Ss1.1-Ova1-OVRM10021C06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCATAATAGGCAGGTGTAATGTTTTCCCTGGCACTGGGGCAGGCCATTGATCAACATCAT TACAAGCTGCTTCCAAATATGGTTCATTCTTTTCAAAATATTCTGGTGCTATCTGTTTGA GCACAGTGTGGAAAAAATGAATATACGGTAGTTTGCTGATCAAAACCAAGGACTTCTGAA AGTAGCCTCTTTTAAGAGTTTTATCTCGAACTTGTCGGAAATACACATATCCATAAAAAT ACGCAGGATCCTTCTTTAAATAAACTGGTAAATCTTTGTCAAATTGATCCAGGAGACAAT GCAGTGACACCCTCCTCCCAGAAGACTGTCGAAATCTAAAACAAAACTGGGTATCTCCAA GACAACCTGAATTTGAATCTGGAAAAGACAAATAGCAAATATTGGTTTTTTCTTTGTCAG TAAGTTTGGAATGTTGAGGATAAATAACCTCTACGGCTTGGCCCAGCTCCAGGTCGAAGC CCACCACACACACGCAGTGCAGCCAGGCAGAGAAGCCGTCCCAGCGCAGCAGGCCCCGGC CGCGGCCCTCGTCTTCCTCATCCTCCTCCGATACAGCTCCCGCCGCCACCAAGGCAGATG CCTCGCGCTCCTCGTCCGTCGCCACCGCCTCATCCGCCGGCCCGCGGGAACCGGGCCCCG AGCCTGCCAGGCCCCGCAGAGCCATCCGCCTCCCCCTTGCTGTTCGCGCCGCCCCCACCG CGGACCGCGCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCATAATAGGCAGGTGTAATGTTTTCCCTGGCACTGGGGCAGGCCATTGATCAACATCAT TACAAGCTGCTTCCAAATATGGTTCATTCTTTTCAAAATATTCTGGTGCTATCTGTTTGA GCACAGTGTGGAAAAAATGAATATACGGTAGTTTGCTGATCAAAACCAAGGACTTCTGAA AGTAGCCTCTTTTAAGAGTTTTATCTCGAACTTGTCGGAAATACACATATCCATAAAAAT ACGCAGGATCCTTCTTTAAATAAACTGGTAAATCTTTGTCAAATTGATCCAGGAGACAAT GCAGTGACACCCTCCTCCCAGAAGACTGTCGAAATCTAAAACAAAACTGGGTATCTCCAA GACAACCTGAATTTGAATCTGGAAAAGACAAATAGCAAATATTGGTTTTTTCTTTGTCAG TAAGTTTGGAATGTTGAGGATAAATAACCTCTACGGCTTGGCCCAGCTCCAGGTCGAAGC CCACCACACACACGCAGTGCAGCCAGGCAGAGAAGCCGTCCCAGCGCAGCAGGCCCCGGC CGCGGCCCTCGTCTTCCTCATCCTCCTCCGATACAGCTCCCGCCGCCACCAAGGCAGATG CCTCGCGCTCCTCGTCCGTCGCCACCGCCTCATCCGCCGGCCCGCGGGAACCGGGCCCCG AGCCTGCCAGGCCCCGCAGAGCCATCCGCCTCCCCCTTGCTGTTCGCGCCGCCCCCACCG CGGACCGCGCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 264-368, - strand, RNAz p=0.526957 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 264-368, - strand, RNAz p=0.526957 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 67-174, gnl|bosTau2|chr22 (33426579-33426472) | |
| 67-174, gnl|canFam2|chr20 (35800013-35799873) | |
| 67-174, gnl|danRer3|chr4 (21271237-21271375) | |
| 67-174, gnl|dasNov1|scaffold_125963 (1163-1023) | |
| 67-174, gnl|fr1|chrUn (266785259-266785122) | |
| 67-174, gnl|galGal2|chr12 (8807830-8807958) | |
| 67-174, gnl|hg17|chr3 (57622202-57622340) | |
| 67-174, gnl|Hg17|chr3 (57622213-57622320) | |
| 67-174, gnl|loxAfr1|scaffold_12322 (35686-35824) | |
| 67-174, gnl|mm7|chr14 (23993933-23993791) | |
| 67-174, gnl|Mm7|chr14 (23993920-23993813) | |
| 67-174, gnl|monDom2|scaffold_5 (2568588-2568724) | |
| 67-174, gnl|panTro1|chr2 (59345103-59345241) | |
| 67-174, gnl|rheMac2|chr2 (78735155-78735018) | |
| 67-174, gnl|rn3|chr16 (1918667-1918529) | |
