Non-Coding RNA Search

Ss1.1-Ova1-OVRM10027B11.5

Sequence:


               
               TCCTCTCAGAGCTACTATGGTTGAGCCGGGGACTTTGAACCTCAATAACGAGGTTGTGAA
GATGAGAAAAGAAGTGAAGAGAATCCGAGTTTTGGTTATTCGAAAACTTGTGAGGAGTGT
TGGCAGATTGAAGTCAAAAAAGGGCACCGAAGATGCACTGTTAAAAAACCAAAGACGAGC
ACAACGGCTGCTCGAAGAAATCCATGCCATGAAGGAGTTGAAACCTGATATAGTAACTAA
ATCTGCCCTTGGTGATGATATCAACTTTGAAAAAATCTGCAAAAAGCCTGATTCTACCGC
AACTGAAAGAGCAATTGCCAGACTAGCAGTTCATCCTCTTCTGAAGAAAAAAATTGATGT
GCTAAAAGCTGCTGTCAAAGCCTTTAAAGATGCAAGACAAAATGTTGTTGAAGTTAAGTC
ATCAAAGAATGCTTCAGAAGAAAATCATTCCAAGGACACTTTGTGTTCAAATGATGATGC
CAGTAAGTTACAGCATGAAGGAACTATTATTAGTGAGCGAGAAGAGAAAAAAGCCAAAAT
ATTGGCAAAGAAACCAATAAATAATTCAAAAGAAAAAATAGCCAAGATGGAACATGGATC
CAGAGCAGTGGACATTCCAAATTCTCTGTCAAAGCCTTCTGAGAAGGTTTCTACAGTTCC
CTCTGAACCCCAGAAGACATCTGCTGACCCCAAAGTGAAAACATTAAGTCAAACCAAAAA
GAAGAAAGAGTCCGGTAGCTCACCTGGTAGTAACAGTGATGGAGAAGAATTACATGAAGA
AGAGAAGGAGTATTTTGATGATAGCACAGAAGAAAGGTTTTACAAGCAGTCTTCCATGTC
TGAGGATAGTGATAGTGGTGACGACTTCTTCATTGGGAAGGTCAAACGGACACGAAAGAA
GGAAAGCCATTGTCATTTTTCAGTCAAGGAACAAAACCATCGCAAAAAATTGAAACCTGA
TGAAGATGTGCTTGAAACCCATCAGGATATAAGAAATAATAAAAGCAAGCCACATACAGA
AGCAAGGAAGTTTGAATCAGTGTTTTTCCATTCTTTATCTGAATCTAAAAGCTCTGAAAG
AAGTTACAGAGAACAAGTTCCAAAAAGCAAAACCTCAGGTTCTCAGCAAATTGAACCACA
GATCAAGAATCAGCTTAATAAGAGTGCACAAAGAGGATTTGAAAATACAAAACAGAAATC
ACAGCTGCCTCTTCATCCTTCATGGGAAGCAAGCCGGAGGCGAAAAGAACAGCAATCCAA
AATTGCTGTGTTTCAGGGGAAAAAAATTACCTTTGATGATTGATTAGTACTATTTTTTTA
TGAACTTTTCTATCTGAAAATTGTTTTTCCTTTTTCTTTTTTAACCAGCTCTTTATTTAA
ATTTGTATGTGAATAGATCTCTTTGAATGGGTTATAGAGATAAGTTTGTCTTTTTCTTTT
AAGGTGTTCAAGTTAAGTTTAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTCTCAGAGCTACTATGGTTGAGCCGGGGACTTTGAACCTCAATAACGAGGTTGTGAA
GATGAGAAAAGAAGTGAAGAGAATCCGAGTTTTGGTTATTCGAAAACTTGTGAGGAGTGT
TGGCAGATTGAAGTCAAAAAAGGGCACCGAAGATGCACTGTTAAAAAACCAAAGACGAGC
ACAACGGCTGCTCGAAGAAATCCATGCCATGAAGGAGTTGAAACCTGATATAGTAACTAA
ATCTGCCCTTGGTGATGATATCAACTTTGAAAAAATCTGCAAAAAGCCTGATTCTACCGC
AACTGAAAGAGCAATTGCCAGACTAGCAGTTCATCCTCTTCTGAAGAAAAAAATTGATGT
GCTAAAAGCTGCTGTCAAAGCCTTTAAAGATGCAAGACAAAATGTTGTTGAAGTTAAGTC
ATCAAAGAATGCTTCAGAAGAAAATCATTCCAAGGACACTTTGTGTTCAAATGATGATGC
CAGTAAGTTACAGCATGAAGGAACTATTATTAGTGAGCGAGAAGAGAAAAAAGCCAAAAT
ATTGGCAAAGAAACCAATAAATAATTCAAAAGAAAAAATAGCCAAGATGGAACATGGATC
CAGAGCAGTGGACATTCCAAATTCTCTGTCAAAGCCTTCTGAGAAGGTTTCTACAGTTCC
CTCTGAACCCCAGAAGACATCTGCTGACCCCAAAGTGAAAACATTAAGTCAAACCAAAAA
GAAGAAAGAGTCCGGTAGCTCACCTGGTAGTAACAGTGATGGAGAAGAATTACATGAAGA
AGAGAAGGAGTATTTTGATGATAGCACAGAAGAAAGGTTTTACAAGCAGTCTTCCATGTC
TGAGGATAGTGATAGTGGTGACGACTTCTTCATTGGGAAGGTCAAACGGACACGAAAGAA
GGAAAGCCATTGTCATTTTTCAGTCAAGGAACAAAACCATCGCAAAAAATTGAAACCTGA
TGAAGATGTGCTTGAAACCCATCAGGATATAAGAAATAATAAAAGCAAGCCACATACAGA
AGCAAGGAAGTTTGAATCAGTGTTTTTCCATTCTTTATCTGAATCTAAAAGCTCTGAAAG
AAGTTACAGAGAACAAGTTCCAAAAAGCAAAACCTCAGGTTCTCAGCAAATTGAACCACA
GATCAAGAATCAGCTTAATAAGAGTGCACAAAGAGGATTTGAAAATACAAAACAGAAATC
ACAGCTGCCTCTTCATCCTTCATGGGAAGCAAGCCGGAGGCGAAAAGAACAGCAATCCAA
AATTGCTGTGTTTCAGGGGAAAAAAATTACCTTTGATGATTGATTAGTACTATTTTTTTA
TGAACTTTTCTATCTGAAAATTGTTTTTCCTTTTTCTTTTTTAACCAGCTCTTTATTTAA
ATTTGTATGTGAATAGATCTCTTTGAATGGGTTATAGAGATAAGTTTGTCTTTTTCTTTT
AAGGTGTTCAAGTTAAGTTTAAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5NVE2_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5NVE2_PONPY

