Ss1.1-Ova1-OVRM10020C10.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CTCTTGGGTTACGTCCGTCCGCGGGCAGGGCCGCCACCTCCACCTGCGCCGCTGCTATGG GAGTCCCGGCTTTCTTTCGCTGGCTCAGCCGCAAGTACCCGTCCATCATTGTCAATTGCG TGGAAGAGAAGCCAAAAGAATGCAATGGCGTAAAGATTCCTGTCGATGCCAGTAAGCCTA ATCCAAATGATGTGGAGTTTGATAATCTGTATTTGGACATGAATGGAATCATCCATCCCT GTACTCACCCTGAAGACAAACCAGCGCCCAAAAACGAGGATGAAATGATGGTTGCAATTT TTGAATACATTGACCGACTTTTCAATATTGTGAGACCAAGACGACTTCTCTACATGGCAA TAGATGGAGTGGCGCCGCGCGCTAAAATGAACCAGCAGCGTTCAAGGAGGTTCAGAGCAT CCAAAGAAGGAATGGAAGCAGCAGTAGAGAAGCAGCGAGTCAGGGAAGAAATACTGGCAA AAGGTGGCTTCCTTCCTCCAGAAGAAATAAAAGAGAGATTTGACAGCAACTGTATTACAC CAGGAACTGAGTTCATGGACAATCTTGCTAAATGCCTTCGCTATTACATAGCTGATCGTT TAAATAATGACCCCGGGTGGAAAAATCTGACAGTTATTTTGTCTGATGCTAGTGCTCCTG GTGAAGGGGAACATAAAATCATGGATTACATTAGAAGACAGAGAGCCCAGCCTAACCATG ACCCAAACACTCATCATTGCTTGTGTGGAGCAGATGCTGATCTCATTATGCTCGGCCTTG CTACACACGAACCCAACTTTACCATTATCAGAGAAGAATTCAAACCAAACAAACCCAAAC CCTGTGGTCTTTGTAATCAATTTGGACATGAGGTCAAGGACTGTGAAGGTTTGCCAAGAG AAAAGAAGGGAAAGCACGACGAGCTGGCAGACAGCCTTCCCAGTGCAGAGGGAGAGTTCA TCTTCCTACGTCTCAGTGTCCTTCGTGAGTATTTGGAAAGAGAGCTCACCATGGCCAGCC TGCCATTCACGTTTGATGTGGAGAGGAGCATTGACGACTGGGTCTTCATGTGCTTCTTTG TGGGAAATGACTTCCTTCCTCACCTGCCATCCTTAGAGATTAGGGAAGGTGCAATTGACC GTTTGGTTAACATATACAAAAATGTGGTACACAAAACTGGGGGTTACCTTACAGAAAGTG GTTATGTCAATCTGCAGAGAGTACAGATGATCATGTTAGCAGTTGGTGAAGTTGAGGATA GCATTTTTAAAAAGAGAAAGGATGATGAGGACAGTTTTAGAAGACGACAGAAAGAAAAAA GAAAGAGAATGAAGAGAGATCAACCGTCTTTCTCTCCTGGTGGAATATTAACTCCTCACG CCCTGGGCTCAAGAAATTCACCAGGATCTCAAGTAGCCAGTAATCCGAGACAAGCAGCCT ATGAAATGAGGATGCAGAATAACTCTAGTCCTTCAG |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CTCTTGGGTTACGTCCGTCCGCGGGCAGGGCCGCCACCTCCACCTGCGCCGCTGCTATGG GAGTCCCGGCTTTCTTTCGCTGGCTCAGCCGCAAGTACCCGTCCATCATTGTCAATTGCG TGGAAGAGAAGCCAAAAGAATGCAATGGCGTAAAGATTCCTGTCGATGCCAGTAAGCCTA ATCCAAATGATGTGGAGTTTGATAATCTGTATTTGGACATGAATGGAATCATCCATCCCT GTACTCACCCTGAAGACAAACCAGCGCCCAAAAACGAGGATGAAATGATGGTTGCAATTT TTGAATACATTGACCGACTTTTCAATATTGTGAGACCAAGACGACTTCTCTACATGGCAA TAGATGGAGTGGCGCCGCGCGCTAAAATGAACCAGCAGCGTTCAAGGAGGTTCAGAGCAT CCAAAGAAGGAATGGAAGCAGCAGTAGAGAAGCAGCGAGTCAGGGAAGAAATACTGGCAA AAGGTGGCTTCCTTCCTCCAGAAGAAATAAAAGAGAGATTTGACAGCAACTGTATTACAC CAGGAACTGAGTTCATGGACAATCTTGCTAAATGCCTTCGCTATTACATAGCTGATCGTT TAAATAATGACCCCGGGTGGAAAAATCTGACAGTTATTTTGTCTGATGCTAGTGCTCCTG GTGAAGGGGAACATAAAATCATGGATTACATTAGAAGACAGAGAGCCCAGCCTAACCATG ACCCAAACACTCATCATTGCTTGTGTGGAGCAGATGCTGATCTCATTATGCTCGGCCTTG CTACACACGAACCCAACTTTACCATTATCAGAGAAGAATTCAAACCAAACAAACCCAAAC CCTGTGGTCTTTGTAATCAATTTGGACATGAGGTCAAGGACTGTGAAGGTTTGCCAAGAG AAAAGAAGGGAAAGCACGACGAGCTGGCAGACAGCCTTCCCAGTGCAGAGGGAGAGTTCA