Non-Coding RNA Search

Ss1.1-Ova1-OVRM10038H07.5.5

Sequence:


               
               GACCTCGGCTTTGAAAGGCTCATCAGGCGAAAGGCCGTGGAAACCACCGGGACTTTAGAC
TCGGTGGGCCCTACCCCGCTTCCCTTCGGGTGGCGGCGCTGTGACGAGTGACTGACAGGC
ACAACGAAAGGCAGCCCTCTGGTGTCTGGAGAAAAGCGGAGCCCTGGGCTTCTCGCAGCT
TTGGCGGCAGCGGGACACAGCGGCTGAGCGCGCGCGTGGGAAAGAGGGGCCTCTGGGTGG
AACAAGGGTTTCGGGATGTCGGAGAAAGATGTTTCCCGAAAGGAGGCGGGCTAAACCGGG
GATCCCAGTCATCATGGAGCAGCAGGATCCTCTGGAGGTCCCACACTCCAAAGTGACCAC
GGAGCAGCAGGATTCGTCCAAGGAGAGAAGTGCCCCTGACAACTGCCACCAGGGGACCCT
GCAGTGCACCCGCTGCCTCATCACTTTTGCCGATTCCAAGTTCCAGGAGCGTCACATGAA
GCGGGAGCACCCAGAGGACTTCGTGGCCCAGAAGCTGCAGGGGGTCGAATTCATCTGCTT
CACCTGCGCCCGCTCCTTCCCCTCCTCCAAGGCCCTTATCGCCCATCAGCGCAGCCACGG
TCCAGCAGTCAGGCCCTCCCAGCTGGCTGCCCCCACCACCACCCAGCCCACTTTCCCCTG
TCCTGACTGTGGCAAGACCTTTGGGCAGGCCGCTTCTCTGAGGCGGCATCGCCAGGCACA
CGAGGCCCGCACACCTCCTGGCCCCTTCGCCTGCACTGAGTGTGGTCAGGACTTTGCCCA
GGAAGCAGGGCTGCATCAACACTACATCCGGCATGCCCGGGGTGATCTCTGAGCGCGGCT
TAAGCCCTCCCCAGGGCAGTGGGGGCTCTGTGGCTGGTAGGACCCACTACGATATGGGAA
TGGGAGACTTGGCAGGAAAGGCAGAAGACTGCTGATAAAGAGGACGCAGAAGATGCTCGG
TTGGAGCTTCAGTCTTTGGAGGACACAAAAGCCTTTAGGGAAACGTAAAATCAGGCAACA
GTGAGATCTTTAAGAAATTAACTAGAAAGAGGGAAAATTATTATTTGTATCTCATTCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCTCGGCTTTGAAAGGCTCATCAGGCGAAAGGCCGTGGAAACCACCGGGACTTTAGAC
TCGGTGGGCCCTACCCCGCTTCCCTTCGGGTGGCGGCGCTGTGACGAGTGACTGACAGGC
ACAACGAAAGGCAGCCCTCTGGTGTCTGGAGAAAAGCGGAGCCCTGGGCTTCTCGCAGCT
TTGGCGGCAGCGGGACACAGCGGCTGAGCGCGCGCGTGGGAAAGAGGGGCCTCTGGGTGG
AACAAGGGTTTCGGGATGTCGGAGAAAGATGTTTCCCGAAAGGAGGCGGGCTAAACCGGG
GATCCCAGTCATCATGGAGCAGCAGGATCCTCTGGAGGTCCCACACTCCAAAGTGACCAC
GGAGCAGCAGGATTCGTCCAAGGAGAGAAGTGCCCCTGACAACTGCCACCAGGGGACCCT
GCAGTGCACCCGCTGCCTCATCACTTTTGCCGATTCCAAGTTCCAGGAGCGTCACATGAA
GCGGGAGCACCCAGAGGACTTCGTGGCCCAGAAGCTGCAGGGGGTCGAATTCATCTGCTT
CACCTGCGCCCGCTCCTTCCCCTCCTCCAAGGCCCTTATCGCCCATCAGCGCAGCCACGG
TCCAGCAGTCAGGCCCTCCCAGCTGGCTGCCCCCACCACCACCCAGCCCACTTTCCCCTG
TCCTGACTGTGGCAAGACCTTTGGGCAGGCCGCTTCTCTGAGGCGGCATCGCCAGGCACA
CGAGGCCCGCACACCTCCTGGCCCCTTCGCCTGCACTGAGTGTGGTCAGGACTTTGCCCA
GGAAGCAGGGCTGCATCAACACTACATCCGGCATGCCCGGGGTGATCTCTGAGCGCGGCT
TAAGCCCTCCCCAGGGCAGTGGGGGCTCTGTGGCTGGTAGGACCCACTACGATATGGGAA
TGGGAGACTTGGCAGGAAAGGCAGAAGACTGCTGATAAAGAGGACGCAGAAGATGCTCGG
TTGGAGCTTCAGTCTTTGGAGGACACAAAAGCCTTTAGGGAAACGTAAAATCAGGCAACA
GTGAGATCTTTAAGAAATTAACTAGAAAGAGGGAAAATTATTATTTGTATCTCATTCCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57037947|ref|XP_541581.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57037947|ref|XP_541581.1|

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               7-307, gnl|bosTau2|chr18 (46234805-46234484)
               

               
               7-307, gnl|dasNov1|scaffold_18430 (20625-22024)
               

               
               7-307, gnl|hg17|chr19 (48791961-48793556)
               

               
               7-307, gnl|Hg17|chr19 (48792442-48792745)
               

               
               7-307, gnl|loxAfr1|scaffold_2151 (99898-101514)
               

               
               7-307, gnl|mm7|chr7 (21318816-21317339)
               

               
               7-307, gnl|Mm7|chr7 (21318307-21318005)
               

               
               7-307, gnl|panTro1|chr20 (45725105-45726700)
               

               
               7-307, gnl|rheMac2|chr19 (50053478-50055068)
               

               
               7-307, gnl|rn3|chr1 (79895111-79893637)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-307, gnl|bosTau2|chr18 (46234805-46234484)
               

               
               7-307, gnl|dasNov1|scaffold_18430 (20625-22024)
               

               
               7-307, gnl|hg17|chr19 (48791961-48793556)
               

               
               7-307, gnl|Hg17|chr19 (48792442-48792745)
               

               
               7-307, gnl|loxAfr1|scaffold_2151 (99898-101514)
               

               
               7-307, gnl|mm7|chr7 (21318816-21317339)
               

               
               7-307, gnl|Mm7|chr7 (21318307-21318005)
               

               
               7-307, gnl|panTro1|chr20 (45725105-45726700)
               

               
               7-307, gnl|rheMac2|chr19 (50053478-50055068)
               

               
               7-307, gnl|rn3|chr1 (79895111-79893637)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	7-307, gnl\|bosTau2\|chr18 (46234805-46234484)
	7-307, gnl\|dasNov1\|scaffold_18430 (20625-22024)
	7-307, gnl\|hg17\|chr19 (48791961-48793556)
	7-307, gnl\|Hg17\|chr19 (48792442-48792745)
	7-307, gnl\|loxAfr1\|scaffold_2151 (99898-101514)
	7-307, gnl\|mm7\|chr7 (21318816-21317339)
	7-307, gnl\|Mm7\|chr7 (21318307-21318005)
	7-307, gnl\|panTro1\|chr20 (45725105-45726700)
	7-307, gnl\|rheMac2\|chr19 (50053478-50055068)
	7-307, gnl\|rn3\|chr1 (79895111-79893637)