Ss1.1-Ova1-OVRM10033C07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTTCGCTTAATGCTTGGTTAAGTGCGGACCGGTGCCAGCCCGAGGTATCCTCGAGGTGA GACCAGATTTCGGAAAGTTGGCCGCTGCCAGCAGCATGGAGTTCGTGAAGTGCCTGGGGC ACCCCGAGGAGTTCTACAATCTGCTGCGCTTCCAGATGGGGGGCCGGCGGAAGGTGATAC CCAAGATGAATCAGGACTCGCTCAGCAGCAGTTTGAAAACTTGCTACAAGTATCTGAATC AGACCAGTCGCAGTTTCGCAGCCGTTATCCAGGCCCTGGATGGGGAAATGCGCCATGCAG TGTGCATATTTTATCTGGTTCTCCGAGCTCTGGACACTCTGGAAGATGACATGACCATCA GTATAGAGAAGAAGATCCCCCTGTTACACAACTTCCACTTGCACCTTTATGAGTCTGACT GGCGGTTCACTGAGAGCAAAGAGAAGGACCGACAAGTCCTGGAGGACTTTCCAACGATTG CCCTCGAGTTTAGAAATCTGGCTGAGAAATATCAAGTGGTGATAGTTGACGTTTGCCGGA AGATGGGATTCGGGATGGCAGAGTTTTTGAATAAGCACGTGACATCAGAACGGGAGTGGG ACAAGTACTGTCACTACGTTGCTGGGCTGGTGGGAATTGGCCTTTCCCGTCTATTCTCGG CCTCAGAGTTAGAAGATCCCTTGGTGGGTGAAGACACAGAGCGTGCCAACTCCATGGGCC TGTTCCTGCAGAAAACAAACATCATCCGTGATTATCTGGAAGACCAGCAAGAAGGAAGAG AGTTTTGGCCTCAAGAGGTTTGGAGCAAGTATGTTAAGAAGTTGGGTGACTTTGCAAAGC CAGAGAACGTGGACTTGGCCGTGCAGTGCCTGAACGAGCTAGTCACCAGTACACTGCACC ACATCCCCGACGTCATCACGTACCTTTCACGACTTAGAAACCAGAGCATATTTAACTTCT GTGCTATCCCACAGGTCATGGCCATTGCTACTTTGGCTGCCTGTTATAATAATCAGCAGG TGTTCAAAGGGGTGGTGAAGATTCGAAAAGGGCAAGCAGTCACCCTGATGATGGATGCCA CCAACATGCCAGCTGTCAAAGCCATAATACACCAGTACATGGAAGAGATTTATCACAGAA TCCCCGACTCGGACCCTTATTCGGCCAAAACAAGGCAGATCATCTCCACCATCAGGACAC AGAATCTTCCCAATTGTCAGCTGATCTCCCGAAGCCACTACTCACCCATTTACCTGTCAT TCGTCATGCTGCTGGCGGCCCTGAGCTGGCAGTACCTGAGCACCCTGTCGCAGGTCACAG AGGACTACGTTCAGACCGGGGAGCACTGACCGGGGGCTGGGGACTGAGGGCGCCAGGACC ACCGACCTCTTCAGGGATGGATGTGGGCGTCCACCCTCCTCACTCCTGCAACAACTCATG GGCCTGGCCCTGTAGAAGCTGTGCTGTGGGATTAAGAAGATTCAAGGGAAAGGACCCTTT GGCTCTGGCTGTGTGGGGGCTGCAGGTCGGAGAGTGGCTGCTTCTGGAACTCTGGGGAGA TGGCTCTTAGTGTGAACACAGCTGGAATTATAATTAAATGTATTTAATTTGAAGCATCTT TTGAATGCCTATCCTAGTAGAATGCAAAGTAGATTTTCTTCCTTGTTGGGGTCCTGTTTT TCTCATCATTTTGTTTCCTCCAGTGGACTTGAATGTGGTAGGTGGGAATGTGGAAATTCC AGGAAATATCCCCATGTTTGCTAAGAATGCAGACTGCTTTCTGCACATGGGGGCTAGGAA GAAACTGCTGGGTGGTGGTGGCATCGTTTCCTCGTGTAAAGAAAAGGAGCTTAGGTTTCA GAAGAAAATGGCAGGATTGCCTTTGGCCCTATCATTTTTGAGATTTTTGTAATAAAGGAT TGAATTACTCAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTTCGCTTAATGCTTGGTTAAGTGCGGACCGGTGCCAGCCCGAGGTATCCTCGAGGTGA GACCAGATTTCGGAAAGTTGGCCGCTGCCAGCAGCATGGAGTTCGTGAAGTGCCTGGGGC ACCCCGAGGAGTTCTACAATCTGCTGCGCTTCCAGATGGGGGGCCGGCGGAAGGTGATAC CCAAGATGAATCAGGACTCGCTCAGCAGCAGTTTGAAAACTTGCTACAAGTATCTGAATC AGACCAGTCGCAGTTTCGCAGCCGTTATCCAGGCCCTGGATGGGGAAATGCGCCATGCAG TGTGCATATTTTATCTGGTTCTCCGAGCTCTGGACACTCTGGAAGATGACATGACCATCA GTATAGAGAAGAAGATCCCCCTGTTACACAACTTCCACTTGCACCTTTATGAGTCTGACT