TCTTCCTACGTCTCAGTGTCCTTCGTGAGTATTTGGAAAGAGAGCTCACCATGGCCAGCC TGCCATTCACGTTTGATGTGGAGAGGAGCATTGACGACTGGGTCTTCATGTGCTTCTTTG TGGGAAATGACTTCCTTCCTCACCTGCCATCCTTAGAGATTAGGGAAGGTGCAATTGACC GTTTGGTTAACATATACAAAAATGTGGTACACAAAACTGGGGGTTACCTTACAGAAAGTG GTTATGTCAATCTGCAGAGAGTACAGATGATCATGTTAGCAGTTGGTGAAGTTGAGGATA GCATTTTTAAAAAGAGAAAGGATGATGAGGACAGTTTTAGAAGACGACAGAAAGAAAAAA GAAAGAGAATGAAGAGAGATCAACCGTCTTTCTCTCCTGGTGGAATATTAACTCCTCACG CCCTGGGCTCAAGAAATTCACCAGGATCTCAAGTAGCCAGTAATCCGAGACAAGCAGCCT ATGAAATGAGGATGCAGAATAACTCTAGTCCTTCAG |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
144-259, + strand, RNAz p=0.684638 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
144-259, + strand, RNAz p=0.684638 |
Aligned organism(s): 93 entry(ies) | More info |
Aligned organism(s): 93 entry(ies) | Help | Less info |
130-259, gnl|bosTau2|chr13 (25767803-25767674) | |
130-259, gnl|canFam2|chr24 (5105870-5105747) | |
130-259, gnl|danRer3|chrUn (96690135-96690019) | |
130-259, gnl|dasNov1|scaffold_7659 (49435-49312) | |
130-259, gnl|echTel1|scaffold_289788 (43544-43421) | |
130-259, gnl|fr1|chrUn (246767495-246767618) | |
130-259, gnl|galGal2|chr3 (3457492-3457368) | |
130-259, gnl|hg17|chr20 (21254909-21255032) | |
130-259, gnl|Hg17|chr20 (21254915-21255044) | |
130-259, gnl|loxAfr1|scaffold_51451 (9158-9035) | |
130-259, gnl|mm7|chr2 (146765357-146765480) | |
130-259, gnl|Mm7|chr2 (146765363-146765492) | |
130-259, gnl|monDom2|scaffold_1 (57086233-57086356) | |
130-259, gnl|oryCun1|scaffold_135072 (1564-1687) | |
130-259, gnl|panTro1|chr21 (21179926-21180049) | |
130-259, gnl|rheMac2|chr10 (54615777-54615900) | |
130-259, gnl|rn3|chr3 (135571598-135571721) | |
130-259, gnl|tetNig1|chr14 (9513357-9513480) | |
130-259, gnl|xenTro1|scaffold_352 (398058-397935) | |
260-372, gnl|bosTau2|chr13 (25767591-25767479) | |
260-372, gnl|canFam2|chr24 (5105683-5105509) | |
260-372, gnl|danRer3|chr20 (54494037-54493883) | |
260-372, gnl|dasNov1|scaffold_7659 (49246-49072) | |
260-372, gnl|echTel1|scaffold_289788 (43360-43186) | |
260-372, gnl|fr1|chrUn (246768137-246768287) | |
260-372, gnl|galGal2|chr3 (3457277-3457104) | |
260-372, gnl|hg17|chr20 (21255097-21255266) | |
260-372, gnl|Hg17|chr20 (21255128-21255240) | |
260-372, gnl|loxAfr1|scaffold_51451 (8970-8795) | |
260-372, gnl|mm7|chr2 (146765541-146765715) | |
260-372, gnl|Mm7|chr2 (146765572-146765684) | |
260-372, gnl|monDom2|scaffold_1 (57089604-57089770) | |
260-372, gnl|oryCun1|scaffold_135072 (1752-1924) | |
260-372, gnl|panTro1|chr21 (21180114-21180283) | |
260-372, gnl|rheMac2|chr10 (54615965-54616139) | |
260-372, gnl|rn3|chr3 (135571783-135571959) | |
260-372, gnl|tetNig1|chr14 (9513741-9513923) | |
