCGGAAATCATGAATC
AGGCAGATAAAAATCAACAAGAAATCCCATCATACCTTAGTGATGAACCACCAGAAGGTT
CAATGAAAGATCACCCACAGCAGCAACCAGGCATGCTGTCTCGTGTGACTGGGGGTATCT
TCAGTGTTACAAAGGGAGCTGTTGGTGCCACCATTGGTGGTGTGGCTTGGATTGGTGGAA
AGAGTCTGGAGGTGACCAAAACAGCTGTTACAACTGTGCCTTCCATGGGAATAGGGCTCG
TGAAAGGGGGTGTGTCTGCTGTGGCTGGAGGTGTTACAGCTGTTGGGTCTGCTGTTGTAA
ACAAAGTGCCCTTAACAGGAAAGAAGAAAGACAAATCTGACTAAAATATGGAGATATACT
TGCTCTCCACAGCATTATGATGCCAGTGGCATTGAATTGCTAAATTATGGACTACAACCA
AGTCACCTGTTTTGGACGTTTATCTTCTAACTGCTGTGTTGAAAGTATTGATGACTGACT
GGCTTTTGTCGAAAAAGAAGAGACCAATACTAGCACAGTGTATGAAGGTTTCTCACACTC
AAATTCCAGCTTTTTATCTGGTAAAATGTTACAGTTATTCAGTTGTAACTGAAAATATGG
TATATTTGAATATTTACGACATGTCTTTCAGTTTAACTAAAAATGTGAAAGTTGAATTTA
GTGAATGATCTTTACAGTTCCATATGTATAATGTGCCAGGTAACTCATTTGCCCCTTAAG
AAGGGAACCTTGAACTACATAAACTGTACCTTTGATGTGCCTAATAGTTTCAGATGTCTT
AGTTTTTTAAATAACCATAGTTGATTAGACCAAGAGGCATTCTTTTCTTATTTAAGATGG
TAAAAGTAGCAGGAATTAGAACAGTTTAAAAGAGAGATTCATGGTTTTATGAGTATTAAC
CATCTTTTGTTAGATATGCATTATATTAATTTAATCATTGATGCCTTACAAAAGAAAACA
TCATTTCTAATACCCTAAATATGTGCAGTTGTCAGGATTCTTTCAAAAGTTGTTTGTGAA
ATTATTTTTCCCTCAAGAATCTCAGGAGTAGTGGGTTAAAGGAATCTCTTGCTCTTAGCA
GATAAGATAGTGCTTGTTAAGTGTCAGTAGTTGTAACCAAATTGTATGCTTCAGCTTTGG
TTCATGCTCCATCAGTAATAAACCTCACAGTGCCTAAGGAACATTTCTTTGCTGGTCAGA
AGCTATGTTGGAACAGTTTCATGGTGAGGAGGAAACATAATTTTAAGTTCTTAAAAATTA
CCTGTAGCATCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGCCAGAGGCCGCCGTCGCCAACCGAGTGTTCTGGTTCCACAGCCAGAGGAGGCGTCTCC
GGAGCTCGCAGTTGACCCAGGCTGTGCCAGCCGCTCAGGCCGCCTCAGCCCTCCTCGGTG
CTGCCCGGTCTTTTCGCCCGGCCCCGGCGTCGGCCCCCGACCCGGCGGAAATCATGAATC
AGGCAGATAAAAATCAACAAGAAATCCCATCATACCTTAGTGATGAACCACCAGAAGGTT
CAATGAAAGATCACCCACAGCAGCAACCAGGCATGCTGTCTCGTGTGACTGGGGGTATCT
TCAGTGTTACAAAGGGAGCTGTTGGTGCCACCATTGGTGGTGTGGCTTGGATTGGTGGAA
AGAGTCTGGAGGTGACCAAAACAGCTGTTACAACTGTGCCTTCCATGGGAATAGGGCTCG
TGAAAGGGGGTGTGTCTGCTGTGGCTGGAGGTGTTACAGCTGTTGGGTCTGCTGTTGTAA
ACAAAGTGCCCTTAACAGGAAAGAAGAAAGACAAATCTGACTAAAATATGGAGATATACT
TGCTCTCCACAGCATTATGATGCCAGTGGCATTGAATTGCTAAATTATGGACTACAACCA
AGTCACCTGTTTTGGACGTTTATCTTCTAACTGCTGTGTTGAAAGTATTGATGACTGACT
GGCTTTTGTCGAAAAAGAAGAGACCAATACTAGCACAGTGTATGAAGGTTTCTCACACTC
AAATTCCAGCTTTTTATCTGGTAAAATGTTACAGTTATTCAGTTGTAACTGAAAATATGG
TATATTTGAATATTTACGACATGTCTTTCAGTTTAACTAAAAATGTGAAAGTTGAATTTA
GTGAATGATCTTTACAGTTCCATATGTATAATGTGCCAGGTAACTCATTTGCCCCTTAAG
AAGGGAACCTTGAACTACATAAACTGTACCTTTGATGTGCCTAATAGTTTCAGATGTCTT
AGTTTTTTAAATAACCATAGTTGATTAGACCAAGAGGCATTCTTTTCTTATTTAAGATGG
TAAAAGTAGCAGGAATTAGAACAGTTTAAAAGAGAGATTCATGGTTTTATGAGTATTAAC
CATCTTTTGTTAGATATGCATTATATTAATTTAATCATTGATGCCTTACAAAAGAAAACA
