Non-Coding RNA Search

Ss1.1-Ova1-OVRM10024E05.5

Sequence:


               
               GGTCTTTACTGAAACTATGAGCAAGATGGAAACAATTTGTAAAATGATTTTAAGGCAAAT
TTGGTTTTTACTCCTGCTATGTTAGGATTTGATTCTATTAACTATCAGACCCAATTTCTT
TTTTAACTCTATAGCCAGTTTATGTCTGCATCTAAAATAAGAATGTGGAGTTCCCGTCGT
GGCACAGTGGTTAACGAATCCGACTAGGAACCATGAGGTTGCGGGTTTGATCCCTGGCCT
TGCTCAGTGGGTTAAGGACCCGGTGTTGCCTTGAGCTGTGGTGTAGGTTGCAGACGCGGC
TCGGATCCCACATTGCTGTGGCCCTGGTGTAGGCCGGCGGCTACAGCTCCGATTGGACCC
CTAGCCTGGGAACCTCCATATGCTGCGGGAGCGGCCCAAGAAATGGCAAAAAGACAAAAA
TAAAATAAGAATGTGCTGTATACTATGGTATAATACATAGTTTTCTTAAATTTTAATAAA
TTTGCATCTTTAAAGTGTTTACAGATTGTTTCTGTTATATCTACAGCTGAAGTTGGTAAA
GTCTAAAAAGCCTAAGGACTTTATGAAGACCTCATATGTCAGGAAAATTACAGGTTACCA
TTTTATAACTTTATTGCCATAGGGAAATACCATGAAGTCTTGGTTTGGAATGTAACATAT
CAGAAATGGTGTGTCAGTGGTCAGTGGTCTCCTACCCTGACTCACCTGGGAAGACCAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCTTTACTGAAACTATGAGCAAGATGGAAACAATTTGTAAAATGATTTTAAGGCAAAT
TTGGTTTTTACTCCTGCTATGTTAGGATTTGATTCTATTAACTATCAGACCCAATTTCTT
TTTTAACTCTATAGCCAGTTTATGTCTGCATCTAAAATAAGAATGTGGAGTTCCCGTCGT
GGCACAGTGGTTAACGAATCCGACTAGGAACCATGAGGTTGCGGGTTTGATCCCTGGCCT
TGCTCAGTGGGTTAAGGACCCGGTGTTGCCTTGAGCTGTGGTGTAGGTTGCAGACGCGGC
TCGGATCCCACATTGCTGTGGCCCTGGTGTAGGCCGGCGGCTACAGCTCCGATTGGACCC
CTAGCCTGGGAACCTCCATATGCTGCGGGAGCGGCCCAAGAAATGGCAAAAAGACAAAAA
TAAAATAAGAATGTGCTGTATACTATGGTATAATACATAGTTTTCTTAAATTTTAATAAA
TTTGCATCTTTAAAGTGTTTACAGATTGTTTCTGTTATATCTACAGCTGAAGTTGGTAAA
GTCTAAAAAGCCTAAGGACTTTATGAAGACCTCATATGTCAGGAAAATTACAGGTTACCA
TTTTATAACTTTATTGCCATAGGGAAATACCATGAAGTCTTGGTTTGGAATGTAACATAT
CAGAAATGGTGTGTCAGTGGTCAGTGGTCTCCTACCCTGACTCACCTGGGAAGACCAGGG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               16-163, gnl|bosTau2|chr9 (34194081-34194227)
               

               
               16-163, gnl|Hg17|chr6 (90094725-90094575)
               

               
               16-163, gnl|Mm7|chr4 (33329660-33329815)
               


               
               421-719, gnl|bosTau2|chr9 (34194217-34194523)
               

               
               421-719, gnl|Hg17|chr6 (90094585-90094298)
               

               
               421-719, gnl|Mm7|chr4 (33329805-33330086)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-163, gnl|bosTau2|chr9 (34194081-34194227)
               

               
               16-163, gnl|Hg17|chr6 (90094725-90094575)
               

               
               16-163, gnl|Mm7|chr4 (33329660-33329815)
               


               
               421-719, gnl|bosTau2|chr9 (34194217-34194523)
               

               
               421-719, gnl|Hg17|chr6 (90094585-90094298)
               

               
               421-719, gnl|Mm7|chr4 (33329805-33330086)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lin (0.145603)
               

               
               cly (0.120642)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               cly (0.120642)

	16-163, gnl\|bosTau2\|chr9 (34194081-34194227)
	16-163, gnl\|Hg17\|chr6 (90094725-90094575)
	16-163, gnl\|Mm7\|chr4 (33329660-33329815)

	421-719, gnl\|bosTau2\|chr9 (34194217-34194523)
	421-719, gnl\|Hg17\|chr6 (90094585-90094298)
	421-719, gnl\|Mm7\|chr4 (33329805-33330086)