260-372, gnl|xenTro1|scaffold_352 (397874-397717) | |
737-914, gnl|bosTau2|chr13 (25762593-25762416) | |
737-914, gnl|Hg17|chr20 (21260900-21261078) | |
737-914, gnl|Mm7|chr2 (146768937-146769107) | |
988-1124, gnl|bosTau2|chr13 (25761087-25760951) | |
988-1124, gnl|canFam2|chr24 (5097696-5097493) | |
988-1124, gnl|danRer3|chrUn (96669809-96669616) | |
988-1124, gnl|dasNov1|scaffold_7659 (42717-42513) | |
988-1124, gnl|echTel1|scaffold_299125 (5543-5745) | |
988-1124, gnl|fr1|chrUn (246769936-246770183) | |
988-1124, gnl|galGal2|chr3 (3452491-3452282) | |
988-1124, gnl|hg17|chr20 (21262284-21262485) | |
988-1124, gnl|Hg17|chr20 (21262340-21262476) | |
988-1124, gnl|loxAfr1|scaffold_51451 (2671-2469) | |
988-1124, gnl|mm7|chr2 (146770297-146770495) | |
988-1124, gnl|Mm7|chr2 (146770350-146770486) | |
988-1124, gnl|monDom2|scaffold_1 (57100708-57100915) | |
988-1124, gnl|oryCun1|scaffold_135072 (9526-9727) | |
988-1124, gnl|panTro1|chr21 (21187367-21187568) | |
988-1124, gnl|rheMac2|chr10 (54623593-54623793) | |
988-1124, gnl|rn3|chr3 (135576717-135576915) | |
988-1124, gnl|tetNig1|chr14 (9515800-9515979) | |
988-1124, gnl|xenTro1|scaffold_352 (390549-390359) | |
1181-1298, gnl|bosTau2|chr13 (25760712-25760594) | |
1181-1298, gnl|canFam2|chr24 (5097276-5097151) | |
1181-1298, gnl|danRer3|chrUn (96667677-96667552) | |
1181-1298, gnl|echTel1|scaffold_299125 (5962-6088) | |
1181-1298, gnl|fr1|chrUn (246770365-246770504) | |
1181-1298, gnl|galGal2|chr3 (3452071-3451946) | |
1181-1298, gnl|hg17|chr20 (21262702-21262827) | |
1181-1298, gnl|Hg17|chr20 (21262715-21262833) | |
1181-1298, gnl|loxAfr1|scaffold_51451 (2252-2127) | |
1181-1298, gnl|mm7|chr2 (146770712-146770837) | |
1181-1298, gnl|Mm7|chr2 (146770725-146770838) | |
1181-1298, gnl|monDom2|scaffold_1 (57101122-57101247) | |
1181-1298, gnl|oryCun1|scaffold_135072 (9928-10053) | |
1181-1298, gnl|panTro1|chr21 (21187784-21187909) | |
1181-1298, gnl|rheMac2|chr10 (54624017-54624142) | |
1181-1298, gnl|rn3|chr3 (135577131-135577256) | |
1181-1298, gnl|tetNig1|chr14 (9516159-9516284) | |
1181-1298, gnl|xenTro1|scaffold_352 (389351-389227) | |
1333-1464, gnl|bosTau2|chr13 (25754493-25754362) | |
1333-1464, gnl|canFam2|chr24 (5091343-5091179) | |
1333-1464, gnl|danRer3|chrUn (96663557-96663401) | |
1333-1464, gnl|dasNov1|scaffold_57724 (9671-9507) | |
1333-1464, gnl|galGal2|chr3 (3450198-3450030) | |
1333-1464, gnl|hg17|chr20 (21269325-21269488) | |
1333-1464, gnl|Hg17|chr20 (21269357-21269488) | |
1333-1464, gnl|loxAfr1|scaffold_3255 (37059-37223) | |
1333-1464, gnl|mm7|chr2 (146777499-146777650) | |
1333-1464, gnl|Mm7|chr2 (146777519-146777650) | |
