Ss1.1-Ova1-OVRM10028E05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCGCGGCAGTGGGCGGATCGCGTCGCACAGCGAGGGTCCGCCTCCTCCTCGGCCTGGC CTCAGTAGGTCTGGACGCATCAAGCATGGCCATGTTTTCTGAGCAGGCTGCCCAGAGGGC GCACACTCTGCTGTCCCCACCATCAGCCAGCAACGCCACTTTTGACCGAATCCCCGTGGT GACTTACACCAACTCGTCCCAGCCCTTCCGACTAGGGGAGCGCAGCTTTAACCGGCAGTA TGCCCACATTTATGCCACCCGCCTGGTCCAGATGAGGCCCTTCCTGGTGAGCCGGGCCAG GCAGCGCTGGGGCGGGGGCGTCGTCGTGAAGAAGCTGTGTGAGCTGCAGCCCGGGGAGAA GTGCTGTGTGGTCGGGACCCTCTTCAAGGCCATGCCGCTCCAGCCCTCCATCCTGCGGGA AGTCAGCGAAGAGCACAACCTGCTCCCCCAGCCTCCTCGGAGCAAATACATCCACCCGGA TGACGAGCTGATCTTGGAAGATGAATTGCAGCGCATCAAACTGGAGGGCGCCATTGACGT GTCCAAGCTGGTCACAGGGACGGTCCTGGCCCTGCTGGGCTCCGCGGGGGATGACGGGAA GTTCCTGGTGGAGGACCACTGCTTTGCAGGGCTTGCCCCTCAGAAGCCCACACGCCCCCT CGACACAGACAGGTTTGTGTTGCTGGTGTCTGGTCTGGGCCTGGGTGGAGGCGGGGGTGA GAGCCTGCTGGGCACCCAGCTGCTGGTGGACGTGGTGACGGGGCAGCTTGGAGACGAAGG GGAGCAGTGCAGTGCCGCCCACGTCTCCCGGGTCATCCTCGCCGGGAACCTCCTCAGCCA TAACACCCAGAGCAGAGATTCCATCAACAAGGCCAAGTACCTGACCAAGAAGACGCAGGC AGCCAGCGTGGAGGCCGTCAAGATGCTGGACGAGATCCTCCTGCAGCTGAGTGCCTCCGT GCCCGTGGACGTGATGCCAGGCGAATTTGACCCGACCAACTACACGCTCCCCCAGCAGCC CCTGCACCCCTGCATGTTCCCTCTGGCCACTGCCTACTCCACGCTCCAGCTGGTCACCAA CCCCTACCAGGCCACCATCGATGGAGTCAGGTTCCTGGGCACATCTGGACAGAACGTGGG TGACATCTTCCGGTACAGCGGCATGGAGGATCACCTGGAGATCCTGGAGTGGACCCTGCA AATCCGCCACATCAGCCCCACAGCTCCTGACACCCTAGGTTGCTACCCTTTCTACAAAAC CGACCCGTTCATCTTTCTGGAGTGCCCACACGTCTACTTTTGTGGCAACACCCCCAGCTT TGGCTCTAAAATCATCCGAGGCCCCGAGGACCAGACAGTGCTGTTGGTAGCTGTCCCCGA CTTCAGCTCCACACAGACCGCCTGCCTCGTGAACCTGCGCAGCCTGACCTGCCAGCCCAT CAGCTTCTCAGGCTTCGGGGCAGAGGAGGAGGACCTGGAAAGCCTGGGTCTGGGCCCCTG ACTCACAAAGGCGGCCTTGTCTCAAGAGGCCCTGGCCATTCCTCCCCTGTGGCGTCAGCA CCGTGGCAGCTTTTGCTTTGTAAATAAAGCCTGACTGTTTACTCGCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCGCGGCAGTGGGCGGATCGCGTCGCACAGCGAGGGTCCGCCTCCTCCTCGGCCTGGC CTCAGTAGGTCTGGACGCATCAAGCATGGCCATGTTTTCTGAGCAGGCTGCCCAGAGGGC GCACACTCTGCTGTCCCCACCATCAGCCAGCAACGCCACTTTTGACCGAATCCCCGTGGT GACTTACACCAACTCGTCCCAGCCCTTCCGACTAGGGGAGCGCAGCTTTAACCGGCAGTA TGCCCACATTTATGCCACCCGCCTGGTCCAGATGAGGCCCTTCCTGGTGAGCCGGGCCAG GCAGCGCTGGGGCGGGGGCGTCGTCGTGAAGAAGCTGTGTGAGCTGCAGCCCGGGGAGAA GTGCTGTGTGGTCGGGACCCTCTTCAAGGCCATGCCGCTCCAGCCCTCCATCCTGCGGGA AGTCAGCGAAGAGCACAACCTGCTCCCCCAGCCTCCTCGGAGCAAATACATCCACCCGGA TGACGAGCTGATCTTGGAAGATGAATTGCAGCGCATCAAACTGGAGGGCGCCATTGACGT GTCCAAGCTGGTCACAGGGACGGTCCTGGCCCTGCTGGGCTCCGCGGGGGATGACGGGAA GTTCCTGGTGGAGGACCACTGCTTTGCAGGGCTTGCCCCTCAGAAGCCCACACGCCCCCT CGACACAGACAGGTTTGTGTTGCTGGTGTCTGGTCTGGGCCTGGGTGGAGGCGGGGGTGA GAGCCTGCTGGGCACCCAGCTGCTGGTGGACGTGGTGACGGGGCAGCTTGGAGACGAAGG GGAGCAGTGCAGTGCCGCCCACGTCTCCCGGGTCATCCTCGCCGGGAACCTCCTCAGCCA TAACACCCAGAGCAGAGATTCCATCAACAAGGCCAAGTACCTGACCAAGAAGACGCAGGC AGCCAGCGTGGAGGCCGTCAAGATGCTGGACGAGATCCTCCTGCAGCTGAGTGCCTCCGT GCCCGTGGACGTGATGCCAGGCGAATTTGACCCGACCAACTACACGCTCCCCCAGCAGCC