Non-Coding RNA Search

Ss1.1-Ova1-OVRM10038B05.5

Sequence:


               
               GCAATCATGGTGCCGCTGGGGAGGGGAGAAGCTGCTGCCGCCGCCGCTGTTGCCGGGAGC
CGCGGAGACAGGTCACTACCTTTCCATTTCTCACAATTGGGCTGAGCACAATTGAACCAT
GGGGGAACACAGTCCAGACGACAGCATCAGCTACTTTGAGGCAGAGGAAGATGAGCTGAC
CCCCGATGACAAGATGCTCAGGTTTGTGGATAAGAACGGACTGGTGCCTTCCTCATCTGG
AACTGTTTATGATAGGACAACTGTTCTCATTGAGCAGGACCCTGGCACTTTGGAGGATGA
CGATGACGATGGACAGTGTGGAGAACACTTGCCTTTTCTAGTAGGGGGTGAAGAGGGCTT
TCACCTAATAGATCATGAAGCAATGTCCCAGGGTTACGTGCAACACATCATTTCACCAGA
TCAGATTCATTTAACAATAAACCCTGGTTCCACGCCCATGCCAAGAAATATCGAAGGTGC
AACCCTCACTCTGCAGTCGGAATGTCCAGAAACGAAACGCAAAGAAGTAAAGCGGTACCA
GTGCACCTTTGAGGGCTGTCCCCGCACCTACAGCACAGCAGGCAACCTGCGCACCCACCA
GAAGACTCACCGGGGAGAGTACACCTTTGTCTGTAATCAGGAGGGCTGCGGCAAGGCCTT
CCTCACCTCCTACAGCCTCAGGATCCACGTGCGAGTGCACACGAAGGAGAAGCCATTTGA
GTGTGACGTGCAGGGCTGTGAGAAGGCGTTCAACACGCTGTACAGGCTGAAAGCACACCA
GAGGCTTCACACAGGGAAGACGTTTAACTGTGAATCTGAAGGCTGCAGCAAGTATCTTCT
TCCTCAGAGCAGAAGAGCTGCATTTTGCTCATCAGGAGAATGTGCGGCTTTCCAGGAGTT
TTGTTCAGGCGGCATGCCCTCGGCAGGCGGGTGGCCTGGTTTGGGGTTCCAGCCAGGCTT
TTGGTTGTCCCCTCCCATCTCCACCCCTGACCCCTCTGGATTTTGCATACAGCCTAGTAC
AGTGCAAAGAAGGATGTGACTTGCTCAGCTTAGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAATCATGGTGCCGCTGGGGAGGGGAGAAGCTGCTGCCGCCGCCGCTGTTGCCGGGAGC
CGCGGAGACAGGTCACTACCTTTCCATTTCTCACAATTGGGCTGAGCACAATTGAACCAT
GGGGGAACACAGTCCAGACGACAGCATCAGCTACTTTGAGGCAGAGGAAGATGAGCTGAC
CCCCGATGACAAGATGCTCAGGTTTGTGGATAAGAACGGACTGGTGCCTTCCTCATCTGG
AACTGTTTATGATAGGACAACTGTTCTCATTGAGCAGGACCCTGGCACTTTGGAGGATGA
CGATGACGATGGACAGTGTGGAGAACACTTGCCTTTTCTAGTAGGGGGTGAAGAGGGCTT
TCACCTAATAGATCATGAAGCAATGTCCCAGGGTTACGTGCAACACATCATTTCACCAGA
TCAGATTCATTTAACAATAAACCCTGGTTCCACGCCCATGCCAAGAAATATCGAAGGTGC
AACCCTCACTCTGCAGTCGGAATGTCCAGAAACGAAACGCAAAGAAGTAAAGCGGTACCA
GTGCACCTTTGAGGGCTGTCCCCGCACCTACAGCACAGCAGGCAACCTGCGCACCCACCA
GAAGACTCACCGGGGAGAGTACACCTTTGTCTGTAATCAGGAGGGCTGCGGCAAGGCCTT
CCTCACCTCCTACAGCCTCAGGATCCACGTGCGAGTGCACACGAAGGAGAAGCCATTTGA
GTGTGACGTGCAGGGCTGTGAGAAGGCGTTCAACACGCTGTACAGGCTGAAAGCACACCA
GAGGCTTCACACAGGGAAGACGTTTAACTGTGAATCTGAAGGCTGCAGCAAGTATCTTCT
TCCTCAGAGCAGAAGAGCTGCATTTTGCTCATCAGGAGAATGTGCGGCTTTCCAGGAGTT
TTGTTCAGGCGGCATGCCCTCGGCAGGCGGGTGGCCTGGTTTGGGGTTCCAGCCAGGCTT
TTGGTTGTCCCCTCCCATCTCCACCCCTGACCCCTCTGGATTTTGCATACAGCCTAGTAC
AGTGCAAAGAAGGATGTGACTTGCTCAGCTTAGTCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|30523043|gb|AAP31813.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|30523043|gb|AAP31813.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               66-530, gnl|bosTau2|chr3 (75247279-75247743)
               

               
               66-530, gnl|Hg17|chr1 (37992476-37992012)
               

               
               66-530, gnl|Mm7|chr4 (124249305-124249766)
               


               
               832-1056, gnl|bosTau2|chr3 (75285480-75285712)
               

               
               832-1056, gnl|Hg17|chr1 (37949007-37948788)
               

               
               832-1056, gnl|Mm7|chr4 (124290086-124290283)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-530, gnl|bosTau2|chr3 (75247279-75247743)
               

               
               66-530, gnl|Hg17|chr1 (37992476-37992012)
               

               
               66-530, gnl|Mm7|chr4 (124249305-124249766)
               


               
               832-1056, gnl|bosTau2|chr3 (75285480-75285712)
               

               
               832-1056, gnl|Hg17|chr1 (37949007-37948788)
               

               
               832-1056, gnl|Mm7|chr4 (124290086-124290283)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nlu (0.191681)
               

               
               nep (0.183925)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               nep (0.183925)

	66-530, gnl\|bosTau2\|chr3 (75247279-75247743)
	66-530, gnl\|Hg17\|chr1 (37992476-37992012)
	66-530, gnl\|Mm7\|chr4 (124249305-124249766)

	832-1056, gnl\|bosTau2\|chr3 (75285480-75285712)
	832-1056, gnl\|Hg17\|chr1 (37949007-37948788)
	832-1056, gnl\|Mm7\|chr4 (124290086-124290283)