Non-Coding RNA Search

Ss1.1-Ova1-OVRM10035B08.5

Sequence:


               
               TTTTTTCGCGGCTGCACCCGATGAGGATGGCTGATAGTACTTCTCAGTCTGATCCTCTGG
CTTCCCAAGAACTCAATGGCGACTTCAAGAAGCCAGCCCTGCCAGTGGCCCCATCGGAAC
GGAGCAAGGTCACGGCAACCAGTACTTCAAACCCCGAAGAGGTGAAGAAGGAAAGGCCCA
CGGCGCTGCCGGACTCCGATTCCGCGGAGCCTGATGCCCTGCCGGCCCAGCCGGACAGCG
GGGAGACTAGGGGTCCAGCGAAGGAGCAGCCGCGGCCCCCCACAGCGGCTCCTTCCCCCG
GCTGCCCGACCCGGGCTCCCCCCTACCGAGAGCCGCCATGGGGCGGCCCCGCTACTGCCC
CGTACGGCCTAGAGGCTCTGAAAGGAGGCACCATCCTTGGCAGCCGGAGCTTGAAAGGCA
TGAGTTGCTGCCTTTTCGGGAGGCTCCCTAGCTGCGACGTGTGCCTGGAGCACCCTTCGG
TGTCTCGCTACCACGCCGTGTTGCAGCACAGGGTGTCCAGCCCCGATGCAGAATCCGACG
GCCACGGGCCCGGCTTCTATCTCTACGATTTGGGAAGCACCCACGGCACTTTCCTTAACA
AAACGCGCATTCCACCCCGCACCTATTGTCGGGTCCACGTCGGGCATGTTCTTCGCTTTG
GAGGCAGCACCCGGCTCTTTCTTCTTCAGGGACCAGAAGAAGACCGAGAGGCAGAATCCG
AGTTGACAGTAACGCAGCTGAAGGAATTGCGTAAGCAGCAGCAAATGATGTTGGAGAAGA
AGATGTTGGGAGAAGACTCAGACGAAGAAGAGGAAATGGATACCGCTGAAAGAAAGAGAA
ATATTAGTAGTCAAGATGATGAAATGGGCTGCACCTGGGGAATGGGAGAAGATGCTGTAG
AGGATGAGGCTGAAGAGAACCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTCGCGGCTGCACCCGATGAGGATGGCTGATAGTACTTCTCAGTCTGATCCTCTGG
CTTCCCAAGAACTCAATGGCGACTTCAAGAAGCCAGCCCTGCCAGTGGCCCCATCGGAAC
GGAGCAAGGTCACGGCAACCAGTACTTCAAACCCCGAAGAGGTGAAGAAGGAAAGGCCCA
CGGCGCTGCCGGACTCCGATTCCGCGGAGCCTGATGCCCTGCCGGCCCAGCCGGACAGCG
GGGAGACTAGGGGTCCAGCGAAGGAGCAGCCGCGGCCCCCCACAGCGGCTCCTTCCCCCG
GCTGCCCGACCCGGGCTCCCCCCTACCGAGAGCCGCCATGGGGCGGCCCCGCTACTGCCC
CGTACGGCCTAGAGGCTCTGAAAGGAGGCACCATCCTTGGCAGCCGGAGCTTGAAAGGCA
TGAGTTGCTGCCTTTTCGGGAGGCTCCCTAGCTGCGACGTGTGCCTGGAGCACCCTTCGG
TGTCTCGCTACCACGCCGTGTTGCAGCACAGGGTGTCCAGCCCCGATGCAGAATCCGACG
GCCACGGGCCCGGCTTCTATCTCTACGATTTGGGAAGCACCCACGGCACTTTCCTTAACA
AAACGCGCATTCCACCCCGCACCTATTGTCGGGTCCACGTCGGGCATGTTCTTCGCTTTG
GAGGCAGCACCCGGCTCTTTCTTCTTCAGGGACCAGAAGAAGACCGAGAGGCAGAATCCG
AGTTGACAGTAACGCAGCTGAAGGAATTGCGTAAGCAGCAGCAAATGATGTTGGAGAAGA
AGATGTTGGGAGAAGACTCAGACGAAGAAGAGGAAATGGATACCGCTGAAAGAAAGAGAA
ATATTAGTAGTCAAGATGATGAAATGGGCTGCACCTGGGGAATGGGAGAAGATGCTGTAG
AGGATGAGGCTGAAGAGAACCCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57113461|ref|XP_548678.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57113461|ref|XP_548678.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-705, gnl|bosTau2|chr11 (52827782-52827085)
               

               
               4-705, gnl|Hg17|chr2 (27798410-27799109)
               

               
               4-705, gnl|Mm7|chr5 (30559514-30560214)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-705, gnl|bosTau2|chr11 (52827782-52827085)
               

               
               4-705, gnl|Hg17|chr2 (27798410-27799109)
               

               
               4-705, gnl|Mm7|chr5 (30559514-30560214)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	4-705, gnl\|bosTau2\|chr11 (52827782-52827085)
	4-705, gnl\|Hg17\|chr2 (27798410-27799109)
	4-705, gnl\|Mm7\|chr5 (30559514-30560214)