Non-Coding RNA Search

Ss1.1-Ova1-OVRM10032E07.5

Sequence:


               
               TGTTAGGGCTCCTTAAAAGCAAAGTAAAAAATGTTAAACATCCCAGCCCCCAGTCATGCT
TTTGCCATTTTGGCCTCTCCTGCGGCCACCCTTGTTGGTAGGGGTTTGGCTTGACCACAC
CCCGCAGAGGCACAGAAGAAGGCTCGCACCGTCTGTTCGCTTCACATCTGAAGCCGTCCC
TTCAAAACGTCAGCCAAAAGGACTAGCTGGCTTCTCTGCGCTCATCTATGACTAACTTGC
TTAGCATGATTCTCAGAACTCAACAGGTGTACCTAAAACTATAAATGTGTTTGTGCCTTA
AAAGGAGAGAAGAACGTGTAGTTAAGAGTGCCATGGATGAAGTTCTGAGCCAGGCAAGTA
GTCAGATTGTCAGACGGCCAGTTGTGAACCCGAAGTAACAAGGGAGCCTTCAGAGGCACA
GTGTGTGCATGTGTGAGCATGCGTGTGTGTGCTTCCCTCTCCTTCCCCACCTCCCCACCA
GGTGTCATTGCCATGCTCTGCTTTCCCCACCTTCAGTGCAGAGGTTTCTTAAGTACCGTT
CTGGGTAGTCAGAAGCTGGTTCTTGCTGTCCGTGTACTTCCCGTGTGCTCTTTATTCCTA
GCAGAGTGATGTGTTTTGCACGTCTTGCTATTGAGCATGCACTGCTGCTTGTCCTGTTCT
CTTTGGGAGGCCTTGGTGCCAGGCAATTTGCCAGTGAAGACTTTGTGGGTAGTTCAGAAC
ACGTGTCACCTCAGCTGATGCTGTGGGCAGGTGATGTCATCCTCTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTAGGGCTCCTTAAAAGCAAAGTAAAAAATGTTAAACATCCCAGCCCCCAGTCATGCT
TTTGCCATTTTGGCCTCTCCTGCGGCCACCCTTGTTGGTAGGGGTTTGGCTTGACCACAC
CCCGCAGAGGCACAGAAGAAGGCTCGCACCGTCTGTTCGCTTCACATCTGAAGCCGTCCC
TTCAAAACGTCAGCCAAAAGGACTAGCTGGCTTCTCTGCGCTCATCTATGACTAACTTGC
TTAGCATGATTCTCAGAACTCAACAGGTGTACCTAAAACTATAAATGTGTTTGTGCCTTA
AAAGGAGAGAAGAACGTGTAGTTAAGAGTGCCATGGATGAAGTTCTGAGCCAGGCAAGTA
GTCAGATTGTCAGACGGCCAGTTGTGAACCCGAAGTAACAAGGGAGCCTTCAGAGGCACA
GTGTGTGCATGTGTGAGCATGCGTGTGTGTGCTTCCCTCTCCTTCCCCACCTCCCCACCA
GGTGTCATTGCCATGCTCTGCTTTCCCCACCTTCAGTGCAGAGGTTTCTTAAGTACCGTT
CTGGGTAGTCAGAAGCTGGTTCTTGCTGTCCGTGTACTTCCCGTGTGCTCTTTATTCCTA
GCAGAGTGATGTGTTTTGCACGTCTTGCTATTGAGCATGCACTGCTGCTTGTCCTGTTCT
CTTTGGGAGGCCTTGGTGCCAGGCAATTTGCCAGTGAAGACTTTGTGGGTAGTTCAGAAC
ACGTGTCACCTCAGCTGATGCTGTGGGCAGGTGATGTCATCCTCTCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               40-157, - strand, RNAz p=0.920188

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-157, - strand, RNAz p=0.920188

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               4-768, gnl|bosTau2|chr23 (8407547-8408321)
               

               
               4-768, gnl|Hg17|chr6 (36184509-36185287)
               

               
               4-768, gnl|Mm7|chr17 (26932828-26933514)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-768, gnl|bosTau2|chr23 (8407547-8408321)
               

               
               4-768, gnl|Hg17|chr6 (36184509-36185287)
               

               
               4-768, gnl|Mm7|chr17 (26932828-26933514)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               cbr (2.94343)
               

               
               rec (0.17307)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (2.94343)
               

               
               rec (0.17307)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)

	4-768, gnl\|bosTau2\|chr23 (8407547-8408321)
	4-768, gnl\|Hg17\|chr6 (36184509-36185287)
	4-768, gnl\|Mm7\|chr17 (26932828-26933514)

	cbr (2.94343)
	rec (0.17307)
	ste (0.135208)
	ova (0.129132)
	pgl (0.118483)
	cbl (0.114797)