Ss1.1-Ova1-OVRM10025G10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTTCCTCTTTCCAGTGCCCAGTTTTCGTCCACTCTTCTTCGCGGCCGGTAGATTTCTT CCCTCTTCAGACCGAGACAGCTTGTCGCTGCTGAGATTTTTCCTGCTGCTGTTGCTGCTG CCACTCTCGCCGCCACCGCCACTGGGCTCATTTGCCCCGACCCCTTCCCACTGCCCCGAC CCCAACCCCACACAAGATGTCAGAGGATCTAGCAAAGCAGCTGGCAAGCTACAAAGCTCA ACTCCAACAAGTTGAAGCTGCTCTCTCTGGAAATGGAGAAAATGAAGATTTGCTAAAATT AAAGAAAGATTTACAGGAAGTTATAGAATTAACCAAAGACCTTCTGTCAACTCAACCTTC TGAAACTCTTGCAAGTTCAGACAGTTTTGCTTCTACTCAGCCCACACATTCGTGGAAAGT AGGAGACAAGTGTATGGCAATCTGGAGTGAAGATGGACAGTGTTATGAAGCGGAGATTGA GGAGATAGATGAAGAAAACGGCACCGCTGCAATCACCTTTGCTGGCTATGGCAATGCTGA AGTGACTCCACTGTTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCAAAGGAGGACAG TGGCAGCAAACCCATGTCAAAAAAAGAAATGATTGCCCAGCAGCGTGAATATAAAAAGAA GAAAGCTTTGAAAAAAGCACAGAGAATAAAAGAACTTGAGCAGGAAAGAGAAGACCAGAA GGTGAAATGGCAACAGTTCAACAATAGAGCCTATTCTAAAAATAAAAAAGGCCAGGTAAA GAGGAGTATTTTTGCTTCACCTGAGAGTGTAACTGGCAAAGTTGGAGTTGGAACATGTGG AATTGCTGATAAACCTATGACACAATATCAAGATACCTCCAAATACAATGTTAGGCATTT GATGCCTCAATAATCAGAAAAACTGTTGGATTTCATCTCTGCAGGGCTTTACATTTACCT TTTTATCCTTATATTTTTCTAAAGGTAAATTATTTGTTAGATGAGTAAGGAAGATACCAT TGTCGTCATTATTTGACTTCAATAGAATGAAACTTGAAGAAATTGTATTTGATAACTGCT ATTCATTTAAACTTTTTTCATTACTACTACCACAGTTTCCTGGAAGTTTCTTGGATAAAG CAACTTTTCTAGGTAGATGCTGCGTAAATACAGCACTTAGATGAATTATTGATCTTCCTA ATATCAGGCCCCCACTTAGTGGATGACATTTACTTTTTGTAAAGTCCTAACTGGGAATTT TCAGATGCTTTGACCTTGCCACATACTCTAGCAATTCACTGGGACATCAAGGCAGAACAC CAACCTGCTGAAGTGAATTTCTGTTAATTTTTTTATATTCAGCATAAACCTAGCTCTTGC CCATTTAAGCCTAAAGTAGTAGTAATGGCAAAGTTTGTTTTGATGTTTTTCTTGATAACT TGTTTCCTAAGCCTATTAGGCCGTCTCTAAAATTGACCCAGCTCTTTATTTTTCATTGAA TTTTAGTTTTATGTAACAAACCATGTTTAGGACCAGCTACCTGTTCTAATGTTTTTGGTT TGGTTTTTGGGTTTTTTTGTTTGTATGTTTGCTTTTCTCCTGTGTTGATTTTCACTTATG ATAGTGGTACCATTTTTTGGATGTGTAATGTTTATATGAGAAAACAAAAAGCTGATGTAT AGCCCTGTATACAGTGTAGATACTATTTTTGTAAAAAAAGAAAACAAACCCAAGGCTAAA TTAATGAACAAGAGTACTGAGTGTTTCATCATTAAATTTTTTCTGTATTTCTTGTGCATT AATCTGGCCATAATTTCCCTGTATATTATGTTCATGTAGCTGAGTTTGTAATTTTTGTTA ACTAGATCAGGTTGTCAGCATTTGTTGGTTATAAGTGAACATCACAATTTTCCCCAGTTG AGTTTAAGCCAAATATGTGCATAGAAAAGGGTATTCCTGCTAATGGAAGATGGAGATTTT TAGGATGTGTTAATTCAGTTTTTGTATGTTTAACTTTTATTAAATAAAGTGTTTTTAAAA TCAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTTCCTCTTTCCAGTGCCCAGTTTTCGTCCACTCTTCTTCGCGGCCGGTAGATTTCTT CCCTCTTCAGACCGAGACAGCTTGTCGCTGCTGAGATTTTTCCTGCTGCTGTTGCTGCTG CCACTCTCGCCGCCACCGCCACTGGGCTCATTTGCCCCGACCCCTTCCCACTGCCCCGAC