GGCGGTTCACTGAGAGCAAAGAGAAGGACCGACAAGTCCTGGAGGACTTTCCAACGATTG CCCTCGAGTTTAGAAATCTGGCTGAGAAATATCAAGTGGTGATAGTTGACGTTTGCCGGA AGATGGGATTCGGGATGGCAGAGTTTTTGAATAAGCACGTGACATCAGAACGGGAGTGGG ACAAGTACTGTCACTACGTTGCTGGGCTGGTGGGAATTGGCCTTTCCCGTCTATTCTCGG CCTCAGAGTTAGAAGATCCCTTGGTGGGTGAAGACACAGAGCGTGCCAACTCCATGGGCC TGTTCCTGCAGAAAACAAACATCATCCGTGATTATCTGGAAGACCAGCAAGAAGGAAGAG AGTTTTGGCCTCAAGAGGTTTGGAGCAAGTATGTTAAGAAGTTGGGTGACTTTGCAAAGC CAGAGAACGTGGACTTGGCCGTGCAGTGCCTGAACGAGCTAGTCACCAGTACACTGCACC ACATCCCCGACGTCATCACGTACCTTTCACGACTTAGAAACCAGAGCATATTTAACTTCT GTGCTATCCCACAGGTCATGGCCATTGCTACTTTGGCTGCCTGTTATAATAATCAGCAGG TGTTCAAAGGGGTGGTGAAGATTCGAAAAGGGCAAGCAGTCACCCTGATGATGGATGCCA CCAACATGCCAGCTGTCAAAGCCATAATACACCAGTACATGGAAGAGATTTATCACAGAA TCCCCGACTCGGACCCTTATTCGGCCAAAACAAGGCAGATCATCTCCACCATCAGGACAC AGAATCTTCCCAATTGTCAGCTGATCTCCCGAAGCCACTACTCACCCATTTACCTGTCAT TCGTCATGCTGCTGGCGGCCCTGAGCTGGCAGTACCTGAGCACCCTGTCGCAGGTCACAG AGGACTACGTTCAGACCGGGGAGCACTGACCGGGGGCTGGGGACTGAGGGCGCCAGGACC ACCGACCTCTTCAGGGATGGATGTGGGCGTCCACCCTCCTCACTCCTGCAACAACTCATG GGCCTGGCCCTGTAGAAGCTGTGCTGTGGGATTAAGAAGATTCAAGGGAAAGGACCCTTT GGCTCTGGCTGTGTGGGGGCTGCAGGTCGGAGAGTGGCTGCTTCTGGAACTCTGGGGAGA TGGCTCTTAGTGTGAACACAGCTGGAATTATAATTAAATGTATTTAATTTGAAGCATCTT TTGAATGCCTATCCTAGTAGAATGCAAAGTAGATTTTCTTCCTTGTTGGGGTCCTGTTTT TCTCATCATTTTGTTTCCTCCAGTGGACTTGAATGTGGTAGGTGGGAATGTGGAAATTCC AGGAAATATCCCCATGTTTGCTAAGAATGCAGACTGCTTTCTGCACATGGGGGCTAGGAA GAAACTGCTGGGTGGTGGTGGCATCGTTTCCTCGTGTAAAGAAAAGGAGCTTAGGTTTCA GAAGAAAATGGCAGGATTGCCTTTGGCCCTATCATTTTTGAGATTTTTGTAATAAAGGAT TGAATTACTCAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 859-976, - strand, RNAz p=0.512015 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 859-976, - strand, RNAz p=0.512015 |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 1-195, gnl|bosTau2|chr8 (2259982-2259791) | |
| 1-195, gnl|Hg17|chr8 (11697668-11697850) | |
| 1-195, gnl|Mm7|chr14 (58041730-58041561) | |
| 292-476, gnl|bosTau2|chr8 (1735705-1735889) | |
| 292-476, gnl|canFam2|chr25 (29069520-29069317) | |
| 292-476, gnl|danRer3|chr7 (52742605-52742413) | |
| 292-476, gnl|dasNov1|scaffold_219970 (3185-3389) | |
| 292-476, gnl|echTel1|scaffold_267185 (7216-7010) | |
| 292-476, gnl|fr1|chrUn (142012844-142012633) | |
| 292-476, gnl|galGal2|chr3 (105265461-105265661) | |
| 292-476, gnl|hg17|chr8 (11704571-11704775) | |
| 292-476, gnl|Hg17|chr8 (11704584-11704768) | |
| 292-476, gnl|loxAfr1|scaffold_125097 (1247-1445) | |
| 292-476, gnl|mm7|chr14 (58027379-58027177) | |
| 292-476, gnl|Mm7|chr14 (58027365-58027181) | |
