Non-Coding RNA Search

Ss1.1-Ova1-OVRM10021C03.5

Sequence:


               
               CACATCCAAGATGGCGCTCCCGGGAGCTGGGAGCGGGTGACCGGCGGCTGGGAAGCGGCC
TGGGCTGGCCCTGCGATTGCGGGGTCTTGGGGGCATCTGCTGGGTAGCACCCCCACCCCC
CCGGCCCACCTACAAGGCCTTCCCCGGGCTGGAGCAATGGCCGCCGAGAACAGCAAGCAG
TTTTGGAAGAGAAGCGCCAAGCTGCCGGGGAGCATCCAGCCTGTATACGGAGCACAACAC
CCTCCTCTGGACCCTCGGCTCACCAAGAACTTCATTAAAGAACGGTCAAAAGTCAACACG
GTTCCTCTGAAGAGTAAGAAGGCTTCCAGTTTTCATGAGTTTGCCCGGAACACCAGCGAT
GCTTGGGACATTGGCGATGATGAGGAAGAGGACTTTTCCTCCCCTGCTTTCCAAACTGTG
AACTCAAAAGTTGCTTTGGCAACTGCCGCCCAAGTGCTAGAAAACCACAGCAAGCTGAGG
GTGAAACCAGAACGGTCCCAGTCCACAACATCCGATGTTCCGGCCAGCTACAAGGTCATA
AAGTCCAGCAGTGATGCTCAGCTGTCCAGAAATTCCAGTGACACGTGCCTGAGGAACCCA
CTCCACAAACAGCAGTCACTCCCTCTCCGACCCATCATCCCCCTCGTTGCCCGGATCTCA
GACCAGAACGCCTCTGGGGCACCCCCGATGACTGTCCGGGAGAAAACCCGCCTAGAAAAA
TTCCGCCAGCTTCTCTCCAGCCACAACACTGACTTGGATGAGCTGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACATCCAAGATGGCGCTCCCGGGAGCTGGGAGCGGGTGACCGGCGGCTGGGAAGCGGCC
TGGGCTGGCCCTGCGATTGCGGGGTCTTGGGGGCATCTGCTGGGTAGCACCCCCACCCCC
CCGGCCCACCTACAAGGCCTTCCCCGGGCTGGAGCAATGGCCGCCGAGAACAGCAAGCAG
TTTTGGAAGAGAAGCGCCAAGCTGCCGGGGAGCATCCAGCCTGTATACGGAGCACAACAC
CCTCCTCTGGACCCTCGGCTCACCAAGAACTTCATTAAAGAACGGTCAAAAGTCAACACG
GTTCCTCTGAAGAGTAAGAAGGCTTCCAGTTTTCATGAGTTTGCCCGGAACACCAGCGAT
GCTTGGGACATTGGCGATGATGAGGAAGAGGACTTTTCCTCCCCTGCTTTCCAAACTGTG
AACTCAAAAGTTGCTTTGGCAACTGCCGCCCAAGTGCTAGAAAACCACAGCAAGCTGAGG
GTGAAACCAGAACGGTCCCAGTCCACAACATCCGATGTTCCGGCCAGCTACAAGGTCATA
AAGTCCAGCAGTGATGCTCAGCTGTCCAGAAATTCCAGTGACACGTGCCTGAGGAACCCA
CTCCACAAACAGCAGTCACTCCCTCTCCGACCCATCATCCCCCTCGTTGCCCGGATCTCA
GACCAGAACGCCTCTGGGGCACCCCCGATGACTGTCCGGGAGAAAACCCGCCTAGAAAAA
TTCCGCCAGCTTCTCTCCAGCCACAACACTGACTTGGATGAGCTGAGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-157, + strand, RNAz p=0.561497
               

               
               349-468, - strand, RNAz p=0.553114

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-157, + strand, RNAz p=0.561497
               

               
               349-468, - strand, RNAz p=0.553114

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               41-167, - strand, RNAmicro p=0.989062

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               41-167, - strand, RNAmicro p=0.989062

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_017772, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017772, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-212, gnl|bosTau2|chr23 (10181940-10182142)
               

               
               1-212, gnl|Hg17|chr6 (37333525-37333727)
               

               
               1-212, gnl|Mm7|chr17 (27741652-27741856)
               


               
               270-579, gnl|bosTau2|chr23 (10208352-10208661)
               

               
               270-579, gnl|Hg17|chr6 (37355058-37355367)
               

               
               270-579, gnl|Mm7|chr17 (27760506-27760815)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-212, gnl|bosTau2|chr23 (10181940-10182142)
               

               
               1-212, gnl|Hg17|chr6 (37333525-37333727)
               

               
               1-212, gnl|Mm7|chr17 (27741652-27741856)
               


               
               270-579, gnl|bosTau2|chr23 (10208352-10208661)
               

               
               270-579, gnl|Hg17|chr6 (37355058-37355367)
               

               
               270-579, gnl|Mm7|chr17 (27760506-27760815)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	40-157, + strand, RNAz p=0.561497
	349-468, - strand, RNAz p=0.553114

	1-212, gnl\|bosTau2\|chr23 (10181940-10182142)
	1-212, gnl\|Hg17\|chr6 (37333525-37333727)
	1-212, gnl\|Mm7\|chr17 (27741652-27741856)

	270-579, gnl\|bosTau2\|chr23 (10208352-10208661)
	270-579, gnl\|Hg17\|chr6 (37355058-37355367)
	270-579, gnl\|Mm7\|chr17 (27760506-27760815)