Non-Coding RNA Search

Ss1.1-Ova1-OVRM10024G10.5

Sequence:


               
               TATTCAGAGCCAAAAATGCCCCAGTAAGGAAAGCTTAAATATGCAAAGCTGTATTACCTT
TCTTAACTTTCCCGACACATAGTCCTCTCTAGCTGTATCATAAATTAGCTAATTAAAAAT
TAACTAATTATACTAACCCACTGTCTTATTTTCAAATGAATTAAAACCAGAACACAAATT
TCTGTCAAGTCCACAATTCAGTTGATCACTATAACAGCAGAACAACCCAATATTGACAGA
CGGAAGCACATAAAATTATACAACTCAAAACTTTATAAGCTTTGCTTTAGAATTTTAAGA
TGAGGCAATATCAAGATGTTTATATAAGAGCTATAAACACTGGTAAGAATGAGCATTCAA
TTTATGGGTTGATTTCCAATTTAATTGACAATACTGAATACCTAGGTCAAATTTCTGTTC
TCACTTCCCCCAGTAGCATAATTTTATTATTTGAACATTTTAAGATGAGGAAGATCCACT
AAAAAAGTTAAAGCATCTTTTCATCAGAATCCACTCTTCTAGAGATAAAGAAAAACACTC
AATACCCGCCCTATGCGTGCATGCTCACACACACACACAACTATATGCACACATGTTCAC
ACACACACACACAAACATATGCACACACACTCAACCTGAGTCCAGCGGAATACAGAGAAT
AAATCACTTCCTTGAAAAATCTTATTTAAAAAAAAAAGCCTGACCTCCCTTGAGAATCCT
TCCCCTCCCTGGAATGTCACTGTTTGTGTATATGAAACCATCTCATGCACTGTGGCTCCA
GGGTTTCTGTTACTAGTTTATGCACTTGGGAGAAAACTTAAAATGGAAGATGTAGCACAT
TTTGCTTTCCCATTTATTGTTTGGCCAGCTATGCCAATGTGGTGCTATTGTTTCTTTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTCAGAGCCAAAAATGCCCCAGTAAGGAAAGCTTAAATATGCAAAGCTGTATTACCTT
TCTTAACTTTCCCGACACATAGTCCTCTCTAGCTGTATCATAAATTAGCTAATTAAAAAT
TAACTAATTATACTAACCCACTGTCTTATTTTCAAATGAATTAAAACCAGAACACAAATT
TCTGTCAAGTCCACAATTCAGTTGATCACTATAACAGCAGAACAACCCAATATTGACAGA
CGGAAGCACATAAAATTATACAACTCAAAACTTTATAAGCTTTGCTTTAGAATTTTAAGA
TGAGGCAATATCAAGATGTTTATATAAGAGCTATAAACACTGGTAAGAATGAGCATTCAA
TTTATGGGTTGATTTCCAATTTAATTGACAATACTGAATACCTAGGTCAAATTTCTGTTC
TCACTTCCCCCAGTAGCATAATTTTATTATTTGAACATTTTAAGATGAGGAAGATCCACT
AAAAAAGTTAAAGCATCTTTTCATCAGAATCCACTCTTCTAGAGATAAAGAAAAACACTC
AATACCCGCCCTATGCGTGCATGCTCACACACACACACAACTATATGCACACATGTTCAC
ACACACACACACAAACATATGCACACACACTCAACCTGAGTCCAGCGGAATACAGAGAAT
AAATCACTTCCTTGAAAAATCTTATTTAAAAAAAAAAGCCTGACCTCCCTTGAGAATCCT
TCCCCTCCCTGGAATGTCACTGTTTGTGTATATGAAACCATCTCATGCACTGTGGCTCCA
GGGTTTCTGTTACTAGTTTATGCACTTGGGAGAAAACTTAAAATGGAAGATGTAGCACAT
TTTGCTTTCCCATTTATTGTTTGGCCAGCTATGCCAATGTGGTGCTATTGTTTCTTTAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               783-900, + strand, RNAz p=0.55091