| 292-476, gnl|monDom2|scaffold_1 (97746930-97747130) | |
| 292-476, gnl|oryCun1|scaffold_156612 (7086-6883) | |
| 292-476, gnl|panTro1|chr7 (12362392-12362597) | |
| 292-476, gnl|rheMac2|chr8 (8928593-8928389) | |
| 292-476, gnl|rn3|chr15 (42458342-42458142) | |
| 292-476, gnl|tetNig1|chr14 (5134076-5133866) | |
| 292-476, gnl|xenTro1|scaffold_55 (2090523-2090320) | |
| 604-799, gnl|bosTau2|chr8 (1740824-1741019) | |
| 604-799, gnl|canFam2|chr25 (29059613-29059396) | |
| 604-799, gnl|danRer3|chr7 (52736298-52736094) | |
| 604-799, gnl|dasNov1|scaffold_72254 (2667-2882) | |
| 604-799, gnl|echTel1|scaffold_230230 (1693-1911) | |
| 604-799, gnl|fr1|chrUn (142012248-142012040) | |
| 604-799, gnl|galGal2|chr3 (105267205-105267411) | |
| 604-799, gnl|hg17|chr8 (11720921-11721138) | |
| 604-799, gnl|Hg17|chr8 (11720940-11721135) | |
| 604-799, gnl|loxAfr1|scaffold_14456 (8557-8774) | |
| 604-799, gnl|mm7|chr14 (58020653-58020435) | |
| 604-799, gnl|Mm7|chr14 (58020631-58020436) | |
| 604-799, gnl|monDom2|scaffold_1 (97774725-97774942) | |
| 604-799, gnl|oryCun1|scaffold_204281 (45441-45228) | |
| 604-799, gnl|panTro1|chr7 (12379181-12379400) | |
| 604-799, gnl|rheMac2|chr8 (8911576-8911359) | |
| 604-799, gnl|rn3|chr15 (42452403-42452188) | |
| 604-799, gnl|tetNig1|chr14 (5133541-5133335) | |
| 604-799, gnl|xenTro1|scaffold_55 (2088168-2087960) | |
| 800-976, gnl|bosTau2|chr8 (1742993-1743169) | |
| 800-976, gnl|Hg17|chr8 (11725164-11725340) | |
| 800-976, gnl|Mm7|chr14 (58016380-58016204) | |
| 1123-1374, gnl|bosTau2|chr8 (1747854-1748108) | |
| 1123-1374, gnl|canFam2|chr25 (29046711-29046510) | |
| 1123-1374, gnl|danRer3|chr7 (52723340-52723140) | |
| 1123-1374, gnl|dasNov1|scaffold_110519 (6447-6648) | |
| 1123-1374, gnl|echTel1|scaffold_224215 (2543-2743) | |
| 1123-1374, gnl|fr1|chrUn (142011263-142011058) | |
| 1123-1374, gnl|galGal2|chr3 (105270336-105270537) | |
| 1123-1374, gnl|hg17|chr8 (11733279-11733482) | |
| 1123-1374, gnl|Hg17|chr8 (11733301-11733555) | |
| 1123-1374, gnl|loxAfr1|scaffold_14456 (26475-26678) | |
| 1123-1374, gnl|mm7|chr14 (58010876-58010673) | |
| 1123-1374, gnl|Mm7|chr14 (58010852-58010601) | |
| 1123-1374, gnl|monDom2|scaffold_1 (97781979-97782176) | |
| 1123-1374, gnl|panTro1|chr7 (12391619-12391822) | |
| 1123-1374, gnl|rheMac2|chr8 (8901968-8901765) | |
| 1123-1374, gnl|rn3|chr15 (42443105-42442912) | |
| 1123-1374, gnl|tetNig1|chr14 (5132513-5132329) | |
| 1123-1374, gnl|xenTro1|scaffold_55 (2086408-2086205) | |
| 1518-1861, gnl|bosTau2|chr8 (1748331-1748662) | |
