Ss1.1-Ova1-OVRM10021G11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGATCACCTGATTAGTCTGAGTGGGGCAGTCCAGCTCAGGCATCTCTCCAATAACCTGG AGACTCTCCTCAAGCGGGACTTCCTCAAACTCCTTCCCCTGGAGCTCAGTTTTTATTTGT TAAAATGGCTCGATCCTCAGACTTTACTCACATGCTGCCTCGTCTCTAAACAGTGGAATA AGGTCATAAGTGCCTGTACAGAGGTGTGGCAGACTGCCTGTAAAAATTTGGGCTGGCAGA TAGATGATTCTGTTCAGGACGCTTTGCACTGGAAGAAGGTTTATTTGAAGGCTATTTTGA GAATGAAGCAACTGGAGGACCATGAAGCCTTTGAGACCTCATCTTTAATTGGACACAGTG CCAGAGTGTATGCACTTTACTACAAAGACGGACTTCTCTGTACAGGGTCAGATGACTTGT CTGCAAAACTATGGGATGTGAGCACAGGGCAGTGTGTTTATGGCATCCAGACCCACACTT GTGCAGCGGTGAAGTTTGATGAGCAGAAGCTTGTGACAGGCTCCTTTGACAACACTGTGG CCTGCTGGGAATGGAGTTCCGGAGCCAGGACCCAGCACTTCCGGGGGCACACGGGGGCGG TGTTTAGCGTCGACTACAACGATGAACTGGACATCTTGGTGAGTGGCTCTGCAGACTTCA CTGTGAAAGTATGGGCTTTATCTGCTGGGACGTGCCTGAACACGCTGACTGGGCACACAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGATCACCTGATTAGTCTGAGTGGGGCAGTCCAGCTCAGGCATCTCTCCAATAACCTGG AGACTCTCCTCAAGCGGGACTTCCTCAAACTCCTTCCCCTGGAGCTCAGTTTTTATTTGT TAAAATGGCTCGATCCTCAGACTTTACTCACATGCTGCCTCGTCTCTAAACAGTGGAATA AGGTCATAAGTGCCTGTACAGAGGTGTGGCAGACTGCCTGTAAAAATTTGGGCTGGCAGA TAGATGATTCTGTTCAGGACGCTTTGCACTGGAAGAAGGTTTATTTGAAGGCTATTTTGA GAATGAAGCAACTGGAGGACCATGAAGCCTTTGAGACCTCATCTTTAATTGGACACAGTG CCAGAGTGTATGCACTTTACTACAAAGACGGACTTCTCTGTACAGGGTCAGATGACTTGT CTGCAAAACTATGGGATGTGAGCACAGGGCAGTGTGTTTATGGCATCCAGACCCACACTT GTGCAGCGGTGAAGTTTGATGAGCAGAAGCTTGTGACAGGCTCCTTTGACAACACTGTGG CCTGCTGGGAATGGAGTTCCGGAGCCAGGACCCAGCACTTCCGGGGGCACACGGGGGCGG TGTTTAGCGTCGACTACAACGATGAACTGGACATCTTGGTGAGTGGCTCTGCAGACTTCA CTGTGAAAGTATGGGCTTTATCTGCTGGGACGTGCCTGAACACGCTGACTGGGCACACAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-119, - strand, RNAz p=0.970901 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-119, - strand, RNAz p=0.970901 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-406, gnl|bosTau2|chr8 (61509596-61510001) | |
| 1-406, gnl|Hg17|chr9 (120630005-120629600) | |
| 1-406, gnl|Mm7|chr2 (34830273-34829868) | |
| 600-720, gnl|bosTau2|chr8 (61520040-61520160) | |
| 600-720, gnl|canFam2|chr11 (76863464-76863645) | |
| 600-720, gnl|canFam2|chr11 (76863473-76863610) | |
| 600-720, gnl|danRer3|chr5 (27555413-27555272) | |
| 600-720, gnl|danRer3|chr5 (27555404-27555274) | |
| 600-720, gnl|dasNov1|scaffold_102269 (759-938) | |
| 600-720, gnl|dasNov1|scaffold_102269 (766-905) | |
| 600-720, gnl|echTel1|scaffold_289123 (94999-94817) | |
| 600-720, gnl|echTel1|scaffold_289123 (94988-94852) | |
| 600-720, gnl|fr1|chrUn (219578417-219578587) | |
| 600-720, gnl|fr1|chrUn (219578436-219578566) | |
| 600-720, gnl|galGal2|chr17 (71573-71391) | |
| 600-720, gnl|galGal2|chr17 (71564-71429) | |
| 600-720, gnl|hg17|chr5 (178358112-178358242) | |
| 600-720, gnl|hg17|chr9 (120617915-120618095) | |
| 600-720, gnl|Hg17|chr9 (120618059-120617939) | |
| 600-720, gnl|loxAfr1|scaffold_14439 (40000-40179) | |
| 600-720, gnl|loxAfr1|scaffold_14439 (40010-40146) | |