CCCAACCCCACACAAGATGTCAGAGGATCTAGCAAAGCAGCTGGCAAGCTACAAAGCTCA ACTCCAACAAGTTGAAGCTGCTCTCTCTGGAAATGGAGAAAATGAAGATTTGCTAAAATT AAAGAAAGATTTACAGGAAGTTATAGAATTAACCAAAGACCTTCTGTCAACTCAACCTTC TGAAACTCTTGCAAGTTCAGACAGTTTTGCTTCTACTCAGCCCACACATTCGTGGAAAGT AGGAGACAAGTGTATGGCAATCTGGAGTGAAGATGGACAGTGTTATGAAGCGGAGATTGA GGAGATAGATGAAGAAAACGGCACCGCTGCAATCACCTTTGCTGGCTATGGCAATGCTGA AGTGACTCCACTGTTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCAAAGGAGGACAG TGGCAGCAAACCCATGTCAAAAAAAGAAATGATTGCCCAGCAGCGTGAATATAAAAAGAA GAAAGCTTTGAAAAAAGCACAGAGAATAAAAGAACTTGAGCAGGAAAGAGAAGACCAGAA GGTGAAATGGCAACAGTTCAACAATAGAGCCTATTCTAAAAATAAAAAAGGCCAGGTAAA GAGGAGTATTTTTGCTTCACCTGAGAGTGTAACTGGCAAAGTTGGAGTTGGAACATGTGG AATTGCTGATAAACCTATGACACAATATCAAGATACCTCCAAATACAATGTTAGGCATTT GATGCCTCAATAATCAGAAAAACTGTTGGATTTCATCTCTGCAGGGCTTTACATTTACCT TTTTATCCTTATATTTTTCTAAAGGTAAATTATTTGTTAGATGAGTAAGGAAGATACCAT TGTCGTCATTATTTGACTTCAATAGAATGAAACTTGAAGAAATTGTATTTGATAACTGCT ATTCATTTAAACTTTTTTCATTACTACTACCACAGTTTCCTGGAAGTTTCTTGGATAAAG CAACTTTTCTAGGTAGATGCTGCGTAAATACAGCACTTAGATGAATTATTGATCTTCCTA ATATCAGGCCCCCACTTAGTGGATGACATTTACTTTTTGTAAAGTCCTAACTGGGAATTT TCAGATGCTTTGACCTTGCCACATACTCTAGCAATTCACTGGGACATCAAGGCAGAACAC CAACCTGCTGAAGTGAATTTCTGTTAATTTTTTTATATTCAGCATAAACCTAGCTCTTGC CCATTTAAGCCTAAAGTAGTAGTAATGGCAAAGTTTGTTTTGATGTTTTTCTTGATAACT TGTTTCCTAAGCCTATTAGGCCGTCTCTAAAATTGACCCAGCTCTTTATTTTTCATTGAA TTTTAGTTTTATGTAACAAACCATGTTTAGGACCAGCTACCTGTTCTAATGTTTTTGGTT TGGTTTTTGGGTTTTTTTGTTTGTATGTTTGCTTTTCTCCTGTGTTGATTTTCACTTATG ATAGTGGTACCATTTTTTGGATGTGTAATGTTTATATGAGAAAACAAAAAGCTGATGTAT AGCCCTGTATACAGTGTAGATACTATTTTTGTAAAAAAAGAAAACAAACCCAAGGCTAAA TTAATGAACAAGAGTACTGAGTGTTTCATCATTAAATTTTTTCTGTATTTCTTGTGCATT AATCTGGCCATAATTTCCCTGTATATTATGTTCATGTAGCTGAGTTTGTAATTTTTGTTA ACTAGATCAGGTTGTCAGCATTTGTTGGTTATAAGTGAACATCACAATTTTCCCCAGTTG AGTTTAAGCCAAATATGTGCATAGAAAAGGGTATTCCTGCTAATGGAAGATGGAGATTTT TAGGATGTGTTAATTCAGTTTTTGTATGTTTAACTTTTATTAAATAAAGTGTTTTTAAAA TCAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 191-1815, - strand, RNAz p=0.960276 | |
| 509-626, - strand, RNAz p=0.619137 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 191-1815, - strand, RNAz p=0.960276 | |
| 509-626, - strand, RNAz p=0.619137 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 191-321, gnl|bosTau2|chr26 (19416169-19416300) | |
| 191-321, gnl|canFam2|chr28 (24671904-24672031) | |
| 191-321, gnl|danRer3|chr17 (22267173-22267300) | |
| 191-321, gnl|dasNov1|scaffold_33630 (12924-13051) | |
