Non-Coding RNA Search

Ss1.1-Ova1-OVRM10034H07.5

Sequence:


               
               CGTTTAGGCTTCTGGTCGGTCTGGGAAAAATCAGGTCCTGAGTCGTGGGAGCAGCAGGAT
CCTTTGCAGGAGGGAGGAGTTAGAGGCTTTGGGGTCAGCATTTCTGGGGACATGCTTGAC
TGAAGACGGATTTCGGAAGAGGAACTTAGAGCAGATCCCGAGGACCCGAGGACAGAGCCT
CCCTGTTGCCAGCTCTTTCCAGAGACAGAAGAAGATGATCCAGGCCCAGGGAACCCTGAC
CTTTGACGATGTGGCCGTGGACTTCACGTGGGAGGAGTGGCAGCTCCTGACCCCCGCGCA
GAAGGACCTGTTCCGGGACGTGATGCTGGAGAACTACCGCAACCTGGTGGCCGTGGGTTA
TCAAGCCCGCAGCGCAGATGTGCTCTCCAGACTGGATCGAGGAGAACCACGGCCGGTGGA
GGCTGACATCCACGCTCACACCCGAGCAGAAACCTGCAAAGTTGATGATCACCTGCTGGA
GCACTTCCACCACGAGAGCAGGGAGAAGATCCTAGAACAGTGGCACAGACACACCCCCCT
GGAAAATTCTGTTCCTCAGAGCAAAGCTAGTTTTCTGTTCAGGCCAAATCATGATACATC
TGACATCCATGGAAACAGTATGAAGTCAGCTTTACCTCTCCCTCCCCAGAGCAGGAGCTG
TGAAACAAAGAAACCCGCTGAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTTTAGGCTTCTGGTCGGTCTGGGAAAAATCAGGTCCTGAGTCGTGGGAGCAGCAGGAT
CCTTTGCAGGAGGGAGGAGTTAGAGGCTTTGGGGTCAGCATTTCTGGGGACATGCTTGAC
TGAAGACGGATTTCGGAAGAGGAACTTAGAGCAGATCCCGAGGACCCGAGGACAGAGCCT
CCCTGTTGCCAGCTCTTTCCAGAGACAGAAGAAGATGATCCAGGCCCAGGGAACCCTGAC
CTTTGACGATGTGGCCGTGGACTTCACGTGGGAGGAGTGGCAGCTCCTGACCCCCGCGCA
GAAGGACCTGTTCCGGGACGTGATGCTGGAGAACTACCGCAACCTGGTGGCCGTGGGTTA
TCAAGCCCGCAGCGCAGATGTGCTCTCCAGACTGGATCGAGGAGAACCACGGCCGGTGGA
GGCTGACATCCACGCTCACACCCGAGCAGAAACCTGCAAAGTTGATGATCACCTGCTGGA
GCACTTCCACCACGAGAGCAGGGAGAAGATCCTAGAACAGTGGCACAGACACACCCCCCT
GGAAAATTCTGTTCCTCAGAGCAAAGCTAGTTTTCTGTTCAGGCCAAATCATGATACATC
TGACATCCATGGAAACAGTATGAAGTCAGCTTTACCTCTCCCTCCCCAGAGCAGGAGCTG
TGAAACAAAGAAACCCGCTGAGCT

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               227-358, gnl|bosTau2|chr18 (50278846-50278977)
               

               
               227-358, gnl|Hg17|chr11 (97942749-97942633)
               

               
               227-358, gnl|Mm7|chr8 (105017923-105018054)
               


               
               448-684, gnl|bosTau2|chr18 (50271097-50271333)
               

               
               448-684, gnl|Hg17|chr19 (57161281-57161048)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               227-358, gnl|bosTau2|chr18 (50278846-50278977)
               

               
               227-358, gnl|Hg17|chr11 (97942749-97942633)
               

               
               227-358, gnl|Mm7|chr8 (105017923-105018054)
               


               
               448-684, gnl|bosTau2|chr18 (50271097-50271333)
               

               
               448-684, gnl|Hg17|chr19 (57161281-57161048)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fce (0.271592)
               

               
               csk (0.140746)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               csk (0.140746)
               

               
               pla (0.133672)

	227-358, gnl\|bosTau2\|chr18 (50278846-50278977)
	227-358, gnl\|Hg17\|chr11 (97942749-97942633)
	227-358, gnl\|Mm7\|chr8 (105017923-105018054)

	448-684, gnl\|bosTau2\|chr18 (50271097-50271333)
	448-684, gnl\|Hg17\|chr19 (57161281-57161048)