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               916-1080, gnl|bosTau2|chr7 (24589397-24589561)
               

               
               916-1080, gnl|Hg17|chr5 (121384232-121384396)
               

               
               916-1080, gnl|Mm7|chr18 (52866853-52867017)
               


               
               1116-1463, gnl|bosTau2|chr7 (24596257-24596607)
               

               
               1116-1463, gnl|Hg17|chr5 (121390532-121391040)
               

               
               1116-1463, gnl|Mm7|chr18 (52868486-52868840)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               916-1080, gnl|bosTau2|chr7 (24589397-24589561)
               

               
               916-1080, gnl|Hg17|chr5 (121384232-121384396)
               

               
               916-1080, gnl|Mm7|chr18 (52866853-52867017)
               


               
               1116-1463, gnl|bosTau2|chr7 (24596257-24596607)
               

               
               1116-1463, gnl|Hg17|chr5 (121390532-121391040)
               

               
               1116-1463, gnl|Mm7|chr18 (52868486-52868840)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ski (0.146735)
               

               
               nca (0.136874)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               spc (0.113366)

	916-1080, gnl\|bosTau2\|chr7 (24589397-24589561)
	916-1080, gnl\|Hg17\|chr5 (121384232-121384396)
	916-1080, gnl\|Mm7\|chr18 (52866853-52867017)

	1116-1463, gnl\|bosTau2\|chr7 (24596257-24596607)
	1116-1463, gnl\|Hg17\|chr5 (121390532-121391040)
	1116-1463, gnl\|Mm7\|chr18 (52868486-52868840)