Ss1.1-Ova1-OVRM10024D07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGGACCCATTTCGGAGGAGCGGCTGACGCGACGTGGTCTGAGCCACGGGCACGAGCGCG TGCCTACGACAGCGCTGGCCAGCCGCGTCGCGAGGAGGCCCCGCCTTCCCGTCCCGCCCC CGCCGACCTCCCCTTCTCCCGCTACCCTGTGGGCACTGAGAACGCCGGCACCCGCGCGCG CTGTGTAGCCATGGAAGTACCCGGTAGCCTGTGCAAGAAAGTCAAGCTGAGCAATAACGC GCAAAACTGGGGGATGCAGAGAGCGACTAATGTCACTTATCAAGCTCATCATGTCAGTAG GAACAAGAGAGGCCAGGTGGTGGGGACCAGAGGTGGCTTTCGTGGTTGCACAGTTTGGCT AACAGGCTTATCTGGAGCAGGAAAGACCACAGTAAGCATGGCTTTGGAGGAGTACTTGGT TTGCCATGGTATTCCATGTTACACTTTGGATGGTGACAACATTCGTCAAGGTCTCAATAA AAATCTTGGCTTTAGTCCTGAAGACAGAGAAGAGAATGTTCGACGCATCGCGGAAGTTGC GAAGCTGTTTGCAGATGCTGGCTTAGTGTGCATCACAAGCTTTATATCACCTTATACTCA GGATCGCAACAATGCAAGGCAGATTCACGAGGGTGCAAGCCTACCTTTTTTTGAAGTGTT TGTTGATGCTCCCCTGCACGTTTGTGAACAGAGGGATGTCAAAGGACTCTACAAAAAAGC AAGGGCTGGAGAAATTAAAGGTTTCACTGGGATTGATTCTGAATATGAAAAGCCAGAGGC CCCTGAATTGGTGCTGAAAACAGACTCCTGTGATGTAAATGACTGCGTCCAGCAGGTCGT GGAACTTCTGCAGGAACGGGATATTGTACCTGTAGATGCCTCTTATGAAGTGAAAGAACT ATATGTGCCAGAAAATAAACTTCATTTGGCAAAAACAGATGCAGAAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGGACCCATTTCGGAGGAGCGGCTGACGCGACGTGGTCTGAGCCACGGGCACGAGCGCG TGCCTACGACAGCGCTGGCCAGCCGCGTCGCGAGGAGGCCCCGCCTTCCCGTCCCGCCCC CGCCGACCTCCCCTTCTCCCGCTACCCTGTGGGCACTGAGAACGCCGGCACCCGCGCGCG CTGTGTAGCCATGGAAGTACCCGGTAGCCTGTGCAAGAAAGTCAAGCTGAGCAATAACGC GCAAAACTGGGGGATGCAGAGAGCGACTAATGTCACTTATCAAGCTCATCATGTCAGTAG GAACAAGAGAGGCCAGGTGGTGGGGACCAGAGGTGGCTTTCGTGGTTGCACAGTTTGGCT AACAGGCTTATCTGGAGCAGGAAAGACCACAGTAAGCATGGCTTTGGAGGAGTACTTGGT TTGCCATGGTATTCCATGTTACACTTTGGATGGTGACAACATTCGTCAAGGTCTCAATAA AAATCTTGGCTTTAGTCCTGAAGACAGAGAAGAGAATGTTCGACGCATCGCGGAAGTTGC GAAGCTGTTTGCAGATGCTGGCTTAGTGTGCATCACAAGCTTTATATCACCTTATACTCA GGATCGCAACAATGCAAGGCAGATTCACGAGGGTGCAAGCCTACCTTTTTTTGAAGTGTT TGTTGATGCTCCCCTGCACGTTTGTGAACAGAGGGATGTCAAAGGACTCTACAAAAAAGC AAGGGCTGGAGAAATTAAAGGTTTCACTGGGATTGATTCTGAATATGAAAAGCCAGAGGC CCCTGAATTGGTGCTGAAAACAGACTCCTGTGATGTAAATGACTGCGTCCAGCAGGTCGT GGAACTTCTGCAGGAACGGGATATTGTACCTGTAGATGCCTCTTATGAAGTGAAAGAACT ATATGTGCCAGAAAATAAACTTCATTTGGCAAAAACAGATGCAGAAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 364-482, + strand, RNAz p=0.541154 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 364-482, + strand, RNAz p=0.541154 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-254, gnl|bosTau2|chr6 (6757632-6757377) | |
| 1-254, gnl|Hg17|chr4 (108999134-108998876) | |
| 1-254, gnl|Mm7|chr3 (131361678-131361916) | |
| 364-602, gnl|bosTau2|chr6 (6737316-6737078) | |
| 364-602, gnl|canFam2|chr32 (31137900-31138165) | |
| 364-602, gnl|danRer3|chr1 (49659359-49659105) | |
| 364-602, gnl|dasNov1|scaffold_186735 (853-1117) | |
| 364-602, gnl|echTel1|scaffold_179278 (2202-2461) | |
| 364-602, gnl|fr1|chrUn (70998694-70998957) | |
| 364-602, gnl|galGal2|chr4 (38655268-38655019) | |
| 364-602, gnl|hg17|chr4 (108972521-108972786) | |
| 364-602, gnl|Hg17|chr4 (108972768-108972530) | |
| 364-602, gnl|loxAfr1|scaffold_23178 (19620-19884) | |
| 364-602, gnl|mm7|chr3 (131379557-131379293) | |
| 364-602, gnl|Mm7|chr3 (131379308-131379546) | |
| 364-602, gnl|monDom2|scaffold_37 (2344948-2344687) | |
| 364-602, gnl|oryCun1|scaffold_206852 (1648-1383) | |
| 364-602, gnl|rheMac2|chr5 (100627851-100628116) | |
| 364-602, gnl|rn3|chr1 (236810077-236809829) | |
| 364-602, gnl|tetNig1|chr18 (6051409-6051642) | |
| 364-602, gnl|xenTro1|scaffold_173 (172871-172617) | |