| 1518-1861, gnl|Hg17|chr8 (11733783-11734129) | |
| 1615-1755, gnl|bosTau2|chr10 (58231554-58231694) | |
| 1615-1755, gnl|canFam2|chr8 (47979395-47979458) | |
| 1615-1755, gnl|echTel1|scaffold_309783 (163149-163246) | |
| 1615-1755, gnl|hg17|chr14 (70933643-70933764) | |
| 1615-1755, gnl|loxAfr1|scaffold_5223 (62900-62996) | |
| 1615-1755, gnl|mm7|chr12 (80215784-80216013) | |
| 1615-1755, gnl|oryCun1|scaffold_208357 (160049-160157) | |
| 1615-1755, gnl|panTro1|chr15 (70706993-70707114) | |
| 1615-1755, gnl|rheMac2|chr7 (134496029-134496150) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-195, gnl|bosTau2|chr8 (2259982-2259791) | |
| 1-195, gnl|Hg17|chr8 (11697668-11697850) | |
| 1-195, gnl|Mm7|chr14 (58041730-58041561) | |
| 292-476, gnl|bosTau2|chr8 (1735705-1735889) | |
| 292-476, gnl|canFam2|chr25 (29069520-29069317) | |
| 292-476, gnl|danRer3|chr7 (52742605-52742413) | |
| 292-476, gnl|dasNov1|scaffold_219970 (3185-3389) | |
| 292-476, gnl|echTel1|scaffold_267185 (7216-7010) | |
| 292-476, gnl|fr1|chrUn (142012844-142012633) | |
| 292-476, gnl|galGal2|chr3 (105265461-105265661) | |
| 292-476, gnl|hg17|chr8 (11704571-11704775) | |
| 292-476, gnl|Hg17|chr8 (11704584-11704768) | |
| 292-476, gnl|loxAfr1|scaffold_125097 (1247-1445) | |
| 292-476, gnl|mm7|chr14 (58027379-58027177) | |
| 292-476, gnl|Mm7|chr14 (58027365-58027181) | |
| 292-476, gnl|monDom2|scaffold_1 (97746930-97747130) | |
| 292-476, gnl|oryCun1|scaffold_156612 (7086-6883) | |
| 292-476, gnl|panTro1|chr7 (12362392-12362597) | |
| 292-476, gnl|rheMac2|chr8 (8928593-8928389) | |
| 292-476, gnl|rn3|chr15 (42458342-42458142) | |
| 292-476, gnl|tetNig1|chr14 (5134076-5133866) | |
| 292-476, gnl|xenTro1|scaffold_55 (2090523-2090320) | |
| 604-799, gnl|bosTau2|chr8 (1740824-1741019) | |
| 604-799, gnl|canFam2|chr25 (29059613-29059396) | |
| 604-799, gnl|danRer3|chr7 (52736298-52736094) | |
| 604-799, gnl|dasNov1|scaffold_72254 (2667-2882) | |
| 604-799, gnl|echTel1|scaffold_230230 (1693-1911) | |
| 604-799, gnl|fr1|chrUn (142012248-142012040) | |
| 604-799, gnl|galGal2|chr3 (105267205-105267411) | |
| 604-799, gnl|hg17|chr8 (11720921-11721138) | |
| 604-799, gnl|Hg17|chr8 (11720940-11721135) | |
| 604-799, gnl|loxAfr1|scaffold_14456 (8557-8774) | |
| 604-799, gnl|mm7|chr14 (58020653-58020435) | |
| 604-799, gnl|Mm7|chr14 (58020631-58020436) | |
| 604-799, gnl|monDom2|scaffold_1 (97774725-97774942) | |
| 604-799, gnl|oryCun1|scaffold_204281 (45441-45228) | |
| 604-799, gnl|panTro1|chr7 (12379181-12379400) | |