| 191-321, gnl|echTel1|scaffold_242362 (6115-5993) | |
| 191-321, gnl|fr1|chrUn (8700996-8700869) | |
| 191-321, gnl|galGal2|chr6 (24947447-24947569) | |
| 191-321, gnl|hg17|chr10 (112053211-112053338) | |
| 191-321, gnl|Hg17|chr10 (112053341-112053210) | |
| 191-321, gnl|loxAfr1|scaffold_5717 (98028-98155) | |
| 191-321, gnl|mm7|chr19 (53291225-53291352) | |
| 191-321, gnl|Mm7|chr19 (53291355-53291224) | |
| 191-321, gnl|monDom2|scaffold_14 (53013727-53013600) | |
| 191-321, gnl|oryCun1|scaffold_193404 (8787-8660) | |
| 191-321, gnl|panTro1|chr8 (113963337-113963464) | |
| 191-321, gnl|rheMac2|chr9 (109994100-109994227) | |
| 191-321, gnl|rn3|chr1 (259817148-259817275) | |
| 191-321, gnl|tetNig1|chr17 (7093721-7093848) | |
| 191-321, gnl|xenTro1|scaffold_158 (1125724-1125851) | |
| 460-626, gnl|bosTau2|chr26 (19422051-19422217) | |
| 460-626, gnl|canFam2|chr28 (24666181-24666348) | |
| 460-626, gnl|danRer3|chr17 (22264318-22264482) | |
| 460-626, gnl|dasNov1|scaffold_115279 (248-89) | |
| 460-626, gnl|echTel1|scaffold_312036 (84071-84231) | |
| 460-626, gnl|fr1|chrUn (8701692-8701530) | |
| 460-626, gnl|galGal2|chr6 (24942577-24942744) | |
| 460-626, gnl|hg17|chr10 (112047308-112047475) | |
| 460-626, gnl|Hg17|chr10 (112047476-112047310) | |
| 460-626, gnl|loxAfr1|scaffold_5717 (91853-92020) | |
| 460-626, gnl|mm7|chr19 (53285477-53285644) | |
| 460-626, gnl|Mm7|chr19 (53285645-53285479) | |
| 460-626, gnl|monDom2|scaffold_14 (53019455-53019288) | |
| 460-626, gnl|oryCun1|scaffold_110233 (4925-4769) | |
| 460-626, gnl|panTro1|chr8 (113957419-113957585) | |
| 460-626, gnl|rheMac2|chr9 (109988211-109988378) | |
| 460-626, gnl|rn3|chr1 (259811398-259811565) | |
| 460-626, gnl|tetNig1|chr17 (7092751-7092913) | |
| 460-626, gnl|xenTro1|scaffold_158 (1123455-1123619) | |
| 1124-2042, gnl|bosTau2|chr26 (19425315-19426218) | |
| 1124-2042, gnl|Hg17|chr10 (112043659-112042792) | |
| 1124-2042, gnl|Mm7|chr19 (53282184-53281321) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 191-321, gnl|bosTau2|chr26 (19416169-19416300) | |
| 191-321, gnl|canFam2|chr28 (24671904-24672031) | |
| 191-321, gnl|danRer3|chr17 (22267173-22267300) | |
| 191-321, gnl|dasNov1|scaffold_33630 (12924-13051) | |
| 191-321, gnl|echTel1|scaffold_242362 (6115-5993) | |
| 191-321, gnl|fr1|chrUn (8700996-8700869) | |
| 191-321, gnl|galGal2|chr6 (24947447-24947569) | |
| 191-321, gnl|hg17|chr10 (112053211-112053338) | |
