Ss1.1-Ova1-OVRM10025G04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCACGTGCATCATCTGCCAGGACCTACTGCACGATGGTGTGAGCCTGCAGCCCTGCATG CACACCTTCTGTGCCGCCGGCTACTCAGGCTGGATGGAGCGTTCCACCCTGTGCCCCACC TGCCGCTGTCCAGGGGAGCGGATCTGTAAAAACCACATCCTCAACAACCTGGTGGAGGCG TACCTGCTGCAGCACCCAGACAAGGGCCGCAGTGAGGAGGACGTGCGCAGCATGGCTGCG CGGAACAAGATCACTCAGGACATGCTGCAGCCCAAGGTCAGACGGGCCTTCTCTGACGAG GAGGGGAGTTCTGAGGACCTACTGGAGTTGTCAGATGTGGACAGTGAAGCCTCGGACGTT AGCCAGCCCTACATTGTGTGCCGGCAGTGCCCTGAGTACCGAAGGCAGGCCGGGCAGCCT CTTCCCTGCCCTGGTCCTGGCAGTGAGCCGGGGGCACCACAGGCCCCCTCGGAGGCACCA TCAACATCGACCAGCGTCACAACAGCCCAGGACTACGTGTGCGCCCTGCAGGGAAGCCAC GCCATCTGCACCTGCTGCTTCCAGCCTATGCCGGACCGGAGGGCGGAACGCGAGCGGGAC CCCCGAATCGCCCCCCAGCAGTGTGCCGTTTGCCTGCAGCCCTTTTGCCACCTGTACTGG GGCTGTGCCCGGACCGGCTGCCTCGGCTGCCTGGCCCCATTCTGCGAACTCAATCTGGGT GACCGGTGTCTGGATGGGGTGCTGAGCAACAACAACTATGAGTCGGATGTCCTGAAGAAT TACCTGGCCACCAGGGGCCTGACGTGGAGAAACATGTTGACGGAGAGCCTGGTGGCCCTG CAGAGGGGTGTGTTCTTGCTGTCTGATTACAGAGTCACTGGGAACACCGTGCTGTGCTAC TGCTGTGGCCTGCGGAGCTTCCGTGAGCTGACCTACCAGTACCGGCAGAACATTCCCGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCACGTGCATCATCTGCCAGGACCTACTGCACGATGGTGTGAGCCTGCAGCCCTGCATG CACACCTTCTGTGCCGCCGGCTACTCAGGCTGGATGGAGCGTTCCACCCTGTGCCCCACC TGCCGCTGTCCAGGGGAGCGGATCTGTAAAAACCACATCCTCAACAACCTGGTGGAGGCG TACCTGCTGCAGCACCCAGACAAGGGCCGCAGTGAGGAGGACGTGCGCAGCATGGCTGCG CGGAACAAGATCACTCAGGACATGCTGCAGCCCAAGGTCAGACGGGCCTTCTCTGACGAG GAGGGGAGTTCTGAGGACCTACTGGAGTTGTCAGATGTGGACAGTGAAGCCTCGGACGTT AGCCAGCCCTACATTGTGTGCCGGCAGTGCCCTGAGTACCGAAGGCAGGCCGGGCAGCCT CTTCCCTGCCCTGGTCCTGGCAGTGAGCCGGGGGCACCACAGGCCCCCTCGGAGGCACCA TCAACATCGACCAGCGTCACAACAGCCCAGGACTACGTGTGCGCCCTGCAGGGAAGCCAC GCCATCTGCACCTGCTGCTTCCAGCCTATGCCGGACCGGAGGGCGGAACGCGAGCGGGAC CCCCGAATCGCCCCCCAGCAGTGTGCCGTTTGCCTGCAGCCCTTTTGCCACCTGTACTGG GGCTGTGCCCGGACCGGCTGCCTCGGCTGCCTGGCCCCATTCTGCGAACTCAATCTGGGT GACCGGTGTCTGGATGGGGTGCTGAGCAACAACAACTATGAGTCGGATGTCCTGAAGAAT TACCTGGCCACCAGGGGCCTGACGTGGAGAAACATGTTGACGGAGAGCCTGGTGGCCCTG CAGAGGGGTGTGTTCTTGCTGTCTGATTACAGAGTCACTGGGAACACCGTGCTGTGCTAC TGCTGTGGCCTGCGGAGCTTCCGTGAGCTGACCTACCAGTACCGGCAGAACATTCCCGCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 43-362, gnl|bosTau2|chr2 (78687144-78686825) | |
| 43-362, gnl|Hg17|chr12 (132044497-132043404) | |
| 43-362, gnl|Mm7|chr5 (109318857-109319803) | |
| 502-625, gnl|bosTau2|chr2 (78683860-78683737) | |
| 502-625, gnl|canFam2|chr26 (3318022-3317886) | |
| 502-625, gnl|dasNov1|scaffold_78310 (158-19) | |
| 502-625, gnl|echTel1|scaffold_289752 (7089-6955) | |
| 502-625, gnl|fr1|chrUn (71816587-71816464) | |
| 502-625, gnl|galGal2|chr15 (1490244-1490372) | |
| 502-625, gnl|hg17|chr12 (132038548-132038687) | |
| 502-625, gnl|Hg17|chr12 (132038674-132038551) | |
| 502-625, gnl|mm7|chr5 (109325449-109325310) | |
| 502-625, gnl|Mm7|chr5 (109325321-109325444) | |
| 502-625, gnl|monDom2|scaffold_54 (1988634-1988776) | |
| 502-625, gnl|oryCun1|scaffold_209455 (165603-165722) | |
| 502-625, gnl|panTro1|chr10 (134899330-134899469) | |
| 502-625, gnl|rheMac2|chr11 (134148242-134148380) | |
| 502-625, gnl|rn3|chr12 (46531254-46531391) | |