| 604-799, gnl|rheMac2|chr8 (8911576-8911359) | |
| 604-799, gnl|rn3|chr15 (42452403-42452188) | |
| 604-799, gnl|tetNig1|chr14 (5133541-5133335) | |
| 604-799, gnl|xenTro1|scaffold_55 (2088168-2087960) | |
| 800-976, gnl|bosTau2|chr8 (1742993-1743169) | |
| 800-976, gnl|Hg17|chr8 (11725164-11725340) | |
| 800-976, gnl|Mm7|chr14 (58016380-58016204) | |
| 1123-1374, gnl|bosTau2|chr8 (1747854-1748108) | |
| 1123-1374, gnl|canFam2|chr25 (29046711-29046510) | |
| 1123-1374, gnl|danRer3|chr7 (52723340-52723140) | |
| 1123-1374, gnl|dasNov1|scaffold_110519 (6447-6648) | |
| 1123-1374, gnl|echTel1|scaffold_224215 (2543-2743) | |
| 1123-1374, gnl|fr1|chrUn (142011263-142011058) | |
| 1123-1374, gnl|galGal2|chr3 (105270336-105270537) | |
| 1123-1374, gnl|hg17|chr8 (11733279-11733482) | |
| 1123-1374, gnl|Hg17|chr8 (11733301-11733555) | |
| 1123-1374, gnl|loxAfr1|scaffold_14456 (26475-26678) | |
| 1123-1374, gnl|mm7|chr14 (58010876-58010673) | |
| 1123-1374, gnl|Mm7|chr14 (58010852-58010601) | |
| 1123-1374, gnl|monDom2|scaffold_1 (97781979-97782176) | |
| 1123-1374, gnl|panTro1|chr7 (12391619-12391822) | |
| 1123-1374, gnl|rheMac2|chr8 (8901968-8901765) | |
| 1123-1374, gnl|rn3|chr15 (42443105-42442912) | |
| 1123-1374, gnl|tetNig1|chr14 (5132513-5132329) | |
| 1123-1374, gnl|xenTro1|scaffold_55 (2086408-2086205) | |
| 1518-1861, gnl|bosTau2|chr8 (1748331-1748662) | |
| 1518-1861, gnl|Hg17|chr8 (11733783-11734129) | |
| 1615-1755, gnl|bosTau2|chr10 (58231554-58231694) | |
| 1615-1755, gnl|canFam2|chr8 (47979395-47979458) | |
| 1615-1755, gnl|echTel1|scaffold_309783 (163149-163246) | |
| 1615-1755, gnl|hg17|chr14 (70933643-70933764) | |
| 1615-1755, gnl|loxAfr1|scaffold_5223 (62900-62996) | |
| 1615-1755, gnl|mm7|chr12 (80215784-80216013) | |
| 1615-1755, gnl|oryCun1|scaffold_208357 (160049-160157) | |
| 1615-1755, gnl|panTro1|chr15 (70706993-70707114) | |
| 1615-1755, gnl|rheMac2|chr7 (134496029-134496150) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| lun (0.300978) | |
| fat (0.294855) | |
| hyp (0.285673) | |
| cov (0.264306) | |
| ecc (0.23007) | |
| tes (0.207814) | |
| eje (0.197668) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| ute (0.132784) | |
| sug (0.127291) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.300978) | |
| fat (0.294855) | |
| hyp (0.285673) | |
| cov (0.264306) | |
| ecc (0.23007) | |
| tes (0.207814) | |
| eje (0.197668) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| ute (0.132784) | |
| sug (0.127291) | |
| jca (0.11396) | |
| cty (0.10408) |