| 735-860, gnl|bosTau2|chr6 (6723017-6722892) | |
| 735-860, gnl|canFam2|chr32 (31126455-31126621) | |
| 735-860, gnl|danRer3|chr1 (49663650-49663512) | |
| 735-860, gnl|dasNov1|scaffold_73563 (11410-11570) | |
| 735-860, gnl|echTel1|scaffold_197012 (2017-2186) | |
| 735-860, gnl|fr1|chrUn (70998003-70998153) | |
| 735-860, gnl|galGal2|chr4 (38659620-38659477) | |
| 735-860, gnl|hg17|chr4 (108960743-108960910) | |
| 735-860, gnl|Hg17|chr4 (108960899-108960774) | |
| 735-860, gnl|loxAfr1|scaffold_24074 (20504-20671) | |
| 735-860, gnl|mm7|chr3 (131382122-131381963) | |
| 735-860, gnl|Mm7|chr3 (131381972-131382096) | |
| 735-860, gnl|monDom2|scaffold_37 (2358858-2358710) | |
| 735-860, gnl|oryCun1|scaffold_1319 (873-710) | |
| 735-860, gnl|panTro1|chr3 (125447913-125448080) | |
| 735-860, gnl|rheMac2|chr5 (100616601-100616768) | |
| 735-860, gnl|rn3|chr2_random (3169019-3169189) | |
| 735-860, gnl|tetNig1|chr18 (6050872-6051009) | |
| 735-860, gnl|xenTro1|scaffold_173 (175230-175081) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-254, gnl|bosTau2|chr6 (6757632-6757377) | |
| 1-254, gnl|Hg17|chr4 (108999134-108998876) | |
| 1-254, gnl|Mm7|chr3 (131361678-131361916) | |
| 364-602, gnl|bosTau2|chr6 (6737316-6737078) | |
| 364-602, gnl|canFam2|chr32 (31137900-31138165) | |
| 364-602, gnl|danRer3|chr1 (49659359-49659105) | |
| 364-602, gnl|dasNov1|scaffold_186735 (853-1117) | |
| 364-602, gnl|echTel1|scaffold_179278 (2202-2461) | |
| 364-602, gnl|fr1|chrUn (70998694-70998957) | |
| 364-602, gnl|galGal2|chr4 (38655268-38655019) | |
| 364-602, gnl|hg17|chr4 (108972521-108972786) | |
| 364-602, gnl|Hg17|chr4 (108972768-108972530) | |
| 364-602, gnl|loxAfr1|scaffold_23178 (19620-19884) | |
| 364-602, gnl|mm7|chr3 (131379557-131379293) | |
| 364-602, gnl|Mm7|chr3 (131379308-131379546) | |
| 364-602, gnl|monDom2|scaffold_37 (2344948-2344687) | |
| 364-602, gnl|oryCun1|scaffold_206852 (1648-1383) | |
| 364-602, gnl|rheMac2|chr5 (100627851-100628116) | |
| 364-602, gnl|rn3|chr1 (236810077-236809829) | |
| 364-602, gnl|tetNig1|chr18 (6051409-6051642) | |
| 364-602, gnl|xenTro1|scaffold_173 (172871-172617) | |
| 735-860, gnl|bosTau2|chr6 (6723017-6722892) | |
| 735-860, gnl|canFam2|chr32 (31126455-31126621) | |
| 735-860, gnl|danRer3|chr1 (49663650-49663512) | |
| 735-860, gnl|dasNov1|scaffold_73563 (11410-11570) | |
| 735-860, gnl|echTel1|scaffold_197012 (2017-2186) | |
| 735-860, gnl|fr1|chrUn (70998003-70998153) | |
| 735-860, gnl|galGal2|chr4 (38659620-38659477) | |
| 735-860, gnl|hg17|chr4 (108960743-108960910) | |
| 735-860, gnl|Hg17|chr4 (108960899-108960774) | |
| 735-860, gnl|loxAfr1|scaffold_24074 (20504-20671) | |
| 735-860, gnl|mm7|chr3 (131382122-131381963) | |
| 735-860, gnl|Mm7|chr3 (131381972-131382096) | |
| 735-860, gnl|monDom2|scaffold_37 (2358858-2358710) | |
| 735-860, gnl|oryCun1|scaffold_1319 (873-710) | |
| 735-860, gnl|panTro1|chr3 (125447913-125448080) | |
| 735-860, gnl|rheMac2|chr5 (100616601-100616768) | |
| 735-860, gnl|rn3|chr2_random (3169019-3169189) | |
| 735-860, gnl|tetNig1|chr18 (6050872-6051009) | |
| 735-860, gnl|xenTro1|scaffold_173 (175230-175081) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nlu (0.191681) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eje (0.0988338) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eje (0.0988338) |