| 191-321, gnl|Hg17|chr10 (112053341-112053210) | |
| 191-321, gnl|loxAfr1|scaffold_5717 (98028-98155) | |
| 191-321, gnl|mm7|chr19 (53291225-53291352) | |
| 191-321, gnl|Mm7|chr19 (53291355-53291224) | |
| 191-321, gnl|monDom2|scaffold_14 (53013727-53013600) | |
| 191-321, gnl|oryCun1|scaffold_193404 (8787-8660) | |
| 191-321, gnl|panTro1|chr8 (113963337-113963464) | |
| 191-321, gnl|rheMac2|chr9 (109994100-109994227) | |
| 191-321, gnl|rn3|chr1 (259817148-259817275) | |
| 191-321, gnl|tetNig1|chr17 (7093721-7093848) | |
| 191-321, gnl|xenTro1|scaffold_158 (1125724-1125851) | |
| 460-626, gnl|bosTau2|chr26 (19422051-19422217) | |
| 460-626, gnl|canFam2|chr28 (24666181-24666348) | |
| 460-626, gnl|danRer3|chr17 (22264318-22264482) | |
| 460-626, gnl|dasNov1|scaffold_115279 (248-89) | |
| 460-626, gnl|echTel1|scaffold_312036 (84071-84231) | |
| 460-626, gnl|fr1|chrUn (8701692-8701530) | |
| 460-626, gnl|galGal2|chr6 (24942577-24942744) | |
| 460-626, gnl|hg17|chr10 (112047308-112047475) | |
| 460-626, gnl|Hg17|chr10 (112047476-112047310) | |
| 460-626, gnl|loxAfr1|scaffold_5717 (91853-92020) | |
| 460-626, gnl|mm7|chr19 (53285477-53285644) | |
| 460-626, gnl|Mm7|chr19 (53285645-53285479) | |
| 460-626, gnl|monDom2|scaffold_14 (53019455-53019288) | |
| 460-626, gnl|oryCun1|scaffold_110233 (4925-4769) | |
| 460-626, gnl|panTro1|chr8 (113957419-113957585) | |
| 460-626, gnl|rheMac2|chr9 (109988211-109988378) | |
| 460-626, gnl|rn3|chr1 (259811398-259811565) | |
| 460-626, gnl|tetNig1|chr17 (7092751-7092913) | |
| 460-626, gnl|xenTro1|scaffold_158 (1123455-1123619) | |
| 1124-2042, gnl|bosTau2|chr26 (19425315-19426218) | |
| 1124-2042, gnl|Hg17|chr10 (112043659-112042792) | |
| 1124-2042, gnl|Mm7|chr19 (53282184-53281321) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| liv (0.438853) | |
| ova (0.387397) | |
| elu (0.385356) | |
| cte (0.29274) | |
| ssp (0.271039) | |
| nep (0.183925) | |
| fty (0.17584) | |
| nje (0.16592) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| kid (0.129735) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| cbl (0.114797) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.438853) | |
| ova (0.387397) | |
| elu (0.385356) | |
| cte (0.29274) | |
| ssp (0.271039) | |
| nep (0.183925) | |
| fty (0.17584) | |
| nje (0.16592) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| kid (0.129735) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| cbl (0.114797) |