| 600-720, gnl|mm7|chr2 (34818284-34818464) | |
| 600-720, gnl|mm7|chr2 (34818291-34818430) | |
| 600-720, gnl|Mm7|chr2 (34818428-34818308) | |
| 600-720, gnl|monDom2|scaffold_38 (13001833-13002017) | |
| 600-720, gnl|monDom2|scaffold_38 (13001840-13001977) | |
| 600-720, gnl|oryCun1|scaffold_201334 (126781-126963) | |
| 600-720, gnl|oryCun1|scaffold_201334 (126788-126927) | |
| 600-720, gnl|panTro1|chr11 (105354390-105354570) | |
| 600-720, gnl|panTro1|chr4 (185867275-185867405) | |
| 600-720, gnl|rheMac2|chr15 (15236772-15236592) | |
| 600-720, gnl|rheMac2|chr6 (175619134-175619264) | |
| 600-720, gnl|rn3|chr3 (13721272-13721454) | |
| 600-720, gnl|rn3|chr3 (13721279-13721418) | |
| 600-720, gnl|tetNig1|chrUn_random (90106532-90106387) | |
| 600-720, gnl|tetNig1|chrUn_random (90106519-90106389) | |
| 600-720, gnl|xenTro1|scaffold_95 (2338334-2338510) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-406, gnl|bosTau2|chr8 (61509596-61510001) | |
| 1-406, gnl|Hg17|chr9 (120630005-120629600) | |
| 1-406, gnl|Mm7|chr2 (34830273-34829868) | |
| 600-720, gnl|bosTau2|chr8 (61520040-61520160) | |
| 600-720, gnl|canFam2|chr11 (76863464-76863645) | |
| 600-720, gnl|canFam2|chr11 (76863473-76863610) | |
| 600-720, gnl|danRer3|chr5 (27555413-27555272) | |
| 600-720, gnl|danRer3|chr5 (27555404-27555274) | |
| 600-720, gnl|dasNov1|scaffold_102269 (759-938) | |
| 600-720, gnl|dasNov1|scaffold_102269 (766-905) | |
| 600-720, gnl|echTel1|scaffold_289123 (94999-94817) | |
| 600-720, gnl|echTel1|scaffold_289123 (94988-94852) | |
| 600-720, gnl|fr1|chrUn (219578417-219578587) | |
| 600-720, gnl|fr1|chrUn (219578436-219578566) | |
| 600-720, gnl|galGal2|chr17 (71573-71391) | |
| 600-720, gnl|galGal2|chr17 (71564-71429) | |
| 600-720, gnl|hg17|chr5 (178358112-178358242) | |
| 600-720, gnl|hg17|chr9 (120617915-120618095) | |
| 600-720, gnl|Hg17|chr9 (120618059-120617939) | |
| 600-720, gnl|loxAfr1|scaffold_14439 (40000-40179) | |
| 600-720, gnl|loxAfr1|scaffold_14439 (40010-40146) | |
| 600-720, gnl|mm7|chr2 (34818284-34818464) | |
| 600-720, gnl|mm7|chr2 (34818291-34818430) | |
| 600-720, gnl|Mm7|chr2 (34818428-34818308) | |
| 600-720, gnl|monDom2|scaffold_38 (13001833-13002017) | |
| 600-720, gnl|monDom2|scaffold_38 (13001840-13001977) | |
| 600-720, gnl|oryCun1|scaffold_201334 (126781-126963) | |
| 600-720, gnl|oryCun1|scaffold_201334 (126788-126927) | |
| 600-720, gnl|panTro1|chr11 (105354390-105354570) | |
| 600-720, gnl|panTro1|chr4 (185867275-185867405) | |
| 600-720, gnl|rheMac2|chr15 (15236772-15236592) | |
| 600-720, gnl|rheMac2|chr6 (175619134-175619264) | |
| 600-720, gnl|rn3|chr3 (13721272-13721454) | |
| 600-720, gnl|rn3|chr3 (13721279-13721418) | |
| 600-720, gnl|tetNig1|chrUn_random (90106532-90106387) | |
| 600-720, gnl|tetNig1|chrUn_random (90106519-90106389) | |
| 600-720, gnl|xenTro1|scaffold_95 (2338334-2338510) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.115035) |