Ss1.1-Ova1-OVRM10028A07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGCCAGGAGGGGCTCCAGTACCAGCCGGGGGACCACATAGGCATCTGCCCGCCCAACC GGCCAGGCCTCGTGGAGGCGCTGCTGAGCCGTGTGGAGGACCCGCCACCGCCCACCGAGC CTGTGGCAGTGGAGCAGCTAGAGAAGGGCAGCCCTGGTGGCCCTCCTCCCAGCTGGGTGC GGGACCCCCGGCTGCCCCCGTGCACACTGCGCCAGGCTCTCACCTTCTTCCTGGACATCA CCTCCCCGCCCAGCCCTCGGCTTCTTCGGCTGCTCAGCACCCTGGCTGAAGAGCCCAGCG AACAGCAGGAGCTTGAGACCCTCAGCCAGGACCCCCGGCGCTATGAGGAGTGGAAGTGGT TCCGCTGCCCCACGCTGCTGGAGGTGCTGGAGCAGTTTCCATCCGTGGCACTGCCCGCCC CGCTGCTCCTCACCCAGCTGCCTCTGCTCCAGCCCCGGTACTACTCCGTGAGCTCGGCGC CCAGCACCTACCCGGGAGAGATCCACCTCACAGTTGCAGTGCTGGCCTACAGGACCCAAG ATGGGCTGGGCCCCCTGCACTATGGAGTCTGCTCCACGTGGCTGAGCCAGCTCAAGCCTG GAGACCCTGTACCCTGCTTCATCAGGGCGGCTCCCTCCTTCCGGCTGCCACCTGATCCCA GCTTGCCCTGCATCCTGGTGGGCCCAGGCACAGGCATTGCCCCCTTCCGGGGATTCTGGC AGGAGCGGCTGCATGACATTGAGAGCAAAGGGCTGCAGCCCGCCCCCATGACCTTGGTGT TCGGCTGCCGATGCTCCCAGCTCGACCATCTCTACCGCGACGAGGTGCAGGATGCCCAGC AGCGCGGGGTGTTTGGACGCGTCCTCACCGCCTTCTCCCGGGAACCCGACAGCCCTAAGA CCTACGTGCAGGACATCCTGAGGACGGAGCTGGCTGCTGAGGTGCACCGCGTGCTGTGCC TCGAGCGGGGCCACATGTTTGTCTGCGGCGACGTCACCATGGCAACCAGCGTCCTGCAGA CGGTGCAGCGCATCTTGGCGACGGAGGGCAACATGGAGCTGGACGAGGCCGGCGACGTCA TCGGCGTGCTGCGGGATCAGCAACGCTATCACGAGGACATTTTCGGGCTCACGCTGCGCA CCCAGGAGGTGACAAGCCGCATACGCACCCAGAGCTTTTCCCTGCAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGCCAGGAGGGGCTCCAGTACCAGCCGGGGGACCACATAGGCATCTGCCCGCCCAACC GGCCAGGCCTCGTGGAGGCGCTGCTGAGCCGTGTGGAGGACCCGCCACCGCCCACCGAGC CTGTGGCAGTGGAGCAGCTAGAGAAGGGCAGCCCTGGTGGCCCTCCTCCCAGCTGGGTGC GGGACCCCCGGCTGCCCCCGTGCACACTGCGCCAGGCTCTCACCTTCTTCCTGGACATCA CCTCCCCGCCCAGCCCTCGGCTTCTTCGGCTGCTCAGCACCCTGGCTGAAGAGCCCAGCG AACAGCAGGAGCTTGAGACCCTCAGCCAGGACCCCCGGCGCTATGAGGAGTGGAAGTGGT TCCGCTGCCCCACGCTGCTGGAGGTGCTGGAGCAGTTTCCATCCGTGGCACTGCCCGCCC CGCTGCTCCTCACCCAGCTGCCTCTGCTCCAGCCCCGGTACTACTCCGTGAGCTCGGCGC CCAGCACCTACCCGGGAGAGATCCACCTCACAGTTGCAGTGCTGGCCTACAGGACCCAAG ATGGGCTGGGCCCCCTGCACTATGGAGTCTGCTCCACGTGGCTGAGCCAGCTCAAGCCTG GAGACCCTGTACCCTGCTTCATCAGGGCGGCTCCCTCCTTCCGGCTGCCACCTGATCCCA GCTTGCCCTGCATCCTGGTGGGCCCAGGCACAGGCATTGCCCCCTTCCGGGGATTCTGGC AGGAGCGGCTGCATGACATTGAGAGCAAAGGGCTGCAGCCCGCCCCCATGACCTTGGTGT TCGGCTGCCGATGCTCCCAGCTCGACCATCTCTACCGCGACGAGGTGCAGGATGCCCAGC AGCGCGGGGTGTTTGGACGCGTCCTCACCGCCTTCTCCCGGGAACCCGACAGCCCTAAGA CCTACGTGCAGGACATCCTGAGGACGGAGCTGGCTGCTGAGGTGCACCGCGTGCTGTGCC TCGAGCGGGGCCACATGTTTGTCTGCGGCGACGTCACCATGGCAACCAGCGTCCTGCAGA CGGTGCAGCGCATCTTGGCGACGGAGGGCAACATGGAGCTGGACGAGGCCGGCGACGTCA TCGGCGTGCTGCGGGATCAGCAACGCTATCACGAGGACATTTTCGGGCTCACGCTGCGCA CCCAGGAGGTGACAAGCCGCATACGCACCCAGAGCTTTTCCCTGCAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 629-747, - strand, RNAz p=0.912336 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 629-747, - strand, RNAz p=0.912336 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 2-159, gnl|bosTau2|chr4 (64580500-64580343) | |
| 2-159, gnl|canFam2|chr16 (18015798-18015993) | |
| 2-159, gnl|danRer3|chrUn (117084115-117083924) | |
| 2-159, gnl|dasNov1|scaffold_19002 (58811-59006) | |
| 2-159, gnl|echTel1|scaffold_316221 (38413-38608) | |