CCTGCACCCCTGCATGTTCCCTCTGGCCACTGCCTACTCCACGCTCCAGCTGGTCACCAA CCCCTACCAGGCCACCATCGATGGAGTCAGGTTCCTGGGCACATCTGGACAGAACGTGGG TGACATCTTCCGGTACAGCGGCATGGAGGATCACCTGGAGATCCTGGAGTGGACCCTGCA AATCCGCCACATCAGCCCCACAGCTCCTGACACCCTAGGTTGCTACCCTTTCTACAAAAC CGACCCGTTCATCTTTCTGGAGTGCCCACACGTCTACTTTTGTGGCAACACCCCCAGCTT TGGCTCTAAAATCATCCGAGGCCCCGAGGACCAGACAGTGCTGTTGGTAGCTGTCCCCGA CTTCAGCTCCACACAGACCGCCTGCCTCGTGAACCTGCGCAGCCTGACCTGCCAGCCCAT CAGCTTCTCAGGCTTCGGGGCAGAGGAGGAGGACCTGGAAAGCCTGGGTCTGGGCCCCTG ACTCACAAAGGCGGCCTTGTCTCAAGAGGCCCTGGCCATTCCTCCCCTGTGGCGTCAGCA CCGTGGCAGCTTTTGCTTTGTAAATAAAGCCTGACTGTTTACTCGCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1419-1538, + strand, RNAz p=0.532713 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1419-1538, + strand, RNAz p=0.532713 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_006230, + |
| Aligned organism(s): 67 entry(ies) | More info |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
| 72-312, gnl|bosTau2|chr4 (39075213-39074973) | |
| 72-312, gnl|Hg17|chr7 (43934933-43934672) | |
| 72-312, gnl|Mm7|chr11 (5828976-5828715) | |
| 641-872, gnl|bosTau2|chr4 (39071295-39071063) | |
| 641-872, gnl|canFam2|chrUn (33662136-33661924) | |
| 641-872, gnl|canFam2|chrUn (33661936-33662130) | |
| 641-872, gnl|danRer3|chr8 (33123137-33122929) | |
| 641-872, gnl|danRer3|chr8 (33122937-33123131) | |
| 641-872, gnl|dasNov1|scaffold_13994 (22831-22627) | |
| 641-872, gnl|dasNov1|scaffold_13994 (22632-22826) | |
| 641-872, gnl|echTel1|scaffold_261777 (3619-3415) | |
| 641-872, gnl|echTel1|scaffold_261777 (3420-3614) | |
| 641-872, gnl|fr1|chrUn (198322543-198322334) | |
| 641-872, gnl|fr1|chrUn (198322344-198322538) | |
| 641-872, gnl|hg17|chr5 (92629260-92629454) | |
| 641-872, gnl|hg17|chr7 (43929653-43929865) | |
| 641-872, gnl|Hg17|chr7 (43929887-43929655) | |
| 641-872, gnl|mm7|chr11 (5826024-5826236) | |
| 641-872, gnl|mm7|chr11 (5826224-5826030) | |
| 641-872, gnl|Mm7|chr11 (5826258-5826026) | |
| 641-872, gnl|monDom2|scaffold_1 (156050835-156050623) | |
| 641-872, gnl|monDom2|scaffold_1 (156050635-156050829) | |
| 641-872, gnl|panTro1|chr4 (22616629-22616435) | |
| 641-872, gnl|panTro1|chr6_random (31024041-31023829) | |
| 641-872, gnl|rheMac2|chr3 (82219337-82219125) | |
| 641-872, gnl|rheMac2|chr6 (89493220-89493414) | |
| 641-872, gnl|rn3|chr14 (86556699-86556911) | |
| 641-872, gnl|rn3|chr14 (86556899-86556705) | |
| 641-872, gnl|tetNig1|chrUn_random (33555789-33555577) | |
| 641-872, gnl|tetNig1|chrUn_random (33555589-33555783) | |
| 641-872, gnl|xenTro1|scaffold_217 (1446608-1446402) | |
| 641-872, gnl|xenTro1|scaffold_217 (1446409-1446603) | |
| 953-1112, gnl|bosTau2|chr4 (39070546-39070387) | |
| 953-1112, gnl|canFam2|chrUn (33662831-33662622) | |
| 953-1112, gnl|canFam2|chrUn (33662652-33662762) | |
