Ss1.1-Ova1-OVRM10037C03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTTCCGGTCGTCTGGGGTTCCGCTGCGGTCGGATCCTGCGTCCGCTGTTGCCGGGGATC CTGCGTCCGCTGTTCCAGGCATCTTTTCCTGAAGGGAAAGCAGCCTCATCATATGTTTCA AGGATGGCTCTTCCTATCATTGTCAAATGGGGTGGACAGGAATATTCAGTGACCACACTT TCAGAAGATGATACTGTGCTCGATCTCAAACAGTTTCTTAAGACCCTTACCGGCGTGCTA CCAGAACGCCAGAAGTTACTTGGACTCAAAGTTAAAGGCAAACCTGCAGAAAATGATGTT AAGCTTGGAGCTCTCAAACTGAAACCAAATACTAAAATCATGATGATGGGAACTCGTGAG GAGAGCTTGGAAGATGTCTTAGGTCCACCTCCTGACAATGATGATGTTGTCAATGACTTT GATATTGAAGATGAAGTAGTTGAAGTAGAAAACAGGGAGGAAAACCTACTGAAAATTTCC CGCAGAGTGAAAGAGTACAAAGTGGAAATTTTGAATCCTCCCAGGGAAGGGAAAAAGCTT TTGGTACTAGATGTTGATTATACATTATTTGACCATAGGTCTTGTGCGGAGACTGGTGTA GAGTTAATGAGGCCATATCTTCATGAATTCCTAACATCTGCGTATGAGGACTATGACATT GTTATTTGGTCTGCAACAAATATGAAGTGGATTGAAGCTAAAATGAAAGAGCTGGGAGTG AGCACAAATGCAAATTATAAGATTACCTTCATGTTGGACAGTGCTGCTATGATTACAGTG CATACTCCAAGGAGAGGTTTAATAGATGTGAAGCCTCTGGGTGTTATATGGGGAAAGTTT TCAGAGTTTTACAGCAAAAAAAACACCATTATGTTTGATGACATAGGAAGAAATTTTCTC ATGAACCCACAGAATGGATTAAAGATAAGACCTTTTATGAAAGCACACCTAAATCGAGAT AAAGACAAAGAACTTTTAAAATTAACCCAGTACCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTTCCGGTCGTCTGGGGTTCCGCTGCGGTCGGATCCTGCGTCCGCTGTTGCCGGGGATC CTGCGTCCGCTGTTCCAGGCATCTTTTCCTGAAGGGAAAGCAGCCTCATCATATGTTTCA AGGATGGCTCTTCCTATCATTGTCAAATGGGGTGGACAGGAATATTCAGTGACCACACTT TCAGAAGATGATACTGTGCTCGATCTCAAACAGTTTCTTAAGACCCTTACCGGCGTGCTA CCAGAACGCCAGAAGTTACTTGGACTCAAAGTTAAAGGCAAACCTGCAGAAAATGATGTT AAGCTTGGAGCTCTCAAACTGAAACCAAATACTAAAATCATGATGATGGGAACTCGTGAG GAGAGCTTGGAAGATGTCTTAGGTCCACCTCCTGACAATGATGATGTTGTCAATGACTTT GATATTGAAGATGAAGTAGTTGAAGTAGAAAACAGGGAGGAAAACCTACTGAAAATTTCC CGCAGAGTGAAAGAGTACAAAGTGGAAATTTTGAATCCTCCCAGGGAAGGGAAAAAGCTT TTGGTACTAGATGTTGATTATACATTATTTGACCATAGGTCTTGTGCGGAGACTGGTGTA GAGTTAATGAGGCCATATCTTCATGAATTCCTAACATCTGCGTATGAGGACTATGACATT GTTATTTGGTCTGCAACAAATATGAAGTGGATTGAAGCTAAAATGAAAGAGCTGGGAGTG AGCACAAATGCAAATTATAAGATTACCTTCATGTTGGACAGTGCTGCTATGATTACAGTG CATACTCCAAGGAGAGGTTTAATAGATGTGAAGCCTCTGGGTGTTATATGGGGAAAGTTT TCAGAGTTTTACAGCAAAAAAAACACCATTATGTTTGATGACATAGGAAGAAATTTTCTC ATGAACCCACAGAATGGATTAAAGATAAGACCTTTTATGAAAGCACACCTAAATCGAGAT AAAGACAAAGAACTTTTAAAATTAACCCAGTACCTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 73-281, gnl|bosTau2|chr7 (48308152-48307945) | |
| 73-281, gnl|Hg17|chr5 (158628450-158628659) | |
| 73-281, gnl|Mm7|chr11 (44423770-44423564) | |
| 454-571, gnl|bosTau2|chr7 (48306315-48306198) | |
| 454-571, gnl|canFam2|chr4 (54435269-54435126) | |
| 454-571, gnl|danRer3|chr21 (26110801-26110946) | |
| 454-571, gnl|dasNov1|scaffold_15160 (44103-43958) | |
| 454-571, gnl|echTel1|scaffold_321202 (41719-41863) | |
| 454-571, gnl|fr1|chrUn (189675129-189675271) | |
| 454-571, gnl|galGal2|chr13 (9593401-9593255) | |
| 454-571, gnl|hg17|chr5 (158630098-158630242) | |
| 454-571, gnl|Hg17|chr5 (158630112-158630229) | |
| 454-571, gnl|loxAfr1|scaffold_13277 (58775-58632) | |
| 454-571, gnl|mm7|chr11 (44422251-44422107) | |
| 454-571, gnl|Mm7|chr11 (44422235-44422118) | |
| 454-571, gnl|monDom2|scaffold_6 (45759865-45759718) | |
| 454-571, gnl|oryCun1|scaffold_134500 (6425-6569) | |
| 454-571, gnl|panTro1|chr4 (165807443-165807587) | |