| 2-159, gnl|fr1|chrUn (222102012-222102210) | |
| 2-159, gnl|galGal2|chr15 (11123140-11123342) | |
| 2-159, gnl|hg17|chr7 (150144129-150144324) | |
| 2-159, gnl|Hg17|chr7 (150144167-150144324) | |
| 2-159, gnl|loxAfr1|scaffold_126732 (4617-4422) | |
| 2-159, gnl|mm7|chr5 (23420661-23420856) | |
| 2-159, gnl|Mm7|chr5 (23420699-23420856) | |
| 2-159, gnl|monDom2|scaffold_7 (11146076-11146271) | |
| 2-159, gnl|oryCun1|scaffold_204516 (87105-87300) | |
| 2-159, gnl|panTro1|chr6_random (16783480-16783285) | |
| 2-159, gnl|rheMac2|chr3 (187955899-187956094) | |
| 2-159, gnl|rn3|chr4 (6163013-6162818) | |
| 2-159, gnl|tetNig1|chr12 (4523861-4524062) | |
| 2-159, gnl|xenTro1|scaffold_1263 (34970-35156) | |
| 325-550, gnl|bosTau2|chr4 (64579300-64579074) | |
| 325-550, gnl|Hg17|chr7 (150145328-150145552) | |
| 325-550, gnl|Mm7|chr5 (23421853-23422078) | |
| 342-546, gnl|bosTau2|chr17 (33173061-33173265) | |
| 342-546, gnl|Hg17|chr12 (116128154-116127950) | |
| 342-546, gnl|Mm7|chr5 (117172128-117172332) | |
| 629-751, gnl|bosTau2|chr4 (64577868-64577746) | |
| 629-751, gnl|Hg17|chr7 (150147087-150147209) | |
| 629-751, gnl|Mm7|chr5 (23423018-23423140) | |
| 861-1095, gnl|bosTau2|chr17 (33178676-33178909) | |
| 861-1095, gnl|Hg17|chr12 (116120811-116120599) | |
| 861-1095, gnl|Mm7|chr5 (117178570-117178820) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-159, gnl|bosTau2|chr4 (64580500-64580343) | |
| 2-159, gnl|canFam2|chr16 (18015798-18015993) | |
| 2-159, gnl|danRer3|chrUn (117084115-117083924) | |
| 2-159, gnl|dasNov1|scaffold_19002 (58811-59006) | |
| 2-159, gnl|echTel1|scaffold_316221 (38413-38608) | |
| 2-159, gnl|fr1|chrUn (222102012-222102210) | |
| 2-159, gnl|galGal2|chr15 (11123140-11123342) | |
| 2-159, gnl|hg17|chr7 (150144129-150144324) | |
| 2-159, gnl|Hg17|chr7 (150144167-150144324) | |
| 2-159, gnl|loxAfr1|scaffold_126732 (4617-4422) | |
| 2-159, gnl|mm7|chr5 (23420661-23420856) | |
| 2-159, gnl|Mm7|chr5 (23420699-23420856) | |
| 2-159, gnl|monDom2|scaffold_7 (11146076-11146271) | |
| 2-159, gnl|oryCun1|scaffold_204516 (87105-87300) | |
| 2-159, gnl|panTro1|chr6_random (16783480-16783285) | |
| 2-159, gnl|rheMac2|chr3 (187955899-187956094) | |
| 2-159, gnl|rn3|chr4 (6163013-6162818) | |
| 2-159, gnl|tetNig1|chr12 (4523861-4524062) | |
| 2-159, gnl|xenTro1|scaffold_1263 (34970-35156) | |
| 325-550, gnl|bosTau2|chr4 (64579300-64579074) | |
| 325-550, gnl|Hg17|chr7 (150145328-150145552) | |
| 325-550, gnl|Mm7|chr5 (23421853-23422078) | |
| 342-546, gnl|bosTau2|chr17 (33173061-33173265) | |
| 342-546, gnl|Hg17|chr12 (116128154-116127950) | |
| 342-546, gnl|Mm7|chr5 (117172128-117172332) | |
| 629-751, gnl|bosTau2|chr4 (64577868-64577746) | |
| 629-751, gnl|Hg17|chr7 (150147087-150147209) | |
| 629-751, gnl|Mm7|chr5 (23423018-23423140) | |
| 861-1095, gnl|bosTau2|chr17 (33178676-33178909) | |
| 861-1095, gnl|Hg17|chr12 (116120811-116120599) | |
| 861-1095, gnl|Mm7|chr5 (117178570-117178820) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| ecc (0.115035) |