| 953-1112, gnl|danRer3|chr8 (33126448-33126262) | |
| 953-1112, gnl|danRer3|chr8 (33126290-33126399) | |
| 953-1112, gnl|dasNov1|scaffold_13994 (23066-22911) | |
| 953-1112, gnl|dasNov1|scaffold_13994 (22910-23020) | |
| 953-1112, gnl|echTel1|scaffold_261777 (4217-4010) | |
| 953-1112, gnl|echTel1|scaffold_261777 (4046-4155) | |
| 953-1112, gnl|fr1|chrUn (198323020-198322833) | |
| 953-1112, gnl|fr1|chrUn (198322860-198322966) | |
| 953-1112, gnl|hg17|chr5 (92629538-92629649) | |
| 953-1112, gnl|hg17|chr7 (43928934-43929143) | |
| 953-1112, gnl|Hg17|chr7 (43929111-43928952) | |
| 953-1112, gnl|loxAfr1|scaffold_33473 (8638-8531) | |
| 953-1112, gnl|mm7|chr11 (5825404-5825598) | |
| 953-1112, gnl|mm7|chr11 (5825570-5825460) | |
| 953-1112, gnl|Mm7|chr11 (5825569-5825410) | |
| 953-1112, gnl|monDom2|scaffold_1 (156051986-156051780) | |
| 953-1112, gnl|monDom2|scaffold_1 (156051808-156051917) | |
| 953-1112, gnl|oryCun1|scaffold_193215 (466-257) | |
| 953-1112, gnl|oryCun1|scaffold_193215 (288-398) | |
| 953-1112, gnl|panTro1|chr4 (22616351-22616240) | |
| 953-1112, gnl|panTro1|chr6_random (31024760-31024551) | |
| 953-1112, gnl|rheMac2|chr3 (82220052-82219846) | |
| 953-1112, gnl|rheMac2|chr6 (89493498-89493608) | |
| 953-1112, gnl|rn3|chr14 (86556091-86556288) | |
| 953-1112, gnl|rn3|chr14 (86556257-86556147) | |
| 953-1112, gnl|tetNig1|chrUn_random (33556359-33556186) | |
| 953-1112, gnl|tetNig1|chrUn_random (33556200-33556309) | |
| 953-1112, gnl|xenTro1|scaffold_21473 (2579-2397) | |
| 953-1112, gnl|xenTro1|scaffold_21473 (2403-2511) | |
| 1339-1603, gnl|bosTau2|chr4 (39069104-39068840) | |
| 1339-1603, gnl|Hg17|chr7 (43927786-43927533) | |
| 1339-1603, gnl|Mm7|chr11 (5824423-5824192) |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 72-312, gnl|bosTau2|chr4 (39075213-39074973) | |
| 72-312, gnl|Hg17|chr7 (43934933-43934672) | |
| 72-312, gnl|Mm7|chr11 (5828976-5828715) | |
| 641-872, gnl|bosTau2|chr4 (39071295-39071063) | |
| 641-872, gnl|canFam2|chrUn (33662136-33661924) | |
| 641-872, gnl|canFam2|chrUn (33661936-33662130) | |
| 641-872, gnl|danRer3|chr8 (33123137-33122929) | |
| 641-872, gnl|danRer3|chr8 (33122937-33123131) | |
| 641-872, gnl|dasNov1|scaffold_13994 (22831-22627) | |
| 641-872, gnl|dasNov1|scaffold_13994 (22632-22826) | |
| 641-872, gnl|echTel1|scaffold_261777 (3619-3415) | |
| 641-872, gnl|echTel1|scaffold_261777 (3420-3614) | |
| 641-872, gnl|fr1|chrUn (198322543-198322334) | |
| 641-872, gnl|fr1|chrUn (198322344-198322538) | |
| 641-872, gnl|hg17|chr5 (92629260-92629454) | |
| 641-872, gnl|hg17|chr7 (43929653-43929865) | |
| 641-872, gnl|Hg17|chr7 (43929887-43929655) | |
| 641-872, gnl|mm7|chr11 (5826024-5826236) | |
| 641-872, gnl|mm7|chr11 (5826224-5826030) | |
| 641-872, gnl|Mm7|chr11 (5826258-5826026) | |
| 641-872, gnl|monDom2|scaffold_1 (156050835-156050623) | |