| 67-174, gnl|tetNig1|chrUn_random (11609494-11609621) | |
| 254-368, gnl|bosTau2|chr22 (33423100-33422986) | |
| 254-368, gnl|canFam2|chr20 (35795812-35795677) | |
| 254-368, gnl|danRer3|chrNA (103270702-103270836) | |
| 254-368, gnl|dasNov1|scaffold_83839 (5207-5072) | |
| 254-368, gnl|echTel1|scaffold_283755 (50115-49980) | |
| 254-368, gnl|fr1|chrUn (266782718-266782582) | |
| 254-368, gnl|galGal2|chr12 (8809159-8809281) | |
| 254-368, gnl|hg17|chr3 (57626884-57627019) | |
| 254-368, gnl|Hg17|chr3 (57626890-57627004) | |
| 254-368, gnl|mm7|chr14 (23990503-23990371) | |
| 254-368, gnl|Mm7|chr14 (23990495-23990381) | |
| 254-368, gnl|monDom2|scaffold_5 (2570811-2570946) | |
| 254-368, gnl|oryCun1|scaffold_196955 (699-834) | |
| 254-368, gnl|panTro1|chr2 (59349854-59349989) | |
| 254-368, gnl|rheMac2|chr2 (78730269-78730134) | |
| 254-368, gnl|rn3|chr16 (1915285-1915150) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 67-174, gnl|bosTau2|chr22 (33426579-33426472) | |
| 67-174, gnl|canFam2|chr20 (35800013-35799873) | |
| 67-174, gnl|danRer3|chr4 (21271237-21271375) | |
| 67-174, gnl|dasNov1|scaffold_125963 (1163-1023) | |
| 67-174, gnl|fr1|chrUn (266785259-266785122) | |
| 67-174, gnl|galGal2|chr12 (8807830-8807958) | |
| 67-174, gnl|hg17|chr3 (57622202-57622340) | |
| 67-174, gnl|Hg17|chr3 (57622213-57622320) | |
| 67-174, gnl|loxAfr1|scaffold_12322 (35686-35824) | |
| 67-174, gnl|mm7|chr14 (23993933-23993791) | |
| 67-174, gnl|Mm7|chr14 (23993920-23993813) | |
| 67-174, gnl|monDom2|scaffold_5 (2568588-2568724) | |
| 67-174, gnl|panTro1|chr2 (59345103-59345241) | |
| 67-174, gnl|rheMac2|chr2 (78735155-78735018) | |
| 67-174, gnl|rn3|chr16 (1918667-1918529) | |
| 67-174, gnl|tetNig1|chrUn_random (11609494-11609621) | |
| 254-368, gnl|bosTau2|chr22 (33423100-33422986) | |
| 254-368, gnl|canFam2|chr20 (35795812-35795677) | |
| 254-368, gnl|danRer3|chrNA (103270702-103270836) | |
| 254-368, gnl|dasNov1|scaffold_83839 (5207-5072) | |
| 254-368, gnl|echTel1|scaffold_283755 (50115-49980) | |
| 254-368, gnl|fr1|chrUn (266782718-266782582) | |
| 254-368, gnl|galGal2|chr12 (8809159-8809281) | |
| 254-368, gnl|hg17|chr3 (57626884-57627019) | |
| 254-368, gnl|Hg17|chr3 (57626890-57627004) | |
| 254-368, gnl|mm7|chr14 (23990503-23990371) | |
| 254-368, gnl|Mm7|chr14 (23990495-23990381) | |
| 254-368, gnl|monDom2|scaffold_5 (2570811-2570946) | |
| 254-368, gnl|oryCun1|scaffold_196955 (699-834) | |
| 254-368, gnl|panTro1|chr2 (59349854-59349989) | |
| 254-368, gnl|rheMac2|chr2 (78730269-78730134) | |
| 254-368, gnl|rn3|chr16 (1915285-1915150) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) | |
| hlv (0.139256) |