TCATTTCTAATACCCTAAATATGTGCAGTTGTCAGGATTCTTTCAAAAGTTGTTTGTGAA
ATTATTTTTCCCTCAAGAATCTCAGGAGTAGTGGGTTAAAGGAATCTCTTGCTCTTAGCA
GATAAGATAGTGCTTGTTAAGTGTCAGTAGTTGTAACCAAATTGTATGCTTCAGCTTTGG
TTCATGCTCCATCAGTAATAAACCTCACAGTGCCTAAGGAACATTTCTTTGCTGGTCAGA
AGCTATGTTGGAACAGTTTCATGGTGAGGAGGAAACATAATTTTAAGTTCTTAAAAATTA
CCTGTAGCATCC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
1-171, gnl|bosTau2|chr5 (40875228-40875059) |
|
1-171, gnl|canFam2|chr10 (34937406-34937280) |
|
1-171, gnl|echTel1|scaffold_109427 (561-463) |
|
1-171, gnl|hg17|chr12 (105852118-105852253) |
|
1-171, gnl|Hg17|chr12 (105852120-105852314) |
|
1-171, gnl|mm7|chr10 (84644157-84644312) |
|
1-171, gnl|Mm7|chr10 (84644159-84644365) |
|
1-171, gnl|monDom2|scaffold_34 (6513845-6513685) |
|
1-171, gnl|oryCun1|scaffold_193877 (3604-3466) |
|
1-171, gnl|panTro1|chr10_random (1995321-1995186) |
|
1-171, gnl|rheMac2|chr11 (108027569-108027702) |
|
1-171, gnl|rn3|chr7 (20763817-20763666) |
| |
|
236-1452, gnl|bosTau2|chr5 (40859029-40857787) |
|
236-1452, gnl|Hg17|chr12 (105867348-105868585) |
|
236-1452, gnl|Mm7|chr10 (84655770-84656968) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-171, gnl|bosTau2|chr5 (40875228-40875059) |
|
1-171, gnl|canFam2|chr10 (34937406-34937280) |
|
1-171, gnl|echTel1|scaffold_109427 (561-463) |
|
1-171, gnl|hg17|chr12 (105852118-105852253) |
|
1-171, gnl|Hg17|chr12 (105852120-105852314) |
|
1-171, gnl|mm7|chr10 (84644157-84644312) |
|
1-171, gnl|Mm7|chr10 (84644159-84644365) |
|
1-171, gnl|monDom2|scaffold_34 (6513845-6513685) |
|
1-171, gnl|oryCun1|scaffold_193877 (3604-3466) |
|
1-171, gnl|panTro1|chr10_random (1995321-1995186) |
|
1-171, gnl|rheMac2|chr11 (108027569-108027702) |
|
1-171, gnl|rn3|chr7 (20763817-20763666) |
| |
|
236-1452, gnl|bosTau2|chr5 (40859029-40857787) |
|
236-1452, gnl|Hg17|chr12 (105867348-105868585) |
|
236-1452, gnl|Mm7|chr10 (84655770-84656968) |
|
cte (0.29274) |
|
liv (0.292569) |
|
cty (0.20816) |
|
tes (0.207814) |
|
fty (0.17584) |
|
rec (0.17307) |
|
nco (0.161734) |
|
tbr (0.154178) |
|
bfe (0.149858) |
|
lin (0.145603) |
|
csk (0.140746) |
|
pla (0.133672) |
|
kid (0.129735) |
|
bla (0.124347) |
|
tra (0.123092) |
|
eru (0.120048) |
|
cbl (0.114797) |
|
jca (0.11396) |
|
cte (0.29274) |
|
liv (0.292569) |
|
cty (0.20816) |
|
tes (0.207814) |
|
fty (0.17584) |
|
rec (0.17307) |
|
nco (0.161734) |
|
tbr (0.154178) |
|
bfe (0.149858) |
|
lin (0.145603) |
|
csk (0.140746) |
|
pla (0.133672) |
|
kid (0.129735) |
|
bla (0.124347) |
|
tra (0.123092) |
|
eru (0.120048) |
|
cbl (0.114797) |
|
jca (0.11396) |
