Non-Coding RNA Search

Ss1.1-Ova1-OVRM10027D11.5

Sequence:


               
               CATCTATAATCCAGATAAATCTGAAAAGATATAGATCCATCCATATGTGTTTTTCATAGA
TTTCACTTTTGAGTAGATCTTCATAGTTGAATATTTCCACTCTTCCCCCCCCACTTTAAT
ATATCATAGTATTACTCTTATTTTAAAAGTCACTATATTCTCACATGACATAATTTGGCA
TATCATTATAGTGATATAAGGAAGTAAGTTATCTCCCATTTTCAATTACGCAGTCAGGTC
TTGGTTAGTTTTGGGGCCTACCCAGACTTTTGGGACATGAGGATTTAAAATGTGTAATTT
GCCTAAGTGAAGTCTGCTTTAATGTGGTTTTAATAAAATATTTTCATATCGACCCCAAAT
CACACTTAAACTTTGTCCTTACATTAAGATCAGTATTCTTTCTTGATATTCTTCTAGATG
AGTATAATTCCTTCAGTGTTAGAGTGGCCTGTAGCAATATGGATCAAGATTGTAGCTCCA
ACGGAGAAATCTTGTGCAGAAGCGTATTTTGAGGAAGAATGGTATTTGAAGGGAGAGAGG
GAAATGATAAATCTCTGTTACTGCATAATATTTATGTACATGTAAGTTAAAGGGCTTGAG
ATCGTAGTTCAATTAAAAGCAGATTTCCTGGGAGTTTCTTGGTGGCTCAGTGGGTTAAGG
ATCTGGCATTGTCACTGCTGTGGCTGTGGTTACTGCTCAGGTACAGGTTTGATCCCTGGC
CTGGGAACTCCCATATGCCACGAGTAGCTTAAAAAAAAAAAAAAAAAGATTGCCTTTGTG
CGTGGCAGGGGGAGGAGGGATTGTGCTTAACATGAAGATGAGGGAAAAAGTGATTAACAT
ATTAGGGGGTATTGGCAAAATTGGTCAATATGTTAAAATTATGGCATTCTTTGCCCCTTA
AAATAAATTTGTGTAAAATATAGAGAACATTTGTTGAAGACTGATTTTCCACAATGATTA
TAGTGATATGTTAAATCTAAAATTAGAATTTAAAACTCCTTTTAGGTCATTATTTCCTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCTATAATCCAGATAAATCTGAAAAGATATAGATCCATCCATATGTGTTTTTCATAGA
TTTCACTTTTGAGTAGATCTTCATAGTTGAATATTTCCACTCTTCCCCCCCCACTTTAAT
ATATCATAGTATTACTCTTATTTTAAAAGTCACTATATTCTCACATGACATAATTTGGCA
TATCATTATAGTGATATAAGGAAGTAAGTTATCTCCCATTTTCAATTACGCAGTCAGGTC
TTGGTTAGTTTTGGGGCCTACCCAGACTTTTGGGACATGAGGATTTAAAATGTGTAATTT
GCCTAAGTGAAGTCTGCTTTAATGTGGTTTTAATAAAATATTTTCATATCGACCCCAAAT
CACACTTAAACTTTGTCCTTACATTAAGATCAGTATTCTTTCTTGATATTCTTCTAGATG
AGTATAATTCCTTCAGTGTTAGAGTGGCCTGTAGCAATATGGATCAAGATTGTAGCTCCA
ACGGAGAAATCTTGTGCAGAAGCGTATTTTGAGGAAGAATGGTATTTGAAGGGAGAGAGG
GAAATGATAAATCTCTGTTACTGCATAATATTTATGTACATGTAAGTTAAAGGGCTTGAG
ATCGTAGTTCAATTAAAAGCAGATTTCCTGGGAGTTTCTTGGTGGCTCAGTGGGTTAAGG
ATCTGGCATTGTCACTGCTGTGGCTGTGGTTACTGCTCAGGTACAGGTTTGATCCCTGGC
CTGGGAACTCCCATATGCCACGAGTAGCTTAAAAAAAAAAAAAAAAAGATTGCCTTTGTG
CGTGGCAGGGGGAGGAGGGATTGTGCTTAACATGAAGATGAGGGAAAAAGTGATTAACAT
ATTAGGGGGTATTGGCAAAATTGGTCAATATGTTAAAATTATGGCATTCTTTGCCCCTTA
AAATAAATTTGTGTAAAATATAGAGAACATTTGTTGAAGACTGATTTTCCACAATGATTA
TAGTGATATGTTAAATCTAAAATTAGAATTTAAAACTCCTTTTAGGTCATTATTTCCTAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               448-565, + strand, RNAz p=0.839258

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               448-565, + strand, RNAz p=0.839258

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               156-612, gnl|bosTau2|chr6 (34750763-34751218)
               

               
               156-612, gnl|Hg17|chr4 (54768398-54767957)
               


               
               812-1018, gnl|bosTau2|chr6 (34751263-34751468)
               

               
               812-1018, gnl|Hg17|chr4 (54767909-54767675)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               156-612, gnl|bosTau2|chr6 (34750763-34751218)
               

               
               156-612, gnl|Hg17|chr4 (54768398-54767957)
               


               
               812-1018, gnl|bosTau2|chr6 (34751263-34751468)
               

               
               812-1018, gnl|Hg17|chr4 (54767909-54767675)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	156-612, gnl\|bosTau2\|chr6 (34750763-34751218)
	156-612, gnl\|Hg17\|chr4 (54768398-54767957)

	812-1018, gnl\|bosTau2\|chr6 (34751263-34751468)
	812-1018, gnl\|Hg17\|chr4 (54767909-54767675)