Non-Coding RNA Search

Ss1.1-Ova1-OVRM10034H12.5

Sequence:


               
               AGGAACCAGAGCCGGAGCTGGCGGCTCCGGGGGAAGATGCAGAGCCGCAGGCGGGGCCAT
CTGCCCGCGGCTCTCCGAGCCCTGCCACCCCCGGGCCCCCGGCTGACCCTCCGCCTCGCA
TGGACCTGCCACCCGCGGGGCAGCCCCTGCGCCATCCGACCCGGGCCAGGCCACGGCCGC
GACGCCAGCACCACCACCGCCCGCCGCCGGGGGGCCCCCAGGTGCCCCCAGCCCTGCCGC
AGGAAGGGAATGGACTCAGTGCCCGTGTGGACGAGGGTGTGGAGGAATTCTTCTCCAAAA
GGTTGATCCAGCAGGATCGCCTCTGGGCCCCGGAGGAGGACCCAGCCACCGAGGGGGGTT
CCACCCCTGTCCCTCGGACACTTCGAAAGAAGCTGGGCACCCTCTTTGCCTTCAAGAAGC
CTCGTTCAACACGTGGGCCACGGCCTGATCTAGAGACCAGCCCTGGGGCAGCTCCCCGCA
CTCGAAAAACCACACTTGGGGACCTGCTGCGGCCACCAGCCCGTTCTGGCCGTGGCGAGG
AGCCTGGTGGGGCGGAGGGGGGCACCAGCAGCCCTGACCCTACCCGCAGGAGTCGGCCTC
GCTACACTCGGGAAAGCAAGGCTTACTCCATGATACTGCTACCTGCCGAGGAGGAAGAGA
CAACACTGGGTGCCAGACCTGACAAGCGGCGGCCCCTGGAGCGGGGAGACACAGAGCTGG
CCCCATCCTTTGAGCAGCGAGTACAAGTGATGCTGCAGAGGATCGGCGTGAGCAGAGGCA
GCGGGAGTGCTGACGGCAAGAGGAAGCAAAGCAAAGATGGAGAGATCAAGAAGGCTGGCT
CAGATGGTGACATTATGGACAGTTCCACAGAGACCCCGCCCATCTCAATCAAGTCCCGTA
CTCACTCTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAACCAGAGCCGGAGCTGGCGGCTCCGGGGGAAGATGCAGAGCCGCAGGCGGGGCCAT
CTGCCCGCGGCTCTCCGAGCCCTGCCACCCCCGGGCCCCCGGCTGACCCTCCGCCTCGCA
TGGACCTGCCACCCGCGGGGCAGCCCCTGCGCCATCCGACCCGGGCCAGGCCACGGCCGC
GACGCCAGCACCACCACCGCCCGCCGCCGGGGGGCCCCCAGGTGCCCCCAGCCCTGCCGC
AGGAAGGGAATGGACTCAGTGCCCGTGTGGACGAGGGTGTGGAGGAATTCTTCTCCAAAA
GGTTGATCCAGCAGGATCGCCTCTGGGCCCCGGAGGAGGACCCAGCCACCGAGGGGGGTT
CCACCCCTGTCCCTCGGACACTTCGAAAGAAGCTGGGCACCCTCTTTGCCTTCAAGAAGC
CTCGTTCAACACGTGGGCCACGGCCTGATCTAGAGACCAGCCCTGGGGCAGCTCCCCGCA
CTCGAAAAACCACACTTGGGGACCTGCTGCGGCCACCAGCCCGTTCTGGCCGTGGCGAGG
AGCCTGGTGGGGCGGAGGGGGGCACCAGCAGCCCTGACCCTACCCGCAGGAGTCGGCCTC
GCTACACTCGGGAAAGCAAGGCTTACTCCATGATACTGCTACCTGCCGAGGAGGAAGAGA
CAACACTGGGTGCCAGACCTGACAAGCGGCGGCCCCTGGAGCGGGGAGACACAGAGCTGG
CCCCATCCTTTGAGCAGCGAGTACAAGTGATGCTGCAGAGGATCGGCGTGAGCAGAGGCA
GCGGGAGTGCTGACGGCAAGAGGAAGCAAAGCAAAGATGGAGAGATCAAGAAGGCTGGCT
CAGATGGTGACATTATGGACAGTTCCACAGAGACCCCGCCCATCTCAATCAAGTCCCGTA
CTCACTCTGTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q86XL4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q86XL4_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               323-441, + strand, RNAz p=0.615245

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               323-441, + strand, RNAz p=0.615245

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-224, gnl|bosTau2|chr18 (15160495-15160274)
               

               
               3-224, gnl|Hg17|chr16 (66244440-66244661)
               

               
               3-224, gnl|Mm7|chr8 (104292819-104293039)
               


               
               323-694, gnl|bosTau2|chr18 (15159253-15158882)
               

               
               323-694, gnl|Hg17|chr16 (66245736-66246104)
               

               
               323-694, gnl|Mm7|chr8 (104293995-104294363)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-224, gnl|bosTau2|chr18 (15160495-15160274)
               

               
               3-224, gnl|Hg17|chr16 (66244440-66244661)
               

               
               3-224, gnl|Mm7|chr8 (104292819-104293039)
               


               
               323-694, gnl|bosTau2|chr18 (15159253-15158882)
               

               
               323-694, gnl|Hg17|chr16 (66245736-66246104)
               

               
               323-694, gnl|Mm7|chr8 (104293995-104294363)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	3-224, gnl\|bosTau2\|chr18 (15160495-15160274)
	3-224, gnl\|Hg17\|chr16 (66244440-66244661)
	3-224, gnl\|Mm7\|chr8 (104292819-104293039)

	323-694, gnl\|bosTau2\|chr18 (15159253-15158882)
	323-694, gnl\|Hg17\|chr16 (66245736-66246104)
	323-694, gnl\|Mm7\|chr8 (104293995-104294363)