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               783-900, + strand, RNAz p=0.55091

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_000618, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_000618, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-579, gnl|bosTau2|chr5 (37959479-37958897)
               

               
               1-579, gnl|canFam2|chr15 (44210206-44210675)
               

               
               1-579, gnl|dasNov1|scaffold_256 (21441-21892)
               

               
               1-579, gnl|echTel1|scaffold_316487 (72446-72003)
               

               
               1-579, gnl|hg17|chr12 (101295355-101295845)
               

               
               1-579, gnl|Hg17|chr12 (101295968-101295355)
               

               
               1-579, gnl|mm7|chr10 (87492264-87491761)
               

               
               1-579, gnl|Mm7|chr10 (87491640-87492262)
               

               
               1-579, gnl|oryCun1|scaffold_145557 (5462-4992)
               

               
               1-579, gnl|panTro1|chr10 (103761537-103762023)
               

               
               1-579, gnl|rheMac2|chr11 (103590155-103590650)
               

               
               1-579, gnl|rn3|chr7 (24628239-24627712)
               


               
               601-900, gnl|bosTau2|chr5 (37958923-37958617)
               

               
               601-900, gnl|Hg17|chr12 (101295401-101295068)
               

               
               601-900, gnl|Mm7|chr10 (87492208-87492536)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-579, gnl|bosTau2|chr5 (37959479-37958897)
               

               
               1-579, gnl|canFam2|chr15 (44210206-44210675)
               

               
               1-579, gnl|dasNov1|scaffold_256 (21441-21892)
               

               
               1-579, gnl|echTel1|scaffold_316487 (72446-72003)
               

               
               1-579, gnl|hg17|chr12 (101295355-101295845)
               

               
               1-579, gnl|Hg17|chr12 (101295968-101295355)
               

               
               1-579, gnl|mm7|chr10 (87492264-87491761)
               

               
               1-579, gnl|Mm7|chr10 (87491640-87492262)
               

               
               1-579, gnl|oryCun1|scaffold_145557 (5462-4992)
               

               
               1-579, gnl|panTro1|chr10 (103761537-103762023)
               

               
               1-579, gnl|rheMac2|chr11 (103590155-103590650)
               

               
               1-579, gnl|rn3|chr7 (24628239-24627712)
               


               
               601-900, gnl|bosTau2|chr5 (37958923-37958617)
               

               
               601-900, gnl|Hg17|chr12 (101295401-101295068)
               

               
               601-900, gnl|Mm7|chr10 (87492208-87492536)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               bfe (0.149858)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.149858)
               

               
               ese (0.126502)

	1-579, gnl\|bosTau2\|chr5 (37959479-37958897)
	1-579, gnl\|canFam2\|chr15 (44210206-44210675)
	1-579, gnl\|dasNov1\|scaffold_256 (21441-21892)
	1-579, gnl\|echTel1\|scaffold_316487 (72446-72003)
	1-579, gnl\|hg17\|chr12 (101295355-101295845)
	1-579, gnl\|Hg17\|chr12 (101295968-101295355)
	1-579, gnl\|mm7\|chr10 (87492264-87491761)
	1-579, gnl\|Mm7\|chr10 (87491640-87492262)
	1-579, gnl\|oryCun1\|scaffold_145557 (5462-4992)
	1-579, gnl\|panTro1\|chr10 (103761537-103762023)
	1-579, gnl\|rheMac2\|chr11 (103590155-103590650)
	1-579, gnl\|rn3\|chr7 (24628239-24627712)

	601-900, gnl\|bosTau2\|chr5 (37958923-37958617)
	601-900, gnl\|Hg17\|chr12 (101295401-101295068)
	601-900, gnl\|Mm7\|chr10 (87492208-87492536)