1333-1464, gnl|monDom2|scaffold_1 (57107982-57108158) | |
1333-1464, gnl|panTro1|chr21 (21194598-21194762) | |
1333-1464, gnl|rheMac2|chr10 (54630608-54630772) | |
1333-1464, gnl|rn3|chr3 (135583335-135583482) | |
1333-1464, gnl|xenTro1|scaffold_352 (386268-386102) |
Aligned organism(s): 93 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
130-259, gnl|bosTau2|chr13 (25767803-25767674) | |
130-259, gnl|canFam2|chr24 (5105870-5105747) | |
130-259, gnl|danRer3|chrUn (96690135-96690019) | |
130-259, gnl|dasNov1|scaffold_7659 (49435-49312) | |
130-259, gnl|echTel1|scaffold_289788 (43544-43421) | |
130-259, gnl|fr1|chrUn (246767495-246767618) | |
130-259, gnl|galGal2|chr3 (3457492-3457368) | |
130-259, gnl|hg17|chr20 (21254909-21255032) | |
130-259, gnl|Hg17|chr20 (21254915-21255044) | |
130-259, gnl|loxAfr1|scaffold_51451 (9158-9035) | |
130-259, gnl|mm7|chr2 (146765357-146765480) | |
130-259, gnl|Mm7|chr2 (146765363-146765492) | |
130-259, gnl|monDom2|scaffold_1 (57086233-57086356) | |
130-259, gnl|oryCun1|scaffold_135072 (1564-1687) | |
130-259, gnl|panTro1|chr21 (21179926-21180049) | |
130-259, gnl|rheMac2|chr10 (54615777-54615900) | |
130-259, gnl|rn3|chr3 (135571598-135571721) | |
130-259, gnl|tetNig1|chr14 (9513357-9513480) | |
130-259, gnl|xenTro1|scaffold_352 (398058-397935) | |
260-372, gnl|bosTau2|chr13 (25767591-25767479) | |
260-372, gnl|canFam2|chr24 (5105683-5105509) | |
260-372, gnl|danRer3|chr20 (54494037-54493883) | |
260-372, gnl|dasNov1|scaffold_7659 (49246-49072) | |
260-372, gnl|echTel1|scaffold_289788 (43360-43186) | |
260-372, gnl|fr1|chrUn (246768137-246768287) | |
260-372, gnl|galGal2|chr3 (3457277-3457104) | |
260-372, gnl|hg17|chr20 (21255097-21255266) | |
260-372, gnl|Hg17|chr20 (21255128-21255240) | |
260-372, gnl|loxAfr1|scaffold_51451 (8970-8795) | |
260-372, gnl|mm7|chr2 (146765541-146765715) | |
260-372, gnl|Mm7|chr2 (146765572-146765684) | |
260-372, gnl|monDom2|scaffold_1 (57089604-57089770) | |
260-372, gnl|oryCun1|scaffold_135072 (1752-1924) | |
260-372, gnl|panTro1|chr21 (21180114-21180283) | |
260-372, gnl|rheMac2|chr10 (54615965-54616139) | |
260-372, gnl|rn3|chr3 (135571783-135571959) | |
260-372, gnl|tetNig1|chr14 (9513741-9513923) | |
260-372, gnl|xenTro1|scaffold_352 (397874-397717) | |
737-914, gnl|bosTau2|chr13 (25762593-25762416) | |
737-914, gnl|Hg17|chr20 (21260900-21261078) | |
737-914, gnl|Mm7|chr2 (146768937-146769107) | |
988-1124, gnl|bosTau2|chr13 (25761087-25760951) | |
988-1124, gnl|canFam2|chr24 (5097696-5097493) | |
988-1124, gnl|danRer3|chrUn (96669809-96669616) | |
988-1124, gnl|dasNov1|scaffold_7659 (42717-42513) | |