| 641-872, gnl|monDom2|scaffold_1 (156050635-156050829) | |
| 641-872, gnl|panTro1|chr4 (22616629-22616435) | |
| 641-872, gnl|panTro1|chr6_random (31024041-31023829) | |
| 641-872, gnl|rheMac2|chr3 (82219337-82219125) | |
| 641-872, gnl|rheMac2|chr6 (89493220-89493414) | |
| 641-872, gnl|rn3|chr14 (86556699-86556911) | |
| 641-872, gnl|rn3|chr14 (86556899-86556705) | |
| 641-872, gnl|tetNig1|chrUn_random (33555789-33555577) | |
| 641-872, gnl|tetNig1|chrUn_random (33555589-33555783) | |
| 641-872, gnl|xenTro1|scaffold_217 (1446608-1446402) | |
| 641-872, gnl|xenTro1|scaffold_217 (1446409-1446603) | |
| 953-1112, gnl|bosTau2|chr4 (39070546-39070387) | |
| 953-1112, gnl|canFam2|chrUn (33662831-33662622) | |
| 953-1112, gnl|canFam2|chrUn (33662652-33662762) | |
| 953-1112, gnl|danRer3|chr8 (33126448-33126262) | |
| 953-1112, gnl|danRer3|chr8 (33126290-33126399) | |
| 953-1112, gnl|dasNov1|scaffold_13994 (23066-22911) | |
| 953-1112, gnl|dasNov1|scaffold_13994 (22910-23020) | |
| 953-1112, gnl|echTel1|scaffold_261777 (4217-4010) | |
| 953-1112, gnl|echTel1|scaffold_261777 (4046-4155) | |
| 953-1112, gnl|fr1|chrUn (198323020-198322833) | |
| 953-1112, gnl|fr1|chrUn (198322860-198322966) | |
| 953-1112, gnl|hg17|chr5 (92629538-92629649) | |
| 953-1112, gnl|hg17|chr7 (43928934-43929143) | |
| 953-1112, gnl|Hg17|chr7 (43929111-43928952) | |
| 953-1112, gnl|loxAfr1|scaffold_33473 (8638-8531) | |
| 953-1112, gnl|mm7|chr11 (5825404-5825598) | |
| 953-1112, gnl|mm7|chr11 (5825570-5825460) | |
| 953-1112, gnl|Mm7|chr11 (5825569-5825410) | |
| 953-1112, gnl|monDom2|scaffold_1 (156051986-156051780) | |
| 953-1112, gnl|monDom2|scaffold_1 (156051808-156051917) | |
| 953-1112, gnl|oryCun1|scaffold_193215 (466-257) | |
| 953-1112, gnl|oryCun1|scaffold_193215 (288-398) | |
| 953-1112, gnl|panTro1|chr4 (22616351-22616240) | |
| 953-1112, gnl|panTro1|chr6_random (31024760-31024551) | |
| 953-1112, gnl|rheMac2|chr3 (82220052-82219846) | |
| 953-1112, gnl|rheMac2|chr6 (89493498-89493608) | |
| 953-1112, gnl|rn3|chr14 (86556091-86556288) | |
| 953-1112, gnl|rn3|chr14 (86556257-86556147) | |
| 953-1112, gnl|tetNig1|chrUn_random (33556359-33556186) | |
| 953-1112, gnl|tetNig1|chrUn_random (33556200-33556309) | |
| 953-1112, gnl|xenTro1|scaffold_21473 (2579-2397) | |
| 953-1112, gnl|xenTro1|scaffold_21473 (2403-2511) | |
| 1339-1603, gnl|bosTau2|chr4 (39069104-39068840) | |
| 1339-1603, gnl|Hg17|chr7 (43927786-43927533) | |
| 1339-1603, gnl|Mm7|chr11 (5824423-5824192) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| pro (0.512033) | |
| col (0.195008) | |
| cst (0.140036) | |
| nca (0.136874) | |
| jej (0.0989218) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| col (0.195008) | |
| cst (0.140036) | |
| nca (0.136874) | |
| jej (0.0989218) |