| 454-571, gnl|rheMac2|chr6 (155684593-155684737) | |
| 454-571, gnl|rn3|chr10 (29624136-29623992) | |
| 454-571, gnl|tetNig1|chr7 (7369968-7369832) | |
| 454-571, gnl|xenTro1|scaffold_1367 (113914-113789) | |
| 808-931, gnl|bosTau2|chr7 (48299282-48299159) | |
| 808-931, gnl|canFam2|chr4 (54427702-54427571) | |
| 808-931, gnl|danRer3|chr21 (26114780-26114903) | |
| 808-931, gnl|echTel1|scaffold_266345 (772-641) | |
| 808-931, gnl|fr1|chrUn (189676080-189676210) | |
| 808-931, gnl|galGal2|chr13 (9588324-9588201) | |
| 808-931, gnl|hg17|chr5 (158637815-158637946) | |
| 808-931, gnl|Hg17|chr5 (158637824-158637947) | |
| 808-931, gnl|mm7|chr11 (44415085-44414954) | |
| 808-931, gnl|Mm7|chr11 (44415074-44414951) | |
| 808-931, gnl|monDom2|scaffold_6 (45748967-45748836) | |
| 808-931, gnl|oryCun1|scaffold_134500 (13886-14017) | |
| 808-931, gnl|panTro1|chr4 (165815162-165815293) | |
| 808-931, gnl|rheMac2|chr6 (155691786-155691917) | |
| 808-931, gnl|rn3|chr10 (29617523-29617392) | |
| 808-931, gnl|tetNig1|chr7 (7369116-7368985) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 73-281, gnl|bosTau2|chr7 (48308152-48307945) | |
| 73-281, gnl|Hg17|chr5 (158628450-158628659) | |
| 73-281, gnl|Mm7|chr11 (44423770-44423564) | |
| 454-571, gnl|bosTau2|chr7 (48306315-48306198) | |
| 454-571, gnl|canFam2|chr4 (54435269-54435126) | |
| 454-571, gnl|danRer3|chr21 (26110801-26110946) | |
| 454-571, gnl|dasNov1|scaffold_15160 (44103-43958) | |
| 454-571, gnl|echTel1|scaffold_321202 (41719-41863) | |
| 454-571, gnl|fr1|chrUn (189675129-189675271) | |
| 454-571, gnl|galGal2|chr13 (9593401-9593255) | |
| 454-571, gnl|hg17|chr5 (158630098-158630242) | |
| 454-571, gnl|Hg17|chr5 (158630112-158630229) | |
| 454-571, gnl|loxAfr1|scaffold_13277 (58775-58632) | |
| 454-571, gnl|mm7|chr11 (44422251-44422107) | |
| 454-571, gnl|Mm7|chr11 (44422235-44422118) | |
| 454-571, gnl|monDom2|scaffold_6 (45759865-45759718) | |
| 454-571, gnl|oryCun1|scaffold_134500 (6425-6569) | |
| 454-571, gnl|panTro1|chr4 (165807443-165807587) | |
| 454-571, gnl|rheMac2|chr6 (155684593-155684737) | |
| 454-571, gnl|rn3|chr10 (29624136-29623992) | |
| 454-571, gnl|tetNig1|chr7 (7369968-7369832) | |
| 454-571, gnl|xenTro1|scaffold_1367 (113914-113789) | |
| 808-931, gnl|bosTau2|chr7 (48299282-48299159) | |
| 808-931, gnl|canFam2|chr4 (54427702-54427571) | |
| 808-931, gnl|danRer3|chr21 (26114780-26114903) | |
| 808-931, gnl|echTel1|scaffold_266345 (772-641) | |
| 808-931, gnl|fr1|chrUn (189676080-189676210) | |
| 808-931, gnl|galGal2|chr13 (9588324-9588201) | |
| 808-931, gnl|hg17|chr5 (158637815-158637946) | |
| 808-931, gnl|Hg17|chr5 (158637824-158637947) | |
| 808-931, gnl|mm7|chr11 (44415085-44414954) | |
| 808-931, gnl|Mm7|chr11 (44415074-44414951) | |
| 808-931, gnl|monDom2|scaffold_6 (45748967-45748836) | |
| 808-931, gnl|oryCun1|scaffold_134500 (13886-14017) | |
| 808-931, gnl|panTro1|chr4 (165815162-165815293) | |
| 808-931, gnl|rheMac2|chr6 (155691786-155691917) | |
| 808-931, gnl|rn3|chr10 (29617523-29617392) | |
| 808-931, gnl|tetNig1|chr7 (7369116-7368985) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) | |
| ese (0.126502) |