988-1124, gnl|echTel1|scaffold_299125 (5543-5745) | |
988-1124, gnl|fr1|chrUn (246769936-246770183) | |
988-1124, gnl|galGal2|chr3 (3452491-3452282) | |
988-1124, gnl|hg17|chr20 (21262284-21262485) | |
988-1124, gnl|Hg17|chr20 (21262340-21262476) | |
988-1124, gnl|loxAfr1|scaffold_51451 (2671-2469) | |
988-1124, gnl|mm7|chr2 (146770297-146770495) | |
988-1124, gnl|Mm7|chr2 (146770350-146770486) | |
988-1124, gnl|monDom2|scaffold_1 (57100708-57100915) | |
988-1124, gnl|oryCun1|scaffold_135072 (9526-9727) | |
988-1124, gnl|panTro1|chr21 (21187367-21187568) | |
988-1124, gnl|rheMac2|chr10 (54623593-54623793) | |
988-1124, gnl|rn3|chr3 (135576717-135576915) | |
988-1124, gnl|tetNig1|chr14 (9515800-9515979) | |
988-1124, gnl|xenTro1|scaffold_352 (390549-390359) | |
1181-1298, gnl|bosTau2|chr13 (25760712-25760594) | |
1181-1298, gnl|canFam2|chr24 (5097276-5097151) | |
1181-1298, gnl|danRer3|chrUn (96667677-96667552) | |
1181-1298, gnl|echTel1|scaffold_299125 (5962-6088) | |
1181-1298, gnl|fr1|chrUn (246770365-246770504) | |
1181-1298, gnl|galGal2|chr3 (3452071-3451946) | |
1181-1298, gnl|hg17|chr20 (21262702-21262827) | |
1181-1298, gnl|Hg17|chr20 (21262715-21262833) | |
1181-1298, gnl|loxAfr1|scaffold_51451 (2252-2127) | |
1181-1298, gnl|mm7|chr2 (146770712-146770837) | |
1181-1298, gnl|Mm7|chr2 (146770725-146770838) | |
1181-1298, gnl|monDom2|scaffold_1 (57101122-57101247) | |
1181-1298, gnl|oryCun1|scaffold_135072 (9928-10053) | |
1181-1298, gnl|panTro1|chr21 (21187784-21187909) | |
1181-1298, gnl|rheMac2|chr10 (54624017-54624142) | |
1181-1298, gnl|rn3|chr3 (135577131-135577256) | |
1181-1298, gnl|tetNig1|chr14 (9516159-9516284) | |
1181-1298, gnl|xenTro1|scaffold_352 (389351-389227) | |
1333-1464, gnl|bosTau2|chr13 (25754493-25754362) | |
1333-1464, gnl|canFam2|chr24 (5091343-5091179) | |
1333-1464, gnl|danRer3|chrUn (96663557-96663401) | |
1333-1464, gnl|dasNov1|scaffold_57724 (9671-9507) | |
1333-1464, gnl|galGal2|chr3 (3450198-3450030) | |
1333-1464, gnl|hg17|chr20 (21269325-21269488) | |
1333-1464, gnl|Hg17|chr20 (21269357-21269488) | |
1333-1464, gnl|loxAfr1|scaffold_3255 (37059-37223) | |
1333-1464, gnl|mm7|chr2 (146777499-146777650) | |
1333-1464, gnl|Mm7|chr2 (146777519-146777650) | |
1333-1464, gnl|monDom2|scaffold_1 (57107982-57108158) | |
1333-1464, gnl|panTro1|chr21 (21194598-21194762) | |
1333-1464, gnl|rheMac2|chr10 (54630608-54630772) | |
1333-1464, gnl|rn3|chr3 (135583335-135583482) | |
1333-1464, gnl|xenTro1|scaffold_352 (386268-386102) |
Expressed library(ies): 1 entry(ies) | More info |
Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
jej (0.0989218) |