Non-Coding RNA Search

Ss1.1-Ova1-OVRM10021C09.5

Sequence:


               
               CTGCTGACCCGCATCGGGGGGCACCGGGGCGCGGGCGGGCCATGCCTGGGAACTACCTGT
CGCTCTGGGAGCTGGTGGAGGAGCACGTTCCGCTCCCGGAGCGGCCCGAAGTGAAGAGGA
TTCTGGGGGAGACGACGGTGGACCTGAGCCTGGAGCTGCGGGCAGAGGTGGTGATGCTAC
GAACACTGCTCCTAGAGGCTCGGTCCTCCCAAGCGCCTGGCTCCTGCCCCACCTCTGACC
CCTCCTCCCTTCTGGCACCACCGCCGCTCCTAAGAGACCTCGTGCGCCAGGAACTACGGC
AGCTGCTCCAGGGTCTCCGCCGGAAGGCCATCTGTGAGGGCAGGGACCAGACCCAGGCCT
GGGTCCGGTATAGCCCCAGGGTCCTGCGCTTTGCTCTGGAGGAGCCCAGGTGTGATGTGC
CAGAACAGAAGATATTGCAGATGAAAGCTGGCGAACCCGGCTGTCACAGGGACCTCAGCA
TCATTAAGGACCAACTCGACGTGTCCCACATCGACGAGGTTGCCGGCCACCTGCGGTGAG
GGCCCTGAGCGTGTGTGGTGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCTGACCCGCATCGGGGGGCACCGGGGCGCGGGCGGGCCATGCCTGGGAACTACCTGT
CGCTCTGGGAGCTGGTGGAGGAGCACGTTCCGCTCCCGGAGCGGCCCGAAGTGAAGAGGA
TTCTGGGGGAGACGACGGTGGACCTGAGCCTGGAGCTGCGGGCAGAGGTGGTGATGCTAC
GAACACTGCTCCTAGAGGCTCGGTCCTCCCAAGCGCCTGGCTCCTGCCCCACCTCTGACC
CCTCCTCCCTTCTGGCACCACCGCCGCTCCTAAGAGACCTCGTGCGCCAGGAACTACGGC
AGCTGCTCCAGGGTCTCCGCCGGAAGGCCATCTGTGAGGGCAGGGACCAGACCCAGGCCT
GGGTCCGGTATAGCCCCAGGGTCCTGCGCTTTGCTCTGGAGGAGCCCAGGTGTGATGTGC
CAGAACAGAAGATATTGCAGATGAAAGCTGGCGAACCCGGCTGTCACAGGGACCTCAGCA
TCATTAAGGACCAACTCGACGTGTCCCACATCGACGAGGTTGCCGGCCACCTGCGGTGAG
GGCCCTGAGCGTGTGTGGTGGGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22749047|ref|NP_689712.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22749047|ref|NP_689712.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               166-365, gnl|bosTau2|chr13 (23902635-23902833)
               

               
               166-365, gnl|Hg17|chr1 (44126975-44127171)
               

               
               166-365, gnl|Mm7|chr4 (117248593-117248407)
               


               
               460-564, gnl|bosTau2|chr13 (23903756-23903860)
               

               
               460-564, gnl|Hg17|chr1 (44128654-44128767)
               

               
               460-564, gnl|Mm7|chr4 (117247578-117247466)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-365, gnl|bosTau2|chr13 (23902635-23902833)
               

               
               166-365, gnl|Hg17|chr1 (44126975-44127171)
               

               
               166-365, gnl|Mm7|chr4 (117248593-117248407)
               


               
               460-564, gnl|bosTau2|chr13 (23903756-23903860)
               

               
               460-564, gnl|Hg17|chr1 (44128654-44128767)
               

               
               460-564, gnl|Mm7|chr4 (117247578-117247466)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csp (0.161186)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	166-365, gnl\|bosTau2\|chr13 (23902635-23902833)
	166-365, gnl\|Hg17\|chr1 (44126975-44127171)
	166-365, gnl\|Mm7\|chr4 (117248593-117248407)

	460-564, gnl\|bosTau2\|chr13 (23903756-23903860)
	460-564, gnl\|Hg17\|chr1 (44128654-44128767)
	460-564, gnl\|Mm7\|chr4 (117247578-117247466)