| 502-625, gnl|tetNig1|chr12 (10801589-10801466) | |
| 502-625, gnl|xenTro1|scaffold_118 (1687499-1687625) | |
| 856-960, gnl|bosTau2|chr2 (78678456-78678352) | |
| 856-960, gnl|canFam2|chr26 (3323013-3322855) | |
| 856-960, gnl|danRer3|chr15 (15228006-15228132) | |
| 856-960, gnl|echTel1|scaffold_289752 (10524-10390) | |
| 856-960, gnl|fr1|chrUn (71817610-71817486) | |
| 856-960, gnl|galGal2|chr15 (1488067-1488194) | |
| 856-960, gnl|hg17|chr12 (132030951-132031085) | |
| 856-960, gnl|Hg17|chr12 (132031080-132030976) | |
| 856-960, gnl|mm7|chr5 (109334768-109334619) | |
| 856-960, gnl|Mm7|chr5 (109334638-109334741) | |
| 856-960, gnl|monDom2|scaffold_54 (1983631-1983759) | |
| 856-960, gnl|oryCun1|scaffold_134675 (646-503) | |
| 856-960, gnl|panTro1|chr10 (134891933-134892067) | |
| 856-960, gnl|rheMac2|chr11 (134141630-134141778) | |
| 856-960, gnl|rn3|chr12 (46522796-46522927) | |
| 856-960, gnl|tetNig1|chr12 (10802644-10802523) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 43-362, gnl|bosTau2|chr2 (78687144-78686825) | |
| 43-362, gnl|Hg17|chr12 (132044497-132043404) | |
| 43-362, gnl|Mm7|chr5 (109318857-109319803) | |
| 502-625, gnl|bosTau2|chr2 (78683860-78683737) | |
| 502-625, gnl|canFam2|chr26 (3318022-3317886) | |
| 502-625, gnl|dasNov1|scaffold_78310 (158-19) | |
| 502-625, gnl|echTel1|scaffold_289752 (7089-6955) | |
| 502-625, gnl|fr1|chrUn (71816587-71816464) | |
| 502-625, gnl|galGal2|chr15 (1490244-1490372) | |
| 502-625, gnl|hg17|chr12 (132038548-132038687) | |
| 502-625, gnl|Hg17|chr12 (132038674-132038551) | |
| 502-625, gnl|mm7|chr5 (109325449-109325310) | |
| 502-625, gnl|Mm7|chr5 (109325321-109325444) | |
| 502-625, gnl|monDom2|scaffold_54 (1988634-1988776) | |
| 502-625, gnl|oryCun1|scaffold_209455 (165603-165722) | |
| 502-625, gnl|panTro1|chr10 (134899330-134899469) | |
| 502-625, gnl|rheMac2|chr11 (134148242-134148380) | |
| 502-625, gnl|rn3|chr12 (46531254-46531391) | |
| 502-625, gnl|tetNig1|chr12 (10801589-10801466) | |
| 502-625, gnl|xenTro1|scaffold_118 (1687499-1687625) | |
| 856-960, gnl|bosTau2|chr2 (78678456-78678352) | |
| 856-960, gnl|canFam2|chr26 (3323013-3322855) | |
| 856-960, gnl|danRer3|chr15 (15228006-15228132) | |
| 856-960, gnl|echTel1|scaffold_289752 (10524-10390) | |
| 856-960, gnl|fr1|chrUn (71817610-71817486) | |
| 856-960, gnl|galGal2|chr15 (1488067-1488194) | |
| 856-960, gnl|hg17|chr12 (132030951-132031085) | |
| 856-960, gnl|Hg17|chr12 (132031080-132030976) | |
| 856-960, gnl|mm7|chr5 (109334768-109334619) | |
| 856-960, gnl|Mm7|chr5 (109334638-109334741) | |
| 856-960, gnl|monDom2|scaffold_54 (1983631-1983759) | |
| 856-960, gnl|oryCun1|scaffold_134675 (646-503) | |
| 856-960, gnl|panTro1|chr10 (134891933-134892067) | |
| 856-960, gnl|rheMac2|chr11 (134141630-134141778) | |
| 856-960, gnl|rn3|chr12 (46522796-46522927) | |
| 856-960, gnl|tetNig1|chr12 (10802644-10802523) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nms (0.213858) | |
| nco (0.161734) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.213858) | |
| nco (0.161734) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) |